EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000005192 (Gene tree)
Gene ID: 111575476
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 48925 bases
Position: chrNXFZ01003053.1:227199-276123
Accession: 111575476
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000002086	R3H	PF01424.22	2.8e-12	1	1
ENSAOCP00000002112	R3H	PF01424.22	2.8e-12	1	1
ENSAOCP00000020804	R3H	PF01424.22	2.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000012067	-	5144	XM_023280628	ENSAOCP00000002112	1041 (aa)	XP_023136396	UPI000C2FF734
ENSAOCT00000012132	-	5080	XM_023280630	ENSAOCP00000020804	1041 (aa)	XP_023136398	UPI000C2FF734
ENSAOCT00000012101	-	4729	XM_023280627	ENSAOCP00000002086	1041 (aa)	XP_023136395	UPI000C2FF734

Gene Model

Click here to download ENSAOCG00000005192's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000005192's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000005192	r3hdm1	51	39.591	ENSAOCG00000003840	-	67	38.336
ENSAOCG00000005192	r3hdm1	82	58.017	ENSAOCG00000023694	r3hdm2	81	38.975

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000005192	r3hdm1	95	58.088	ENSG00000048991	R3HDM1	97	64.931	Homo_sapiens
ENSAOCG00000005192	r3hdm1	100	97.601	ENSAPOG00000020850	r3hdm1	96	97.601	Acanthochromis_polyacanthus
ENSAOCG00000005192	r3hdm1	99	46.753	ENSAMEG00000014886	R3HDM1	89	47.016	Ailuropoda_melanoleuca
ENSAOCG00000005192	r3hdm1	100	95.211	ENSAPEG00000016108	r3hdm1	100	95.211	Amphiprion_percula
ENSAOCG00000005192	r3hdm1	100	85.837	ENSATEG00000000232	r3hdm1	100	85.837	Anabas_testudineus
ENSAOCG00000005192	r3hdm1	99	46.789	ENSAPLG00000015231	R3HDM1	89	47.359	Anas_platyrhynchos
ENSAOCG00000005192	r3hdm1	99	49.491	ENSACAG00000001676	R3HDM1	89	49.491	Anolis_carolinensis
ENSAOCG00000005192	r3hdm1	95	58.333	ENSANAG00000035334	R3HDM1	87	58.333	Aotus_nancymaae
ENSAOCG00000005192	r3hdm1	100	82.201	ENSACLG00000027282	r3hdm1	100	81.914	Astatotilapia_calliptera
ENSAOCG00000005192	r3hdm1	92	64.649	ENSAMXG00000012861	R3HDM1	89	63.680	Astyanax_mexicanus
ENSAOCG00000005192	r3hdm1	88	65.729	ENSAMXG00000003536	r3hdm1	84	66.929	Astyanax_mexicanus
ENSAOCG00000005192	r3hdm1	99	48.885	ENSBTAG00000013302	R3HDM1	89	49.077	Bos_taurus
ENSAOCG00000005192	r3hdm1	95	58.088	ENSCJAG00000011718	R3HDM1	87	58.088	Callithrix_jacchus
ENSAOCG00000005192	r3hdm1	99	46.753	ENSCAFG00000005075	R3HDM1	89	47.016	Canis_familiaris
ENSAOCG00000005192	r3hdm1	99	48.794	ENSCAFG00020016119	R3HDM1	99	57.321	Canis_lupus_dingo
ENSAOCG00000005192	r3hdm1	99	48.699	ENSCHIG00000020851	R3HDM1	89	49.029	Capra_hircus
ENSAOCG00000005192	r3hdm1	99	47.911	ENSCPOG00000012784	R3HDM1	100	60.870	Cavia_porcellus
