EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000005279 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 14815 bases
Position: chrNXFZ01003053.1:83603-98417
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000002177	RRM_1	PF00076.22	2.2e-33	1	2
ENSAOCP00000002177	RRM_1	PF00076.22	2.2e-33	2	2
ENSAOCP00000020881	RRM_1	PF00076.22	3.9e-33	1	2
ENSAOCP00000020881	RRM_1	PF00076.22	3.9e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000011934	-	3342	-	ENSAOCP00000020881	524 (aa)	-	-
ENSAOCT00000011946	-	1290	-	ENSAOCP00000002177	429 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000005279's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000005279's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000005279	pspc1	75	59.799	ENSAOCG00000018863	nono	91	59.296
ENSAOCG00000005279	pspc1	76	61.787	ENSAOCG00000002889	sfpq	54	61.804

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000005279	pspc1	78	73.256	ENSG00000121390	PSPC1	82	80.556	Homo_sapiens
ENSAOCG00000005279	pspc1	100	97.901	ENSAPOG00000015946	pspc1	100	97.901	Acanthochromis_polyacanthus
ENSAOCG00000005279	pspc1	87	68.116	ENSAMEG00000017420	PSPC1	88	70.146	Ailuropoda_melanoleuca
ENSAOCG00000005279	pspc1	100	79.198	ENSACIG00000018695	pspc1	100	78.435	Amphilophus_citrinellus
ENSAOCG00000005279	pspc1	100	100.000	ENSAPEG00000015927	pspc1	100	100.000	Amphiprion_percula
ENSAOCG00000005279	pspc1	100	76.415	ENSATEG00000004878	pspc1	100	75.849	Anabas_testudineus
ENSAOCG00000005279	pspc1	77	66.826	ENSAPLG00000006246	PSPC1	100	67.536	Anas_platyrhynchos
ENSAOCG00000005279	pspc1	69	66.757	ENSAPLG00000003643	SFPQ	86	56.432	Anas_platyrhynchos
ENSAOCG00000005279	pspc1	89	67.427	ENSACAG00000002093	PSPC1	91	66.934	Anolis_carolinensis
ENSAOCG00000005279	pspc1	60	71.042	ENSACAG00000013307	-	67	53.132	Anolis_carolinensis
ENSAOCG00000005279	pspc1	87	68.750	ENSANAG00000000059	PSPC1	83	78.086	Aotus_nancymaae
ENSAOCG00000005279	pspc1	100	77.333	ENSACLG00000027220	pspc1	100	76.705	Astatotilapia_calliptera
ENSAOCG00000005279	pspc1	100	66.971	ENSAMXG00000036881	pspc1	100	67.772	Astyanax_mexicanus
ENSAOCG00000005279	pspc1	96	65.318	ENSBTAG00000003934	PSPC1	89	69.520	Bos_taurus
ENSAOCG00000005279	pspc1	87	68.750	ENSCJAG00000004554	PSPC1	88	69.937	Callithrix_jacchus
ENSAOCG00000005279	pspc1	78	73.256	ENSCAFG00020002009	PSPC1	83	80.556	Canis_lupus_dingo
ENSAOCG00000005279	pspc1	96	65.318	ENSCHIG00000016708	PSPC1	89	69.520	Capra_hircus
ENSAOCG00000005279	pspc1	76	62.945	ENSTSYG00000032882	PSPC1	88	61.814	Carlito_syrichta
ENSAOCG00000005279	pspc1	78	73.256	ENSCPOG00000000395	PSPC1	83	80.556	Cavia_porcellus
ENSAOCG00000005279	pspc1	87	68.750	ENSCCAG00000033498	PSPC1	88	70.146	Cebus_capucinus
