EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAOCG00000004478 (Gene tree)
Gene ID: 111583816
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 27500 bases
Position: chrNXFZ01004165.1:68812-96311
Accession: 111583816
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000020385	SF3b1	PF08920.10	2.1e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000013201	-	4371	XM_023293058	ENSAOCP00000020385	1315 (aa)	XP_023148826	UPI000C301080

Gene Model

Click here to download ENSAOCG00000004478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000004478's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000004478	sf3b1	100	93.622	ENSG00000115524	SF3B1	100	93.622	Homo_sapiens
ENSAOCG00000004478	sf3b1	100	99.848	ENSAPOG00000011894	sf3b1	100	99.848	Acanthochromis_polyacanthus
ENSAOCG00000004478	sf3b1	99	93.506	ENSAMEG00000013809	SF3B1	99	93.506	Ailuropoda_melanoleuca
ENSAOCG00000004478	sf3b1	100	97.795	ENSACIG00000020910	sf3b1	97	97.795	Amphilophus_citrinellus
ENSAOCG00000004478	sf3b1	100	100.000	ENSAPEG00000012937	sf3b1	100	100.000	Amphiprion_percula
ENSAOCG00000004478	sf3b1	100	99.240	ENSATEG00000020435	sf3b1	100	99.240	Anabas_testudineus
ENSAOCG00000004478	sf3b1	99	93.798	ENSAPLG00000003993	SF3B1	99	93.798	Anas_platyrhynchos
ENSAOCG00000004478	sf3b1	100	93.541	ENSACAG00000009612	SF3B1	100	93.541	Anolis_carolinensis
ENSAOCG00000004478	sf3b1	100	93.622	ENSANAG00000021577	SF3B1	100	95.038	Aotus_nancymaae
ENSAOCG00000004478	sf3b1	100	98.099	ENSACLG00000023470	sf3b1	100	98.099	Astatotilapia_calliptera
ENSAOCG00000004478	sf3b1	100	97.112	ENSAMXG00000002219	sf3b1	100	97.112	Astyanax_mexicanus
ENSAOCG00000004478	sf3b1	100	93.622	ENSBTAG00000008915	SF3B1	100	93.622	Bos_taurus
ENSAOCG00000004478	sf3b1	98	65.292	WBGene00011605	sftb-1	97	65.442	Caenorhabditis_elegans
ENSAOCG00000004478	sf3b1	100	93.622	ENSCJAG00000003902	SF3B1	100	93.622	Callithrix_jacchus
ENSAOCG00000004478	sf3b1	100	93.622	ENSCAFG00000010826	SF3B1	100	93.622	Canis_familiaris
ENSAOCG00000004478	sf3b1	100	93.622	ENSCAFG00020004750	SF3B1	100	93.622	Canis_lupus_dingo
ENSAOCG00000004478	sf3b1	100	93.622	ENSCHIG00000015226	SF3B1	100	93.622	Capra_hircus
ENSAOCG00000004478	sf3b1	100	93.546	ENSTSYG00000009214	SF3B1	100	93.546	Carlito_syrichta
ENSAOCG00000004478	sf3b1	99	93.450	ENSCAPG00000006547	SF3B1	99	93.450	Cavia_aperea
ENSAOCG00000004478	sf3b1	99	93.573	ENSCPOG00000009353	SF3B1	100	93.573	Cavia_porcellus
ENSAOCG00000004478	sf3b1	100	93.622	ENSCCAG00000020506	SF3B1	100	93.622	Cebus_capucinus
ENSAOCG00000004478	sf3b1	100	93.622	ENSCATG00000035735	SF3B1	100	93.622	Cercocebus_atys
ENSAOCG00000004478	sf3b1	99	93.578	ENSCLAG00000014767	SF3B1	99	93.578	Chinchilla_lanigera
