EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000006352 (Gene tree)
Gene ID: 111573882
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 15675 bases
Position: chrNXFZ01000597.1:311763-327437
Accession: 111573882
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000021460	UPF1_Zn_bind	PF09416.10	7.9e-75	1	1
ENSAOCP00000021516	UPF1_Zn_bind	PF09416.10	9.5e-75	1	1
ENSAOCP00000021460	ResIII	PF04851.15	2.6e-05	1	1
ENSAOCP00000021516	ResIII	PF04851.15	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000010438	-	3057	-	ENSAOCP00000021460	1018 (aa)	-	-
ENSAOCT00000010399	-	6715	XM_023278239	ENSAOCP00000021516	1101 (aa)	XP_023134007	UPI000C2FFF58

Gene Model

Click here to download ENSAOCG00000006352's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000006352's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000006352	-	100	92.825	ENSAOCG00000018519	upf1	100	93.280

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000006352	-	100	92.596	ENSG00000005007	UPF1	100	92.596	Homo_sapiens
ENSAOCG00000006352	-	100	93.309	ENSAPOG00000023773	upf1	100	93.309	Acanthochromis_polyacanthus
ENSAOCG00000006352	-	100	99.637	ENSAPOG00000010916	-	100	99.637	Acanthochromis_polyacanthus
ENSAOCG00000006352	-	100	92.014	ENSAMEG00000011474	UPF1	100	92.014	Ailuropoda_melanoleuca
ENSAOCG00000006352	-	100	94.839	ENSACIG00000010985	-	100	98.442	Amphilophus_citrinellus
ENSAOCG00000006352	-	100	93.370	ENSACIG00000019949	upf1	100	93.370	Amphilophus_citrinellus
ENSAOCG00000006352	-	100	92.825	ENSAPEG00000016344	upf1	100	93.280	Amphiprion_percula
ENSAOCG00000006352	-	100	99.909	ENSAPEG00000006292	-	100	99.909	Amphiprion_percula
ENSAOCG00000006352	-	100	99.364	ENSATEG00000016606	-	100	99.364	Anabas_testudineus
ENSAOCG00000006352	-	100	91.370	ENSATEG00000017867	upf1	100	92.397	Anabas_testudineus
ENSAOCG00000006352	-	100	91.522	ENSAPLG00000009175	UPF1	100	93.939	Anas_platyrhynchos
ENSAOCG00000006352	-	100	90.077	ENSANAG00000024107	UPF1	95	92.498	Aotus_nancymaae
ENSAOCG00000006352	-	100	93.279	ENSACLG00000007181	upf1	100	93.279	Astatotilapia_calliptera
ENSAOCG00000006352	-	100	99.002	ENSACLG00000022630	-	100	99.002	Astatotilapia_calliptera
ENSAOCG00000006352	-	100	95.014	ENSAMXG00000042187	upf1	100	95.195	Astyanax_mexicanus
ENSAOCG00000006352	-	100	92.028	ENSBTAG00000020922	UPF1	100	92.028	Bos_taurus
ENSAOCG00000006352	-	97	49.755	WBGene00004880	smg-2	99	49.493	Caenorhabditis_elegans
ENSAOCG00000006352	-	100	91.696	ENSCJAG00000019627	UPF1	100	91.696	Callithrix_jacchus
ENSAOCG00000006352	-	100	91.784	ENSCAFG00000014578	UPF1	100	91.784	Canis_familiaris
ENSAOCG00000006352	-	100	92.685	ENSCAFG00020012347	UPF1	100	92.685	Canis_lupus_dingo
ENSAOCG00000006352	-	100	92.934	ENSCHIG00000011018	UPF1	100	92.934	Capra_hircus
ENSAOCG00000006352	-	100	91.233	ENSTSYG00000008877	UPF1	98	93.637	Carlito_syrichta
ENSAOCG00000006352	-	100	91.137	ENSCAPG00000005758	UPF1	95	93.542	Cavia_aperea