ENSAOCG00000005279	pspc1	78	73.023	ENSCATG00000036434	PSPC1	90	80.556	Cercocebus_atys
ENSAOCG00000005279	pspc1	66	73.641	ENSCLAG00000005241	PSPC1	89	69.065	Chinchilla_lanigera
ENSAOCG00000005279	pspc1	84	63.807	ENSCHOG00000008913	PSPC1	91	64.837	Choloepus_hoffmanni
ENSAOCG00000005279	pspc1	89	67.216	ENSCPBG00000020859	PSPC1	90	67.828	Chrysemys_picta_bellii
ENSAOCG00000005279	pspc1	59	60.630	ENSCSAVG00000003533	-	52	61.372	Ciona_savignyi
ENSAOCG00000005279	pspc1	65	68.231	ENSCANG00000018948	PSPC1	87	82.061	Colobus_angolensis_palliatus
ENSAOCG00000005279	pspc1	85	69.584	ENSCGRG00001018368	Pspc1	88	69.602	Cricetulus_griseus_chok1gshd
ENSAOCG00000005279	pspc1	85	69.584	ENSCGRG00000011724	Pspc1	88	69.602	Cricetulus_griseus_crigri
ENSAOCG00000005279	pspc1	100	77.714	ENSCVAG00000007679	-	100	77.714	Cyprinodon_variegatus
ENSAOCG00000005279	pspc1	100	63.586	ENSDARG00000006621	pspc1	100	68.704	Danio_rerio
ENSAOCG00000005279	pspc1	80	72.893	ENSDNOG00000011078	PSPC1	91	68.560	Dasypus_novemcinctus
ENSAOCG00000005279	pspc1	96	61.977	ENSDORG00000016050	Pspc1	90	66.258	Dipodomys_ordii
ENSAOCG00000005279	pspc1	68	44.860	ENSEBUG00000010133	pspc1	78	46.465	Eptatretus_burgeri
ENSAOCG00000005279	pspc1	79	61.722	ENSEBUG00000003964	-	64	66.482	Eptatretus_burgeri
ENSAOCG00000005279	pspc1	88	68.632	ENSEASG00005000119	PSPC1	83	80.556	Equus_asinus_asinus
ENSAOCG00000005279	pspc1	88	68.632	ENSECAG00000017286	PSPC1	83	80.556	Equus_caballus
ENSAOCG00000005279	pspc1	61	70.385	ENSEEUG00000011288	-	51	70.385	Erinaceus_europaeus
ENSAOCG00000005279	pspc1	100	68.073	ENSELUG00000003746	pspc1	100	68.373	Esox_lucius
ENSAOCG00000005279	pspc1	78	73.488	ENSFCAG00000027841	PSPC1	83	80.556	Felis_catus
ENSAOCG00000005279	pspc1	99	62.292	ENSFALG00000008750	PSPC1	90	67.611	Ficedula_albicollis
ENSAOCG00000005279	pspc1	87	68.565	ENSFDAG00000002617	PSPC1	90	69.937	Fukomys_damarensis
ENSAOCG00000005279	pspc1	100	63.858	ENSGMOG00000015074	pspc1	100	64.232	Gadus_morhua
ENSAOCG00000005279	pspc1	88	68.067	ENSGALG00000017142	PSPC1	90	68.033	Gallus_gallus
ENSAOCG00000005279	pspc1	96	68.692	ENSGAFG00000006327	pspc1	81	81.378	Gambusia_affinis
ENSAOCG00000005279	pspc1	100	75.522	ENSGACG00000014901	pspc1	95	83.481	Gasterosteus_aculeatus
ENSAOCG00000005279	pspc1	71	65.426	ENSGAGG00000017325	-	69	55.925	Gopherus_agassizii
ENSAOCG00000005279	pspc1	89	67.216	ENSGAGG00000019164	PSPC1	90	67.828	Gopherus_agassizii
ENSAOCG00000005279	pspc1	78	73.256	ENSGGOG00000003414	PSPC1	82	80.556	Gorilla_gorilla
ENSAOCG00000005279	pspc1	100	86.069	ENSHBUG00000001139	pspc1	100	86.641	Haplochromis_burtoni
ENSAOCG00000005279	pspc1	87	68.987	ENSHGLG00000018811	PSPC1	89	69.937	Heterocephalus_glaber_female