ENSAOCG00000004478	sf3b1	100	93.622	ENSCSAG00000011505	SF3B1	100	93.622	Chlorocebus_sabaeus
ENSAOCG00000004478	sf3b1	76	92.588	ENSCHOG00000009860	SF3B1	76	92.588	Choloepus_hoffmanni
ENSAOCG00000004478	sf3b1	100	93.612	ENSCPBG00000021902	SF3B1	99	94.786	Chrysemys_picta_bellii
ENSAOCG00000004478	sf3b1	69	77.972	ENSCING00000002558	-	99	78.319	Ciona_intestinalis
ENSAOCG00000004478	sf3b1	99	80.000	ENSCSAVG00000002559	-	99	80.000	Ciona_savignyi
ENSAOCG00000004478	sf3b1	100	93.622	ENSCANG00000029415	SF3B1	100	93.622	Colobus_angolensis_palliatus
ENSAOCG00000004478	sf3b1	100	93.622	ENSCGRG00001016990	Sf3b1	100	93.622	Cricetulus_griseus_chok1gshd
ENSAOCG00000004478	sf3b1	100	93.622	ENSCGRG00000005301	Sf3b1	100	93.622	Cricetulus_griseus_crigri
ENSAOCG00000004478	sf3b1	100	94.297	ENSCSEG00000003860	sf3b1	100	94.297	Cynoglossus_semilaevis
ENSAOCG00000004478	sf3b1	96	98.418	ENSCVAG00000003680	sf3b1	99	98.418	Cyprinodon_variegatus
ENSAOCG00000004478	sf3b1	100	95.669	ENSDARG00000056138	sf3b1	100	95.669	Danio_rerio
ENSAOCG00000004478	sf3b1	100	93.551	ENSDNOG00000011754	SF3B1	100	93.551	Dasypus_novemcinctus
ENSAOCG00000004478	sf3b1	99	91.737	ENSDORG00000002399	Sf3b1	100	91.660	Dipodomys_ordii
ENSAOCG00000004478	sf3b1	100	75.806	FBgn0031266	Sf3b1	100	75.806	Drosophila_melanogaster
ENSAOCG00000004478	sf3b1	83	92.301	ENSETEG00000009188	SF3B1	100	92.301	Echinops_telfairi
ENSAOCG00000004478	sf3b1	99	85.823	ENSEBUG00000004325	sf3b1	100	88.726	Eptatretus_burgeri
ENSAOCG00000004478	sf3b1	100	93.622	ENSEASG00005020159	SF3B1	98	93.622	Equus_asinus_asinus
ENSAOCG00000004478	sf3b1	100	93.622	ENSECAG00000021657	SF3B1	98	93.622	Equus_caballus
ENSAOCG00000004478	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSAOCG00000004478	sf3b1	100	96.450	ENSELUG00000005977	sf3b1	98	96.450	Esox_lucius
ENSAOCG00000004478	sf3b1	100	93.622	ENSFCAG00000005038	SF3B1	100	93.622	Felis_catus
ENSAOCG00000004478	sf3b1	99	93.874	ENSFALG00000004281	SF3B1	99	93.874	Ficedula_albicollis
ENSAOCG00000004478	sf3b1	100	93.622	ENSFDAG00000017510	SF3B1	100	93.622	Fukomys_damarensis
ENSAOCG00000004478	sf3b1	100	97.948	ENSFHEG00000014333	sf3b1	100	97.948	Fundulus_heteroclitus
ENSAOCG00000004478	sf3b1	100	96.434	ENSGMOG00000006773	sf3b1	100	96.434	Gadus_morhua
ENSAOCG00000004478	sf3b1	100	93.840	ENSGALG00000008038	SF3B1	100	93.840	Gallus_gallus
ENSAOCG00000004478	sf3b1	98	98.457	ENSGAFG00000000704	sf3b1	100	98.457	Gambusia_affinis
ENSAOCG00000004478	sf3b1	100	97.267	ENSGACG00000008839	sf3b1	100	97.267	Gasterosteus_aculeatus
ENSAOCG00000004478	sf3b1	100	92.976	ENSGAGG00000017478	SF3B1	100	92.976	Gopherus_agassizii