ENSAOCG00000006352	-	100	92.722	ENSCPOG00000025463	UPF1	100	92.633	Cavia_porcellus
ENSAOCG00000006352	-	100	92.596	ENSCCAG00000032175	UPF1	100	92.596	Cebus_capucinus
ENSAOCG00000006352	-	100	91.426	ENSCATG00000040306	UPF1	97	94.084	Cercocebus_atys
ENSAOCG00000006352	-	100	91.426	ENSCLAG00000004037	UPF1	99	93.827	Chinchilla_lanigera
ENSAOCG00000006352	-	100	92.596	ENSCSAG00000005276	UPF1	100	92.596	Chlorocebus_sabaeus
ENSAOCG00000006352	-	100	92.735	ENSCPBG00000012513	UPF1	100	92.646	Chrysemys_picta_bellii
ENSAOCG00000006352	-	77	79.625	ENSCING00000021399	-	99	78.546	Ciona_intestinalis
ENSAOCG00000006352	-	99	73.226	ENSCSAVG00000006533	-	99	73.585	Ciona_savignyi
ENSAOCG00000006352	-	100	91.426	ENSCANG00000029819	UPF1	97	93.827	Colobus_angolensis_palliatus
ENSAOCG00000006352	-	100	92.473	ENSCGRG00001021067	Upf1	100	92.473	Cricetulus_griseus_chok1gshd
ENSAOCG00000006352	-	100	90.848	ENSCGRG00000013480	Upf1	98	93.257	Cricetulus_griseus_crigri
ENSAOCG00000006352	-	100	98.183	ENSCSEG00000016159	-	100	98.183	Cynoglossus_semilaevis
ENSAOCG00000006352	-	100	88.214	ENSCSEG00000017239	upf1	100	87.975	Cynoglossus_semilaevis
ENSAOCG00000006352	-	100	98.183	ENSCVAG00000010561	upf1	100	98.183	Cyprinodon_variegatus
ENSAOCG00000006352	-	100	94.379	ENSDARG00000016302	upf1	100	94.651	Danio_rerio
ENSAOCG00000006352	-	100	88.921	ENSDORG00000009984	Upf1	95	91.358	Dipodomys_ordii
ENSAOCG00000006352	-	86	71.714	FBgn0030354	Upf1	81	71.162	Drosophila_melanogaster
ENSAOCG00000006352	-	54	86.777	ENSEBUG00000010069	upf1	96	87.107	Eptatretus_burgeri
ENSAOCG00000006352	-	100	92.844	ENSEASG00005006549	UPF1	100	92.844	Equus_asinus_asinus
ENSAOCG00000006352	-	100	92.844	ENSECAG00000010639	UPF1	100	92.844	Equus_caballus
ENSAOCG00000006352	-	100	95.401	ENSELUG00000012916	-	100	95.401	Esox_lucius
ENSAOCG00000006352	-	100	92.780	ENSELUG00000020917	upf1	100	92.329	Esox_lucius
ENSAOCG00000006352	-	100	91.696	ENSFCAG00000009757	UPF1	100	91.696	Felis_catus
ENSAOCG00000006352	-	100	92.144	ENSFALG00000009312	UPF1	96	94.471	Ficedula_albicollis
ENSAOCG00000006352	-	100	91.329	ENSFDAG00000014816	UPF1	99	93.732	Fukomys_damarensis
ENSAOCG00000006352	-	100	89.794	ENSFHEG00000006428	upf1	100	89.356	Fundulus_heteroclitus
ENSAOCG00000006352	-	91	99.274	ENSFHEG00000016276	-	96	99.274	Fundulus_heteroclitus
ENSAOCG00000006352	-	100	95.238	ENSGMOG00000007541	upf1	100	95.238	Gadus_morhua
ENSAOCG00000006352	-	100	92.672	ENSGALG00000003220	UPF1	100	92.583	Gallus_gallus
ENSAOCG00000006352	-	63	94.669	ENSGAFG00000015443	-	85	94.669	Gambusia_affinis
ENSAOCG00000006352	-	100	98.183	ENSGAFG00000004831	upf1	100	98.183	Gambusia_affinis
ENSAOCG00000006352	-	100	93.243	ENSGAGG00000022217	UPF1	100	93.243	Gopherus_agassizii
ENSAOCG00000006352	-	100	92.405	ENSGGOG00000002608	UPF1	99	94.818	Gorilla_gorilla
ENSAOCG00000006352	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSAOCG00000006352	-	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSAOCG00000006352	-	100	91.431	ENSHGLG00000010900	UPF1	100	91.431	Heterocephalus_glaber_female