ENSAOCG00000005279	pspc1	64	76.173	ENSHGLG00100007962	PSPC1	92	78.000	Heterocephalus_glaber_male
ENSAOCG00000005279	pspc1	79	78.795	ENSHCOG00000013251	pspc1	99	73.942	Hippocampus_comes
ENSAOCG00000005279	pspc1	100	69.646	ENSIPUG00000013192	pspc1	100	68.934	Ictalurus_punctatus
ENSAOCG00000005279	pspc1	88	68.632	ENSSTOG00000026833	PSPC1	82	80.556	Ictidomys_tridecemlineatus
ENSAOCG00000005279	pspc1	76	74.939	ENSJJAG00000018334	Pspc1	88	69.520	Jaculus_jaculus
ENSAOCG00000005279	pspc1	100	61.742	ENSKMAG00000013525	-	98	72.316	Kryptolebias_marmoratus
ENSAOCG00000005279	pspc1	99	79.401	ENSLBEG00000004474	pspc1	100	79.401	Labrus_bergylta
ENSAOCG00000005279	pspc1	91	64.128	ENSLACG00000010762	PSPC1	100	62.000	Latimeria_chalumnae
ENSAOCG00000005279	pspc1	92	69.899	ENSLOCG00000010832	pspc1	99	67.468	Lepisosteus_oculatus
ENSAOCG00000005279	pspc1	81	71.910	ENSLAFG00000010968	PSPC1	91	68.421	Loxodonta_africana
ENSAOCG00000005279	pspc1	78	73.023	ENSMFAG00000032728	PSPC1	91	80.615	Macaca_fascicularis
ENSAOCG00000005279	pspc1	78	73.023	ENSMMUG00000020262	PSPC1	88	80.556	Macaca_mulatta
ENSAOCG00000005279	pspc1	78	73.023	ENSMNEG00000027401	PSPC1	85	75.931	Macaca_nemestrina
ENSAOCG00000005279	pspc1	66	72.826	ENSMLEG00000039043	PSPC1	94	69.065	Mandrillus_leucophaeus
ENSAOCG00000005279	pspc1	100	84.369	ENSMAMG00000004333	pspc1	100	84.181	Mastacembelus_armatus
ENSAOCG00000005279	pspc1	100	77.333	ENSMZEG00005005726	pspc1	100	76.705	Maylandia_zebra
ENSAOCG00000005279	pspc1	77	66.667	ENSMGAG00000015134	PSPC1	100	67.453	Meleagris_gallopavo
ENSAOCG00000005279	pspc1	89	65.707	ENSMAUG00000021067	Pspc1	86	67.892	Mesocricetus_auratus
ENSAOCG00000005279	pspc1	92	67.921	ENSMICG00000013970	PSPC1	83	80.556	Microcebus_murinus
ENSAOCG00000005279	pspc1	77	73.684	ENSMOCG00000006060	Pspc1	90	68.583	Microtus_ochrogaster
ENSAOCG00000005279	pspc1	80	85.714	ENSMMOG00000004352	pspc1	71	85.714	Mola_mola
ENSAOCG00000005279	pspc1	81	72.540	ENSMODG00000008029	PSPC1	66	75.669	Monodelphis_domestica
ENSAOCG00000005279	pspc1	100	84.160	ENSMALG00000008914	pspc1	100	83.969	Monopterus_albus
ENSAOCG00000005279	pspc1	81	72.018	MGP_CAROLIEiJ_G0019341	Pspc1	89	74.519	Mus_caroli
ENSAOCG00000005279	pspc1	81	72.018	ENSMUSG00000021938	Pspc1	88	74.638	Mus_musculus
ENSAOCG00000005279	pspc1	93	66.000	MGP_PahariEiJ_G0030359	Pspc1	89	74.519	Mus_pahari
ENSAOCG00000005279	pspc1	81	72.018	MGP_SPRETEiJ_G0020232	Pspc1	88	74.638	Mus_spretus
ENSAOCG00000005279	pspc1	78	73.256	ENSMPUG00000013347	PSPC1	88	70.146	Mustela_putorius_furo
ENSAOCG00000005279	pspc1	88	68.201	ENSMLUG00000017663	PSPC1	89	69.295	Myotis_lucifugus
ENSAOCG00000005279	pspc1	93	67.262	ENSNGAG00000011271	Pspc1	88	69.182	Nannospalax_galili
ENSAOCG00000005279	pspc1	100	78.009	ENSNBRG00000014059	pspc1	99	76.620	Neolamprologus_brichardi