ENSAOCG00000004478	sf3b1	99	88.370	ENSGGOG00000009264	SF3B1	99	88.370	Gorilla_gorilla
ENSAOCG00000004478	sf3b1	99	98.172	ENSHBUG00000007705	sf3b1	99	98.172	Haplochromis_burtoni
ENSAOCG00000004478	sf3b1	99	93.578	ENSHGLG00000008285	-	99	93.578	Heterocephalus_glaber_female
ENSAOCG00000004478	sf3b1	99	91.590	ENSHGLG00100005535	-	99	91.590	Heterocephalus_glaber_male
ENSAOCG00000004478	sf3b1	100	97.428	ENSHCOG00000016775	sf3b1	100	97.428	Hippocampus_comes
ENSAOCG00000004478	sf3b1	100	96.806	ENSIPUG00000013171	sf3b1	100	96.806	Ictalurus_punctatus
ENSAOCG00000004478	sf3b1	100	93.622	ENSSTOG00000011034	SF3B1	100	93.622	Ictidomys_tridecemlineatus
ENSAOCG00000004478	sf3b1	99	93.553	ENSJJAG00000010903	Sf3b1	99	93.553	Jaculus_jaculus
ENSAOCG00000004478	sf3b1	100	97.800	ENSKMAG00000004009	sf3b1	100	97.800	Kryptolebias_marmoratus
ENSAOCG00000004478	sf3b1	100	97.414	ENSLBEG00000022208	sf3b1	100	97.414	Labrus_bergylta
ENSAOCG00000004478	sf3b1	99	90.418	ENSLACG00000014832	SF3B1	99	90.418	Latimeria_chalumnae
ENSAOCG00000004478	sf3b1	100	95.537	ENSLOCG00000003899	sf3b1	100	95.537	Lepisosteus_oculatus
ENSAOCG00000004478	sf3b1	100	93.622	ENSLAFG00000001956	SF3B1	100	93.622	Loxodonta_africana
ENSAOCG00000004478	sf3b1	99	93.578	ENSMMUG00000022430	SF3B1	99	93.578	Macaca_mulatta
ENSAOCG00000004478	sf3b1	100	93.622	ENSMNEG00000042333	SF3B1	100	95.038	Macaca_nemestrina
ENSAOCG00000004478	sf3b1	94	88.737	ENSMLEG00000026141	SF3B1	98	88.656	Mandrillus_leucophaeus
ENSAOCG00000004478	sf3b1	100	99.163	ENSMAMG00000010241	sf3b1	100	99.163	Mastacembelus_armatus
ENSAOCG00000004478	sf3b1	100	98.099	ENSMZEG00005021254	sf3b1	100	98.099	Maylandia_zebra
ENSAOCG00000004478	sf3b1	99	93.262	ENSMGAG00000007017	SF3B1	99	93.262	Meleagris_gallopavo
ENSAOCG00000004478	sf3b1	99	89.373	ENSMAUG00000009071	Sf3b1	99	89.373	Mesocricetus_auratus
ENSAOCG00000004478	sf3b1	100	93.622	ENSMICG00000013879	SF3B1	100	93.622	Microcebus_murinus
ENSAOCG00000004478	sf3b1	99	89.305	ENSMOCG00000000455	Sf3b1	99	89.305	Microtus_ochrogaster
ENSAOCG00000004478	sf3b1	84	98.364	ENSMMOG00000000475	sf3b1	100	98.364	Mola_mola
ENSAOCG00000004478	sf3b1	100	93.090	ENSMODG00000012275	SF3B1	100	93.090	Monodelphis_domestica
ENSAOCG00000004478	sf3b1	100	98.935	ENSMALG00000017211	sf3b1	100	98.935	Monopterus_albus
ENSAOCG00000004478	sf3b1	100	93.622	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.622	Mus_caroli
ENSAOCG00000004478	sf3b1	100	93.622	ENSMUSG00000025982	Sf3b1	100	93.622	Mus_musculus
ENSAOCG00000004478	sf3b1	100	93.622	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.622	Mus_spretus
ENSAOCG00000004478	sf3b1	100	93.622	ENSMPUG00000007799	SF3B1	100	93.622	Mustela_putorius_furo