ENSAOCG00000006352	-	100	89.595	ENSHGLG00100005904	UPF1	96	92.023	Heterocephalus_glaber_male
ENSAOCG00000006352	-	100	98.094	ENSHCOG00000008918	upf1	100	98.094	Hippocampus_comes
ENSAOCG00000006352	-	100	95.014	ENSIPUG00000005108	UPF1	100	95.195	Ictalurus_punctatus
ENSAOCG00000006352	-	100	92.596	ENSSTOG00000009196	UPF1	100	92.596	Ictidomys_tridecemlineatus
ENSAOCG00000006352	-	100	91.467	ENSJJAG00000023151	Upf1	100	91.467	Jaculus_jaculus
ENSAOCG00000006352	-	100	98.728	ENSKMAG00000004962	upf1	100	98.728	Kryptolebias_marmoratus
ENSAOCG00000006352	-	100	98.639	ENSLBEG00000027848	-	100	98.639	Labrus_bergylta
ENSAOCG00000006352	-	100	91.846	ENSLBEG00000014862	upf1	100	92.473	Labrus_bergylta
ENSAOCG00000006352	-	68	94.684	ENSLACG00000008482	UPF1	100	94.699	Latimeria_chalumnae
ENSAOCG00000006352	-	100	96.094	ENSLOCG00000002072	upf1	100	96.094	Lepisosteus_oculatus
ENSAOCG00000006352	-	100	91.327	ENSLAFG00000014963	UPF1	100	91.327	Loxodonta_africana
ENSAOCG00000006352	-	100	92.349	ENSMFAG00000037748	UPF1	100	92.349	Macaca_fascicularis
ENSAOCG00000006352	-	100	92.103	ENSMMUG00000023286	UPF1	100	92.103	Macaca_mulatta
ENSAOCG00000006352	-	100	92.349	ENSMNEG00000000046	UPF1	100	92.349	Macaca_nemestrina
ENSAOCG00000006352	-	100	91.426	ENSMLEG00000028404	UPF1	99	93.827	Mandrillus_leucophaeus
ENSAOCG00000006352	-	100	98.820	ENSMAMG00000006231	-	100	98.820	Mastacembelus_armatus
ENSAOCG00000006352	-	100	92.218	ENSMAMG00000006229	upf1	100	92.844	Mastacembelus_armatus
ENSAOCG00000006352	-	100	92.273	ENSMZEG00005003489	upf1	100	92.543	Maylandia_zebra
ENSAOCG00000006352	-	100	99.002	ENSMZEG00005016386	-	100	99.002	Maylandia_zebra
ENSAOCG00000006352	-	100	91.049	ENSMGAG00000004745	UPF1	100	93.454	Meleagris_gallopavo
ENSAOCG00000006352	-	100	90.848	ENSMAUG00000011398	Upf1	95	93.257	Mesocricetus_auratus
ENSAOCG00000006352	-	100	92.507	ENSMICG00000001659	UPF1	100	92.507	Microcebus_murinus
ENSAOCG00000006352	-	100	91.571	ENSMOCG00000005699	Upf1	100	91.659	Microtus_ochrogaster
ENSAOCG00000006352	-	100	92.461	ENSMMOG00000007881	upf1	100	92.831	Mola_mola
ENSAOCG00000006352	-	100	93.866	ENSMMOG00000007537	-	99	96.555	Mola_mola
ENSAOCG00000006352	-	100	92.308	ENSMODG00000003689	UPF1	100	91.454	Monodelphis_domestica
ENSAOCG00000006352	-	100	97.285	ENSMALG00000018100	-	100	97.285	Monopterus_albus
ENSAOCG00000006352	-	100	92.461	ENSMALG00000000144	upf1	100	92.391	Monopterus_albus
ENSAOCG00000006352	-	100	92.384	MGP_CAROLIEiJ_G0031142	Upf1	100	92.384	Mus_caroli
ENSAOCG00000006352	-	100	92.384	ENSMUSG00000058301	Upf1	100	92.384	Mus_musculus
ENSAOCG00000006352	-	100	92.384	MGP_PahariEiJ_G0021607	Upf1	100	92.384	Mus_pahari
ENSAOCG00000006352	-	100	92.384	MGP_SPRETEiJ_G0032260	Upf1	100	92.384	Mus_spretus
ENSAOCG00000006352	-	100	92.685	ENSMPUG00000015516	UPF1	100	92.685	Mustela_putorius_furo
ENSAOCG00000006352	-	100	92.308	ENSMLUG00000012122	UPF1	99	92.480	Myotis_lucifugus