ENSAOCG00000005279	pspc1	78	73.256	ENSNLEG00000001294	PSPC1	88	69.937	Nomascus_leucogenys
ENSAOCG00000005279	pspc1	60	70.000	ENSMEUG00000000476	PSPC1	72	75.773	Notamacropus_eugenii
ENSAOCG00000005279	pspc1	88	63.257	ENSODEG00000019012	-	88	65.344	Octodon_degus
ENSAOCG00000005279	pspc1	88	59.916	ENSODEG00000007817	-	88	58.969	Octodon_degus
ENSAOCG00000005279	pspc1	100	87.214	ENSONIG00000012010	pspc1	99	87.786	Oreochromis_niloticus
ENSAOCG00000005279	pspc1	66	72.826	ENSOANG00000009017	-	100	68.345	Ornithorhynchus_anatinus
ENSAOCG00000005279	pspc1	81	58.908	ENSOANG00000011381	-	84	59.338	Ornithorhynchus_anatinus
ENSAOCG00000005279	pspc1	78	72.897	ENSOCUG00000006153	PSPC1	88	69.520	Oryctolagus_cuniculus
ENSAOCG00000005279	pspc1	100	77.947	ENSORLG00000004232	-	100	77.376	Oryzias_latipes
ENSAOCG00000005279	pspc1	100	78.707	ENSORLG00020000578	PSPC1	100	76.471	Oryzias_latipes_hni
ENSAOCG00000005279	pspc1	100	78.327	ENSORLG00015017480	pspc1	100	77.757	Oryzias_latipes_hsok
ENSAOCG00000005279	pspc1	78	73.488	ENSOGAG00000012643	PSPC1	88	69.937	Otolemur_garnettii
ENSAOCG00000005279	pspc1	87	68.288	ENSOARG00000014163	PSPC1	95	69.182	Ovis_aries
ENSAOCG00000005279	pspc1	77	70.482	ENSPPAG00000009836	PSPC1	92	80.556	Pan_paniscus
ENSAOCG00000005279	pspc1	78	73.488	ENSPPRG00000008833	PSPC1	88	69.937	Panthera_pardus
ENSAOCG00000005279	pspc1	66	73.098	ENSPTIG00000016917	PSPC1	84	69.065	Panthera_tigris_altaica
ENSAOCG00000005279	pspc1	76	75.182	ENSPTRG00000005677	PSPC1	82	80.556	Pan_troglodytes
ENSAOCG00000005279	pspc1	78	73.023	ENSPANG00000001992	PSPC1	89	80.615	Papio_anubis
ENSAOCG00000005279	pspc1	100	67.844	ENSPKIG00000003578	pspc1	100	70.000	Paramormyrops_kingsleyae
ENSAOCG00000005279	pspc1	91	65.992	ENSPSIG00000005168	PSPC1	90	66.667	Pelodiscus_sinensis
ENSAOCG00000005279	pspc1	76	73.795	ENSPMGG00000015135	pspc1	98	74.859	Periophthalmus_magnuspinnatus
ENSAOCG00000005279	pspc1	81	72.018	ENSPEMG00000015214	Pspc1	90	68.789	Peromyscus_maniculatus_bairdii
ENSAOCG00000005279	pspc1	65	44.792	ENSPMAG00000004618	pspc1	87	44.211	Petromyzon_marinus
ENSAOCG00000005279	pspc1	83	70.833	ENSPCIG00000017680	PSPC1	88	69.937	Phascolarctos_cinereus
ENSAOCG00000005279	pspc1	99	80.190	ENSPFOG00000003362	pspc1	100	80.762	Poecilia_formosa
ENSAOCG00000005279	pspc1	82	54.566	ENSPLAG00000004407	-	56	53.528	Poecilia_latipinna
ENSAOCG00000005279	pspc1	100	80.189	ENSPLAG00000011540	pspc1	100	80.755	Poecilia_latipinna
ENSAOCG00000005279	pspc1	100	79.811	ENSPMEG00000008322	pspc1	100	80.377	Poecilia_mexicana
ENSAOCG00000005279	pspc1	82	54.691	ENSPMEG00000001025	-	55	53.528	Poecilia_mexicana
ENSAOCG00000005279	pspc1	100	79.434	ENSPREG00000007786	pspc1	100	80.000	Poecilia_reticulata