ENSAOCG00000004478	sf3b1	100	92.483	ENSMLUG00000000840	SF3B1	100	92.483	Myotis_lucifugus
ENSAOCG00000004478	sf3b1	99	93.298	ENSNGAG00000021884	-	100	93.298	Nannospalax_galili
ENSAOCG00000004478	sf3b1	100	93.009	ENSNBRG00000015816	sf3b1	100	93.009	Neolamprologus_brichardi
ENSAOCG00000004478	sf3b1	100	93.622	ENSNLEG00000006861	SF3B1	100	93.622	Nomascus_leucogenys
ENSAOCG00000004478	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSAOCG00000004478	sf3b1	100	81.129	ENSOPRG00000008596	SF3B1	100	81.278	Ochotona_princeps
ENSAOCG00000004478	sf3b1	100	93.622	ENSODEG00000011153	-	100	93.622	Octodon_degus
ENSAOCG00000004478	sf3b1	100	98.099	ENSONIG00000013758	sf3b1	100	98.099	Oreochromis_niloticus
ENSAOCG00000004478	sf3b1	82	96.218	ENSOCUG00000012722	-	96	96.218	Oryctolagus_cuniculus
ENSAOCG00000004478	sf3b1	100	97.947	ENSORLG00000020219	sf3b1	100	97.947	Oryzias_latipes
ENSAOCG00000004478	sf3b1	100	97.947	ENSORLG00020001746	sf3b1	100	97.947	Oryzias_latipes_hni
ENSAOCG00000004478	sf3b1	64	96.445	ENSORLG00015001759	sf3b1	98	96.445	Oryzias_latipes_hsok
ENSAOCG00000004478	sf3b1	100	98.404	ENSOMEG00000019231	sf3b1	100	98.404	Oryzias_melastigma
ENSAOCG00000004478	sf3b1	100	93.622	ENSOARG00000015374	SF3B1	100	93.622	Ovis_aries
ENSAOCG00000004478	sf3b1	100	93.622	ENSPPAG00000035007	SF3B1	100	93.622	Pan_paniscus
ENSAOCG00000004478	sf3b1	100	93.622	ENSPPRG00000009090	SF3B1	100	93.622	Panthera_pardus
ENSAOCG00000004478	sf3b1	100	93.622	ENSPTIG00000021557	SF3B1	100	93.622	Panthera_tigris_altaica
ENSAOCG00000004478	sf3b1	99	86.117	ENSPTRG00000012771	SF3B1	99	86.117	Pan_troglodytes
ENSAOCG00000004478	sf3b1	100	93.622	ENSPANG00000013417	SF3B1	100	93.622	Papio_anubis
ENSAOCG00000004478	sf3b1	100	96.431	ENSPKIG00000000784	sf3b1	100	96.431	Paramormyrops_kingsleyae
ENSAOCG00000004478	sf3b1	99	92.567	ENSPSIG00000017222	SF3B1	98	92.567	Pelodiscus_sinensis
ENSAOCG00000004478	sf3b1	91	97.567	ENSPMGG00000004330	sf3b1	99	97.567	Periophthalmus_magnuspinnatus
ENSAOCG00000004478	sf3b1	99	93.578	ENSPEMG00000010699	Sf3b1	100	93.578	Peromyscus_maniculatus_bairdii
ENSAOCG00000004478	sf3b1	100	88.520	ENSPMAG00000001311	sf3b1	100	88.822	Petromyzon_marinus
ENSAOCG00000004478	sf3b1	100	93.090	ENSPCIG00000010642	SF3B1	100	93.090	Phascolarctos_cinereus
ENSAOCG00000004478	sf3b1	100	98.557	ENSPFOG00000000073	sf3b1	100	98.557	Poecilia_formosa
ENSAOCG00000004478	sf3b1	100	98.556	ENSPLAG00000002293	sf3b1	100	98.556	Poecilia_latipinna
ENSAOCG00000004478	sf3b1	100	98.632	ENSPMEG00000000446	sf3b1	98	98.632	Poecilia_mexicana
ENSAOCG00000004478	sf3b1	100	98.708	ENSPREG00000019652	sf3b1	100	98.708	Poecilia_reticulata
ENSAOCG00000004478	sf3b1	82	97.138	ENSPPYG00000013044	SF3B1	95	97.138	Pongo_abelii