ENSAOCG00000006352	-	100	91.150	ENSNGAG00000024107	Upf1	100	91.150	Nannospalax_galili
ENSAOCG00000006352	-	100	96.184	ENSNBRG00000022069	-	100	97.961	Neolamprologus_brichardi
ENSAOCG00000006352	-	100	91.553	ENSNBRG00000000670	upf1	100	91.553	Neolamprologus_brichardi
ENSAOCG00000006352	-	100	85.977	ENSNLEG00000006062	UPF1	99	88.034	Nomascus_leucogenys
ENSAOCG00000006352	-	83	88.672	ENSMEUG00000014146	-	83	88.477	Notamacropus_eugenii
ENSAOCG00000006352	-	100	85.131	ENSOPRG00000014018	UPF1	99	87.716	Ochotona_princeps
ENSAOCG00000006352	-	100	92.806	ENSODEG00000012426	UPF1	100	92.716	Octodon_degus
ENSAOCG00000006352	-	100	92.453	ENSONIG00000010452	upf1	100	92.722	Oreochromis_niloticus
ENSAOCG00000006352	-	100	99.093	ENSONIG00000012729	-	100	99.093	Oreochromis_niloticus
ENSAOCG00000006352	-	100	91.681	ENSOANG00000004568	UPF1	100	90.733	Ornithorhynchus_anatinus
ENSAOCG00000006352	-	100	97.911	ENSORLG00000008453	upf1	100	97.911	Oryzias_latipes
ENSAOCG00000006352	-	100	97.822	ENSORLG00020014758	upf1	100	97.822	Oryzias_latipes_hni
ENSAOCG00000006352	-	100	97.822	ENSORLG00015010165	upf1	100	97.822	Oryzias_latipes_hsok
ENSAOCG00000006352	-	100	98.183	ENSOMEG00000003665	upf1	100	98.183	Oryzias_melastigma
ENSAOCG00000006352	-	100	92.685	ENSOGAG00000012866	UPF1	100	92.685	Otolemur_garnettii
ENSAOCG00000006352	-	96	90.993	ENSOARG00000010739	UPF1	100	90.901	Ovis_aries
ENSAOCG00000006352	-	100	91.426	ENSPPAG00000043884	UPF1	96	93.827	Pan_paniscus
ENSAOCG00000006352	-	100	91.696	ENSPPRG00000023470	UPF1	100	91.696	Panthera_pardus
ENSAOCG00000006352	-	100	90.458	ENSPTIG00000010159	UPF1	99	92.720	Panthera_tigris_altaica
ENSAOCG00000006352	-	100	92.349	ENSPTRG00000010721	UPF1	100	92.349	Pan_troglodytes
ENSAOCG00000006352	-	100	92.349	ENSPANG00000008847	UPF1	100	92.349	Papio_anubis
ENSAOCG00000006352	-	91	95.337	ENSPKIG00000006069	upf1	95	96.274	Paramormyrops_kingsleyae
ENSAOCG00000006352	-	74	89.700	ENSPSIG00000009491	UPF1	100	93.481	Pelodiscus_sinensis
ENSAOCG00000006352	-	100	91.403	ENSPMGG00000017327	upf1	100	91.493	Periophthalmus_magnuspinnatus
ENSAOCG00000006352	-	100	91.571	ENSPEMG00000001085	Upf1	100	91.571	Peromyscus_maniculatus_bairdii
ENSAOCG00000006352	-	100	87.658	ENSPMAG00000001206	upf1	100	87.207	Petromyzon_marinus
ENSAOCG00000006352	-	100	92.768	ENSPCIG00000006156	UPF1	100	92.768	Phascolarctos_cinereus
ENSAOCG00000006352	-	100	91.539	ENSPLAG00000018155	-	100	91.089	Poecilia_latipinna
ENSAOCG00000006352	-	100	98.274	ENSPLAG00000016232	-	100	98.274	Poecilia_latipinna
ENSAOCG00000006352	-	100	92.112	ENSPMEG00000011443	-	100	91.644	Poecilia_mexicana
ENSAOCG00000006352	-	100	98.185	ENSPMEG00000016319	-	100	98.185	Poecilia_mexicana
ENSAOCG00000006352	-	100	98.002	ENSPREG00000011247	-	100	98.002	Poecilia_reticulata
ENSAOCG00000006352	-	100	91.824	ENSPREG00000009940	upf1	100	91.375	Poecilia_reticulata
ENSAOCG00000006352	-	100	86.837	ENSPPYG00000009752	UPF1	100	86.661	Pongo_abelii