ENSAOCG00000005192	r3hdm1	95	57.598	ENSCCAG00000027199	R3HDM1	87	57.598	Cebus_capucinus
ENSAOCG00000005192	r3hdm1	93	59.465	ENSCATG00000023642	R3HDM1	87	58.088	Cercocebus_atys
ENSAOCG00000005192	r3hdm1	99	48.148	ENSCLAG00000007962	R3HDM1	100	63.211	Chinchilla_lanigera
ENSAOCG00000005192	r3hdm1	99	48.145	ENSCSAG00000016356	R3HDM1	89	48.532	Chlorocebus_sabaeus
ENSAOCG00000005192	r3hdm1	78	65.649	ENSCHOG00000013638	R3HDM1	69	65.649	Choloepus_hoffmanni
ENSAOCG00000005192	r3hdm1	80	70.144	ENSCPBG00000009645	R3HDM1	86	70.144	Chrysemys_picta_bellii
ENSAOCG00000005192	r3hdm1	95	57.843	ENSCANG00000034748	R3HDM1	87	57.843	Colobus_angolensis_palliatus
ENSAOCG00000005192	r3hdm1	99	47.955	ENSCGRG00001012357	R3hdm1	86	48.121	Cricetulus_griseus_chok1gshd
ENSAOCG00000005192	r3hdm1	99	47.955	ENSCGRG00000012080	R3hdm1	100	64.883	Cricetulus_griseus_crigri
ENSAOCG00000005192	r3hdm1	100	71.733	ENSCSEG00000008944	r3hdm1	100	73.056	Cynoglossus_semilaevis
ENSAOCG00000005192	r3hdm1	100	82.392	ENSCVAG00000007582	r3hdm1	100	82.105	Cyprinodon_variegatus
ENSAOCG00000005192	r3hdm1	99	45.060	ENSDNOG00000000771	R3HDM1	89	45.363	Dasypus_novemcinctus
ENSAOCG00000005192	r3hdm1	75	57.822	ENSETEG00000013606	R3HDM1	71	58.812	Echinops_telfairi
ENSAOCG00000005192	r3hdm1	95	61.575	ENSEASG00005007392	R3HDM1	88	61.814	Equus_asinus_asinus
ENSAOCG00000005192	r3hdm1	95	61.575	ENSECAG00000019114	R3HDM1	88	61.814	Equus_caballus
ENSAOCG00000005192	r3hdm1	55	54.023	ENSEEUG00000012589	R3HDM1	56	52.143	Erinaceus_europaeus
ENSAOCG00000005192	r3hdm1	87	48.626	ENSELUG00000014413	r3hdm1	83	51.163	Esox_lucius
ENSAOCG00000005192	r3hdm1	96	51.196	ENSELUG00000004909	R3HDM1	86	51.852	Esox_lucius
ENSAOCG00000005192	r3hdm1	95	61.098	ENSFCAG00000027113	R3HDM1	88	61.814	Felis_catus
ENSAOCG00000005192	r3hdm1	84	50.831	ENSFALG00000013731	R3HDM1	90	45.694	Ficedula_albicollis
ENSAOCG00000005192	r3hdm1	99	48.100	ENSFDAG00000016478	R3HDM1	100	64.214	Fukomys_damarensis
ENSAOCG00000005192	r3hdm1	100	83.127	ENSFHEG00000018713	r3hdm1	100	83.222	Fundulus_heteroclitus
ENSAOCG00000005192	r3hdm1	64	63.333	ENSGMOG00000006042	-	79	56.897	Gadus_morhua
ENSAOCG00000005192	r3hdm1	91	58.088	ENSGALG00000012246	R3HDM1	85	65.049	Gallus_gallus
ENSAOCG00000005192	r3hdm1	100	75.645	ENSGAFG00000006203	r3hdm1	100	75.645	Gambusia_affinis
ENSAOCG00000005192	r3hdm1	94	82.814	ENSGACG00000014925	r3hdm1	95	82.312	Gasterosteus_aculeatus
ENSAOCG00000005192	r3hdm1	91	61.029	ENSGAGG00000007840	R3HDM1	84	61.029	Gopherus_agassizii
ENSAOCG00000005192	r3hdm1	95	58.088	ENSGGOG00000008156	R3HDM1	99	47.479	Gorilla_gorilla