ENSAOCG00000005279	pspc1	78	73.256	ENSPPYG00000005186	PSPC1	85	76.179	Pongo_abelii
ENSAOCG00000005279	pspc1	88	65.762	ENSPCOG00000014364	PSPC1	88	66.667	Propithecus_coquereli
ENSAOCG00000005279	pspc1	88	68.815	ENSPVAG00000005036	PSPC1	92	67.068	Pteropus_vampyrus
ENSAOCG00000005279	pspc1	100	77.714	ENSPNYG00000008893	pspc1	100	77.083	Pundamilia_nyererei
ENSAOCG00000005279	pspc1	100	69.720	ENSPNAG00000016511	pspc1	100	70.412	Pygocentrus_nattereri
ENSAOCG00000005279	pspc1	80	71.889	ENSRNOG00000020782	Pspc1	88	74.818	Rattus_norvegicus
ENSAOCG00000005279	pspc1	83	70.460	ENSRBIG00000036057	PSPC1	91	80.556	Rhinopithecus_bieti
ENSAOCG00000005279	pspc1	83	70.460	ENSRROG00000036334	PSPC1	82	80.556	Rhinopithecus_roxellana
ENSAOCG00000005279	pspc1	78	59.251	ENSSBOG00000028172	PSPC1	90	78.261	Saimiri_boliviensis_boliviensis
ENSAOCG00000005279	pspc1	84	67.769	ENSSHAG00000004696	PSPC1	88	65.904	Sarcophilus_harrisii
ENSAOCG00000005279	pspc1	88	73.278	ENSSFOG00015001395	pspc1	99	75.532	Scleropages_formosus
ENSAOCG00000005279	pspc1	100	83.396	ENSSMAG00000001761	pspc1	100	82.649	Scophthalmus_maximus
ENSAOCG00000005279	pspc1	100	85.741	ENSSDUG00000010651	pspc1	100	86.852	Seriola_dumerili
ENSAOCG00000005279	pspc1	100	75.810	ENSSLDG00000004284	pspc1	100	75.283	Seriola_lalandi_dorsalis
ENSAOCG00000005279	pspc1	76	69.343	ENSSARG00000000888	PSPC1	89	64.092	Sorex_araneus
ENSAOCG00000005279	pspc1	87	51.627	ENSSPUG00000001136	-	64	49.675	Sphenodon_punctatus
ENSAOCG00000005279	pspc1	80	68.588	ENSSPUG00000008550	PSPC1	88	59.958	Sphenodon_punctatus
ENSAOCG00000005279	pspc1	100	93.774	ENSSPAG00000001921	pspc1	100	93.396	Stegastes_partitus
ENSAOCG00000005279	pspc1	78	73.256	ENSSSCG00000009569	PSPC1	85	79.697	Sus_scrofa
ENSAOCG00000005279	pspc1	88	68.134	ENSTGUG00000011295	PSPC1	99	68.750	Taeniopygia_guttata
ENSAOCG00000005279	pspc1	100	74.857	ENSTRUG00000011335	pspc1	100	73.905	Takifugu_rubripes
ENSAOCG00000005279	pspc1	100	73.855	ENSTNIG00000010358	pspc1	100	73.855	Tetraodon_nigroviridis
ENSAOCG00000005279	pspc1	87	59.915	ENSTBEG00000002361	PSPC1	88	59.539	Tupaia_belangeri
ENSAOCG00000005279	pspc1	85	69.869	ENSTTRG00000003343	PSPC1	90	69.485	Tursiops_truncatus
ENSAOCG00000005279	pspc1	71	72.131	ENSUAMG00000012309	PSPC1	82	81.053	Ursus_americanus
ENSAOCG00000005279	pspc1	83	70.241	ENSUMAG00000013993	PSPC1	91	80.247	Ursus_maritimus
ENSAOCG00000005279	pspc1	66	73.098	ENSVPAG00000010029	PSPC1	100	68.825	Vicugna_pacos
ENSAOCG00000005279	pspc1	78	73.256	ENSVVUG00000006414	PSPC1	84	80.556	Vulpes_vulpes
ENSAOCG00000005279	pspc1	96	71.084	ENSXCOG00000017438	pspc1	93	81.888	Xiphophorus_couchianus
ENSAOCG00000005279	pspc1	96	71.325	ENSXMAG00000007929	pspc1	93	82.143	Xiphophorus_maculatus