ENSAOCG00000006352	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSAOCG00000006352	-	100	92.185	ENSPCOG00000023813	UPF1	100	92.185	Propithecus_coquereli
ENSAOCG00000006352	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSAOCG00000006352	-	100	92.273	ENSPNYG00000003694	upf1	100	92.543	Pundamilia_nyererei
ENSAOCG00000006352	-	100	98.911	ENSPNYG00000016731	-	100	98.911	Pundamilia_nyererei
ENSAOCG00000006352	-	100	94.560	ENSPNAG00000025614	upf1	100	94.742	Pygocentrus_nattereri
ENSAOCG00000006352	-	100	92.384	ENSRNOG00000020134	Upf1	100	92.384	Rattus_norvegicus
ENSAOCG00000006352	-	100	89.017	ENSRBIG00000013894	UPF1	98	94.645	Rhinopithecus_bieti
ENSAOCG00000006352	-	100	91.426	ENSRROG00000040935	UPF1	98	94.645	Rhinopithecus_roxellana
ENSAOCG00000006352	-	77	56.821	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSAOCG00000006352	-	100	91.426	ENSSBOG00000023632	UPF1	96	94.084	Saimiri_boliviensis_boliviensis
ENSAOCG00000006352	-	100	91.154	ENSSHAG00000010499	UPF1	100	93.649	Sarcophilus_harrisii
ENSAOCG00000006352	-	100	95.735	ENSSFOG00015021095	upf1	100	95.735	Scleropages_formosus
ENSAOCG00000006352	-	100	91.308	ENSSMAG00000005055	upf1	100	92.025	Scophthalmus_maximus
ENSAOCG00000006352	-	100	99.274	ENSSMAG00000021018	-	100	99.274	Scophthalmus_maximus
ENSAOCG00000006352	-	100	92.039	ENSSDUG00000013320	upf1	100	92.755	Seriola_dumerili
ENSAOCG00000006352	-	100	99.456	ENSSDUG00000009629	-	100	99.456	Seriola_dumerili
ENSAOCG00000006352	-	100	99.456	ENSSLDG00000006878	-	100	99.456	Seriola_lalandi_dorsalis
ENSAOCG00000006352	-	100	92.870	ENSSLDG00000020868	upf1	100	93.231	Seriola_lalandi_dorsalis
ENSAOCG00000006352	-	100	93.076	ENSSPUG00000010538	UPF1	100	93.076	Sphenodon_punctatus
ENSAOCG00000006352	-	100	99.273	ENSSPAG00000011521	-	100	99.273	Stegastes_partitus
ENSAOCG00000006352	-	100	91.123	ENSSPAG00000000003	upf1	100	91.008	Stegastes_partitus
ENSAOCG00000006352	-	100	92.844	ENSSSCG00000039301	UPF1	99	94.732	Sus_scrofa
ENSAOCG00000006352	-	82	86.809	ENSTGUG00000001057	UPF1	100	91.124	Taeniopygia_guttata
ENSAOCG00000006352	-	100	92.559	ENSTRUG00000000150	upf1	100	92.377	Takifugu_rubripes
ENSAOCG00000006352	-	100	97.366	ENSTRUG00000005131	-	100	97.366	Takifugu_rubripes
ENSAOCG00000006352	-	100	89.267	ENSTTRG00000011544	UPF1	100	89.177	Tursiops_truncatus
ENSAOCG00000006352	-	100	92.596	ENSUAMG00000007093	UPF1	100	92.596	Ursus_americanus
ENSAOCG00000006352	-	100	92.502	ENSUMAG00000006652	UPF1	99	95.238	Ursus_maritimus
ENSAOCG00000006352	-	100	92.685	ENSVVUG00000007797	UPF1	100	92.685	Vulpes_vulpes
ENSAOCG00000006352	-	100	79.736	ENSXETG00000013602	upf1	100	79.736	Xenopus_tropicalis
ENSAOCG00000006352	-	97	91.635	ENSXCOG00000015275	-	96	91.635	Xiphophorus_couchianus
ENSAOCG00000006352	-	100	95.326	ENSXCOG00000005764	-	100	98.256	Xiphophorus_couchianus
ENSAOCG00000006352	-	100	91.826	ENSXMAG00000001703	-	100	91.826	Xiphophorus_maculatus
ENSAOCG00000006352	-	100	98.004	ENSXMAG00000002540	-	100	98.004	Xiphophorus_maculatus