ENSAOCG00000005192	r3hdm1	51	91.264	ENSHBUG00000015737	R3HDM1	96	91.264	Haplochromis_burtoni
ENSAOCG00000005192	r3hdm1	99	48.566	ENSHGLG00000015718	R3HDM1	100	63.880	Heterocephalus_glaber_female
ENSAOCG00000005192	r3hdm1	99	48.474	ENSHGLG00100003184	-	100	64.214	Heterocephalus_glaber_male
ENSAOCG00000005192	r3hdm1	82	52.806	ENSHGLG00100015374	-	85	40.273	Heterocephalus_glaber_male
ENSAOCG00000005192	r3hdm1	100	68.966	ENSHCOG00000013366	r3hdm1	100	68.582	Hippocampus_comes
ENSAOCG00000005192	r3hdm1	92	62.559	ENSIPUG00000001676	R3HDM1	100	62.774	Ictalurus_punctatus
ENSAOCG00000005192	r3hdm1	83	70.588	ENSIPUG00000013629	r3hdm1	82	69.608	Ictalurus_punctatus
ENSAOCG00000005192	r3hdm1	99	48.980	ENSSTOG00000007572	R3HDM1	100	64.548	Ictidomys_tridecemlineatus
ENSAOCG00000005192	r3hdm1	98	62.884	ENSLACG00000005334	R3HDM1	87	51.816	Latimeria_chalumnae
ENSAOCG00000005192	r3hdm1	99	51.019	ENSLOCG00000001641	r3hdm1	90	51.756	Lepisosteus_oculatus
ENSAOCG00000005192	r3hdm1	85	67.251	ENSLAFG00000009065	R3HDM1	85	67.139	Loxodonta_africana
ENSAOCG00000005192	r3hdm1	93	59.656	ENSMFAG00000030331	R3HDM1	88	62.291	Macaca_fascicularis
ENSAOCG00000005192	r3hdm1	84	64.337	ENSMMUG00000009844	R3HDM1	87	58.088	Macaca_mulatta
ENSAOCG00000005192	r3hdm1	95	61.575	ENSMNEG00000027793	R3HDM1	88	62.291	Macaca_nemestrina
ENSAOCG00000005192	r3hdm1	93	59.656	ENSMLEG00000043189	R3HDM1	87	58.088	Mandrillus_leucophaeus
ENSAOCG00000005192	r3hdm1	100	88.145	ENSMAMG00000004532	r3hdm1	100	87.859	Mastacembelus_armatus
ENSAOCG00000005192	r3hdm1	100	88.825	ENSMZEG00005003157	r3hdm1	100	88.825	Maylandia_zebra
ENSAOCG00000005192	r3hdm1	96	47.490	ENSMGAG00000012461	R3HDM1	88	47.442	Meleagris_gallopavo
ENSAOCG00000005192	r3hdm1	99	48.333	ENSMAUG00000010315	R3hdm1	100	64.883	Mesocricetus_auratus
ENSAOCG00000005192	r3hdm1	95	58.333	ENSMICG00000005900	-	87	58.333	Microcebus_murinus
ENSAOCG00000005192	r3hdm1	95	58.088	ENSMICG00000042655	-	92	58.088	Microcebus_murinus
ENSAOCG00000005192	r3hdm1	99	47.330	ENSMODG00000000923	R3HDM1	96	47.435	Monodelphis_domestica
ENSAOCG00000005192	r3hdm1	100	86.507	ENSMALG00000009000	r3hdm1	90	86.220	Monopterus_albus
ENSAOCG00000005192	r3hdm1	99	47.456	MGP_CAROLIEiJ_G0014543	R3hdm1	100	64.883	Mus_caroli
ENSAOCG00000005192	r3hdm1	99	47.364	ENSMUSG00000056211	R3hdm1	100	64.883	Mus_musculus
ENSAOCG00000005192	r3hdm1	99	46.994	MGP_PahariEiJ_G0027779	R3hdm1	100	64.883	Mus_pahari
ENSAOCG00000005192	r3hdm1	99	47.364	MGP_SPRETEiJ_G0015350	R3hdm1	100	64.883	Mus_spretus
ENSAOCG00000005192	r3hdm1	99	46.753	ENSMPUG00000002412	R3HDM1	89	47.097	Mustela_putorius_furo