ENSAOCG00000004478	sf3b1	100	93.470	ENSPCAG00000009292	SF3B1	100	93.470	Procavia_capensis
ENSAOCG00000004478	sf3b1	100	93.622	ENSPCOG00000024074	SF3B1	100	93.622	Propithecus_coquereli
ENSAOCG00000004478	sf3b1	100	93.622	ENSPVAG00000008302	SF3B1	100	93.622	Pteropus_vampyrus
ENSAOCG00000004478	sf3b1	100	98.023	ENSPNYG00000014939	sf3b1	100	98.023	Pundamilia_nyererei
ENSAOCG00000004478	sf3b1	100	96.884	ENSPNAG00000008288	sf3b1	100	96.884	Pygocentrus_nattereri
ENSAOCG00000004478	sf3b1	100	93.622	ENSRNOG00000013516	Sf3b1	100	93.622	Rattus_norvegicus
ENSAOCG00000004478	sf3b1	99	89.886	ENSRBIG00000026096	SF3B1	100	89.886	Rhinopithecus_bieti
ENSAOCG00000004478	sf3b1	100	93.622	ENSRROG00000031308	SF3B1	100	93.622	Rhinopithecus_roxellana
ENSAOCG00000004478	sf3b1	100	93.622	ENSSBOG00000020080	SF3B1	100	93.622	Saimiri_boliviensis_boliviensis
ENSAOCG00000004478	sf3b1	100	93.090	ENSSHAG00000017564	SF3B1	100	93.090	Sarcophilus_harrisii
ENSAOCG00000004478	sf3b1	100	96.578	ENSSFOG00015021535	sf3b1	100	96.578	Scleropages_formosus
ENSAOCG00000004478	sf3b1	99	97.800	ENSSMAG00000013977	sf3b1	99	97.800	Scophthalmus_maximus
ENSAOCG00000004478	sf3b1	100	99.163	ENSSDUG00000017422	sf3b1	100	99.163	Seriola_dumerili
ENSAOCG00000004478	sf3b1	100	99.087	ENSSLDG00000019495	sf3b1	100	99.087	Seriola_lalandi_dorsalis
ENSAOCG00000004478	sf3b1	75	98.944	ENSSARG00000007016	SF3B1	75	98.944	Sorex_araneus
ENSAOCG00000004478	sf3b1	100	93.460	ENSSPUG00000000410	SF3B1	100	93.460	Sphenodon_punctatus
ENSAOCG00000004478	sf3b1	100	99.620	ENSSPAG00000010451	sf3b1	99	99.620	Stegastes_partitus
ENSAOCG00000004478	sf3b1	91	93.095	ENSSSCG00000016075	SF3B1	100	95.038	Sus_scrofa
ENSAOCG00000004478	sf3b1	100	93.840	ENSTGUG00000010553	SF3B1	100	93.840	Taeniopygia_guttata
ENSAOCG00000004478	sf3b1	100	97.947	ENSTRUG00000015534	sf3b1	100	97.947	Takifugu_rubripes
ENSAOCG00000004478	sf3b1	88	97.211	ENSTBEG00000008714	SF3B1	93	97.211	Tupaia_belangeri
ENSAOCG00000004478	sf3b1	92	93.426	ENSTTRG00000003414	SF3B1	92	93.426	Tursiops_truncatus
ENSAOCG00000004478	sf3b1	94	83.604	ENSUAMG00000018506	SF3B1	99	97.976	Ursus_americanus
ENSAOCG00000004478	sf3b1	100	93.622	ENSUMAG00000020945	SF3B1	100	93.622	Ursus_maritimus
ENSAOCG00000004478	sf3b1	95	93.561	ENSVPAG00000005798	SF3B1	96	93.561	Vicugna_pacos
ENSAOCG00000004478	sf3b1	100	93.622	ENSVVUG00000025948	SF3B1	95	93.622	Vulpes_vulpes
ENSAOCG00000004478	sf3b1	100	92.103	ENSXETG00000013339	sf3b1	100	92.103	Xenopus_tropicalis
ENSAOCG00000004478	sf3b1	100	93.997	ENSXCOG00000018086	sf3b1	100	94.301	Xiphophorus_couchianus
ENSAOCG00000004478	sf3b1	100	98.480	ENSXMAG00000007369	sf3b1	100	98.480	Xiphophorus_maculatus