EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000004978 (Gene tree)
Gene ID: -
Gene Symbol: npm1a
Alias: npm1|sb:cb487
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 5219 bases
Position: chrNXFZ01002818.1:642299-647517
Accession: 111571971
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000001882	Nucleoplasmin	PF03066.15	2.6e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000012444	-	693	XM_023275417	ENSAOCP00000001882	231 (aa)	XP_023131185	-

Gene Model

Click here to download ENSAOCG00000004978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000004978's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000004978	npm1a	61	36.879	ENSAOCG00000009376	npm3	52	41.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000004978	npm1a	100	76.692	ENSAPOG00000002813	npm1a	89	80.075	Acanthochromis_polyacanthus
ENSAOCG00000004978	npm1a	100	72.481	ENSACIG00000014201	npm1a	94	74.031	Amphilophus_citrinellus
ENSAOCG00000004978	npm1a	100	86.792	ENSAPEG00000008594	npm1a	89	86.792	Amphiprion_percula
ENSAOCG00000004978	npm1a	100	69.565	ENSATEG00000008885	npm1a	89	69.928	Anabas_testudineus
ENSAOCG00000004978	npm1a	100	74.895	ENSACLG00000008376	npm1a	88	74.895	Astatotilapia_calliptera
ENSAOCG00000004978	npm1a	100	58.898	ENSAMXG00000010155	npm1a	88	61.864	Astyanax_mexicanus
ENSAOCG00000004978	npm1a	100	69.528	ENSCSEG00000011165	npm1a	86	69.528	Cynoglossus_semilaevis
ENSAOCG00000004978	npm1a	100	63.118	ENSCVAG00000008960	npm1a	89	65.779	Cyprinodon_variegatus
ENSAOCG00000004978	npm1a	100	60.392	ENSDARG00000014329	npm1a	78	73.600	Danio_rerio
ENSAOCG00000004978	npm1a	97	35.021	ENSEBUG00000012753	npm1a	69	33.735	Eptatretus_burgeri
ENSAOCG00000004978	npm1a	100	62.692	ENSELUG00000013705	npm1a	89	62.308	Esox_lucius
ENSAOCG00000004978	npm1a	100	65.169	ENSFHEG00000012496	npm1a	89	67.041	Fundulus_heteroclitus
ENSAOCG00000004978	npm1a	99	61.798	ENSGAFG00000013059	npm1a	88	61.798	Gambusia_affinis
ENSAOCG00000004978	npm1a	100	67.969	ENSGACG00000020319	npm1a	89	67.188	Gasterosteus_aculeatus
ENSAOCG00000004978	npm1a	100	64.912	ENSHBUG00000000776	npm1a	90	67.719	Haplochromis_burtoni
ENSAOCG00000004978	npm1a	100	50.958	ENSHCOG00000001059	npm1a	86	50.192	Hippocampus_comes
ENSAOCG00000004978	npm1a	100	57.197	ENSIPUG00000019452	npm1	90	56.439	Ictalurus_punctatus
ENSAOCG00000004978	npm1a	100	65.251	ENSKMAG00000010709	npm1a	89	67.181	Kryptolebias_marmoratus
ENSAOCG00000004978	npm1a	100	64.662	ENSLBEG00000008793	npm1a	89	64.662	Labrus_bergylta
ENSAOCG00000004978	npm1a	87	48.207	ENSLOCG00000009683	npm1a	93	50.996	Lepisosteus_oculatus
ENSAOCG00000004978	npm1a	99	68.321	ENSMAMG00000009344	npm1a	73	69.847	Mastacembelus_armatus
ENSAOCG00000004978	npm1a	100	75.000	ENSMZEG00005013717	npm1a	88	75.000	Maylandia_zebra
ENSAOCG00000004978	npm1a	100	72.973	ENSMMOG00000007980	npm1a	94	74.903	Mola_mola
ENSAOCG00000004978	npm1a	100	61.194	ENSMALG00000001146	npm1a	89	65.672	Monopterus_albus
ENSAOCG00000004978	npm1a	100	66.426	ENSNBRG00000013172	npm1a	90	66.787	Neolamprologus_brichardi
ENSAOCG00000004978	npm1a	100	68.148	ENSONIG00000001860	npm1a	89	72.222	Oreochromis_niloticus
ENSAOCG00000004978	npm1a	100	66.538	ENSORLG00000010179	npm1a	89	68.462	Oryzias_latipes
ENSAOCG00000004978	npm1a	100	66.795	ENSORLG00020020817	npm1a	89	67.954	Oryzias_latipes_hni
ENSAOCG00000004978	npm1a	100	66.538	ENSORLG00015003439	npm1a	89	68.462	Oryzias_latipes_hsok
ENSAOCG00000004978	npm1a	100	65.134	ENSOMEG00000007083	npm1a	89	66.284	Oryzias_melastigma
ENSAOCG00000004978	npm1a	100	57.806	ENSPKIG00000023943	npm1a	89	53.532	Paramormyrops_kingsleyae
ENSAOCG00000004978	npm1a	99	60.996	ENSPMGG00000011716	npm1a	87	60.996	Periophthalmus_magnuspinnatus
ENSAOCG00000004978	npm1a	100	64.286	ENSPFOG00000019173	npm1a	89	64.286	Poecilia_formosa
ENSAOCG00000004978	npm1a	100	64.151	ENSPLAG00000001093	npm1a	89	62.642	Poecilia_latipinna
ENSAOCG00000004978	npm1a	100	64.286	ENSPMEG00000012523	npm1a	89	64.286	Poecilia_mexicana
ENSAOCG00000004978	npm1a	100	61.278	ENSPREG00000001647	npm1a	89	63.158	Poecilia_reticulata
ENSAOCG00000004978	npm1a	100	66.786	ENSPNYG00000019321	npm1a	90	68.929	Pundamilia_nyererei
ENSAOCG00000004978	npm1a	100	59.848	ENSPNAG00000026891	npm1a	90	59.924	Pygocentrus_nattereri
ENSAOCG00000004978	npm1a	100	63.095	ENSSFOG00015007074	npm1a	88	64.683	Scleropages_formosus
ENSAOCG00000004978	npm1a	100	68.702	ENSSMAG00000019090	npm1a	89	72.137	Scophthalmus_maximus
ENSAOCG00000004978	npm1a	100	70.189	ENSSDUG00000015609	npm1a	89	71.698	Seriola_dumerili
ENSAOCG00000004978	npm1a	100	70.455	ENSSLDG00000017849	npm1a	89	71.970	Seriola_lalandi_dorsalis
ENSAOCG00000004978	npm1a	100	81.702	ENSSPAG00000021660	npm1a	87	79.574	Stegastes_partitus
ENSAOCG00000004978	npm1a	99	65.428	ENSTRUG00000024003	npm1a	89	67.037	Takifugu_rubripes
ENSAOCG00000004978	npm1a	100	67.181	ENSTNIG00000010773	npm1a	89	69.498	Tetraodon_nigroviridis
ENSAOCG00000004978	npm1a	100	65.000	ENSXCOG00000005958	npm1a	96	62.548	Xiphophorus_couchianus
ENSAOCG00000004978	npm1a	100	60.370	ENSXMAG00000000396	npm1a	89	60.741	Xiphophorus_maculatus