ENSAOCG00000005192	r3hdm1	99	46.939	ENSMLUG00000013824	R3HDM1	89	47.037	Myotis_lucifugus
ENSAOCG00000005192	r3hdm1	93	59.656	ENSNLEG00000008622	R3HDM1	87	58.088	Nomascus_leucogenys
ENSAOCG00000005192	r3hdm1	94	40.765	ENSMEUG00000011784	R3HDM1	93	41.230	Notamacropus_eugenii
ENSAOCG00000005192	r3hdm1	99	47.544	ENSODEG00000008607	R3HDM1	100	63.880	Octodon_degus
ENSAOCG00000005192	r3hdm1	95	83.071	ENSONIG00000012017	r3hdm1	89	82.874	Oreochromis_niloticus
ENSAOCG00000005192	r3hdm1	99	45.388	ENSOANG00000007987	R3HDM1	89	46.386	Ornithorhynchus_anatinus
ENSAOCG00000005192	r3hdm1	99	46.512	ENSOCUG00000017366	R3HDM1	97	47.217	Oryctolagus_cuniculus
ENSAOCG00000005192	r3hdm1	100	76.218	ENSORLG00000004297	r3hdm1	100	76.409	Oryzias_latipes
ENSAOCG00000005192	r3hdm1	100	76.218	ENSORLG00015017355	r3hdm1	100	76.600	Oryzias_latipes_hsok
ENSAOCG00000005192	r3hdm1	51	81.985	ENSOMEG00000003882	-	99	82.169	Oryzias_melastigma
ENSAOCG00000005192	r3hdm1	99	46.494	ENSOGAG00000003136	R3HDM1	89	47.173	Otolemur_garnettii
ENSAOCG00000005192	r3hdm1	99	46.654	ENSOARG00000010788	R3HDM1	89	47.037	Ovis_aries
ENSAOCG00000005192	r3hdm1	95	58.088	ENSPPAG00000027858	R3HDM1	87	58.088	Pan_paniscus
ENSAOCG00000005192	r3hdm1	95	57.598	ENSPPRG00000002626	R3HDM1	87	57.598	Panthera_pardus
ENSAOCG00000005192	r3hdm1	95	57.843	ENSPTIG00000016581	R3HDM1	87	57.843	Panthera_tigris_altaica
ENSAOCG00000005192	r3hdm1	95	58.088	ENSPTRG00000012494	R3HDM1	87	58.088	Pan_troglodytes
ENSAOCG00000005192	r3hdm1	93	59.656	ENSPANG00000026448	R3HDM1	87	58.088	Papio_anubis
ENSAOCG00000005192	r3hdm1	85	73.684	ENSPKIG00000004328	r3hdm1	78	72.697	Paramormyrops_kingsleyae
ENSAOCG00000005192	r3hdm1	99	46.525	ENSPSIG00000012915	R3HDM1	88	47.227	Pelodiscus_sinensis
ENSAOCG00000005192	r3hdm1	99	47.456	ENSPEMG00000015187	R3hdm1	100	64.883	Peromyscus_maniculatus_bairdii
ENSAOCG00000005192	r3hdm1	95	60.333	ENSPCIG00000002491	R3HDM1	88	60.570	Phascolarctos_cinereus
ENSAOCG00000005192	r3hdm1	100	82.778	ENSPFOG00000015036	r3hdm1	100	82.588	Poecilia_formosa
ENSAOCG00000005192	r3hdm1	100	75.928	ENSPLAG00000018042	r3hdm1	100	75.737	Poecilia_latipinna
ENSAOCG00000005192	r3hdm1	100	75.547	ENSPMEG00000023947	r3hdm1	100	75.452	Poecilia_mexicana
ENSAOCG00000005192	r3hdm1	100	82.426	ENSPREG00000007902	r3hdm1	100	82.426	Poecilia_reticulata
ENSAOCG00000005192	r3hdm1	99	45.556	ENSPPYG00000012815	R3HDM1	89	46.196	Pongo_abelii
ENSAOCG00000005192	r3hdm1	86	60.119	ENSPCAG00000006208	R3HDM1	77	60.831	Procavia_capensis
ENSAOCG00000005192	r3hdm1	87	62.763	ENSPCOG00000012698	R3HDM1	87	54.412	Propithecus_coquereli
ENSAOCG00000005192	r3hdm1	99	41.759	ENSPVAG00000006098	R3HDM1	89	41.667	Pteropus_vampyrus
ENSAOCG00000005192	r3hdm1	87	67.460	ENSPNAG00000013952	r3hdm1	83	67.460	Pygocentrus_nattereri
ENSAOCG00000005192	r3hdm1	83	72.549	ENSPNAG00000005436	R3HDM1	87	71.569	Pygocentrus_nattereri
ENSAOCG00000005192	r3hdm1	99	47.403	ENSRNOG00000004099	R3hdm1	89	47.798	Rattus_norvegicus
ENSAOCG00000005192	r3hdm1	93	58.126	ENSRBIG00000033317	R3HDM1	86	71.942	Rhinopithecus_bieti
ENSAOCG00000005192	r3hdm1	93	59.656	ENSRROG00000034534	R3HDM1	87	58.088	Rhinopithecus_roxellana
ENSAOCG00000005192	r3hdm1	95	57.843	ENSSBOG00000020389	R3HDM1	87	57.843	Saimiri_boliviensis_boliviensis
ENSAOCG00000005192	r3hdm1	99	46.432	ENSSHAG00000016999	R3HDM1	89	46.310	Sarcophilus_harrisii
ENSAOCG00000005192	r3hdm1	92	65.281	ENSSFOG00015014134	r3hdm1	88	64.548	Scleropages_formosus
ENSAOCG00000005192	r3hdm1	100	48.387	ENSSFOG00015019851	-	94	50.711	Scleropages_formosus
ENSAOCG00000005192	r3hdm1	100	79.981	ENSSMAG00000001669	r3hdm1	90	79.981	Scophthalmus_maximus
ENSAOCG00000005192	r3hdm1	100	84.419	ENSSDUG00000010749	r3hdm1	100	84.703	Seriola_dumerili
ENSAOCG00000005192	r3hdm1	100	85.905	ENSSLDG00000004499	r3hdm1	90	86.190	Seriola_lalandi_dorsalis
ENSAOCG00000005192	r3hdm1	54	53.094	ENSSARG00000000352	-	52	54.072	Sorex_araneus
ENSAOCG00000005192	r3hdm1	99	46.704	ENSSPUG00000004167	R3HDM1	88	47.677	Sphenodon_punctatus
ENSAOCG00000005192	r3hdm1	100	91.255	ENSSPAG00000004648	r3hdm1	100	91.255	Stegastes_partitus
ENSAOCG00000005192	r3hdm1	95	55.062	ENSSSCG00000015692	R3HDM1	87	55.062	Sus_scrofa
ENSAOCG00000005192	r3hdm1	96	47.610	ENSTGUG00000011750	R3HDM1	89	47.359	Taeniopygia_guttata
ENSAOCG00000005192	r3hdm1	100	76.060	ENSTRUG00000011654	r3hdm1	99	76.571	Takifugu_rubripes
ENSAOCG00000005192	r3hdm1	98	70.797	ENSTNIG00000010362	r3hdm1	99	71.085	Tetraodon_nigroviridis
ENSAOCG00000005192	r3hdm1	82	55.172	ENSTTRG00000003935	R3HDM1	80	45.726	Tursiops_truncatus
ENSAOCG00000005192	r3hdm1	75	58.578	ENSUAMG00000024806	R3HDM1	99	57.630	Ursus_americanus
ENSAOCG00000005192	r3hdm1	95	57.843	ENSUMAG00000005552	R3HDM1	87	57.843	Ursus_maritimus
ENSAOCG00000005192	r3hdm1	85	46.961	ENSVPAG00000007333	R3HDM1	74	46.878	Vicugna_pacos
ENSAOCG00000005192	r3hdm1	95	57.843	ENSVVUG00000006457	R3HDM1	88	57.843	Vulpes_vulpes
ENSAOCG00000005192	r3hdm1	99	41.551	ENSXETG00000019330	r3hdm1	99	43.293	Xenopus_tropicalis
ENSAOCG00000005192	r3hdm1	76	73.116	ENSXCOG00000017448	r3hdm1	93	73.618	Xiphophorus_couchianus
ENSAOCG00000005192	r3hdm1	100	82.139	ENSXMAG00000007885	r3hdm1	100	82.235	Xiphophorus_maculatus