EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000006414 (Gene tree)
Gene ID: 111574023
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 4083 bases
Position: chrNXFZ01000597.1:295304-299386
Accession: 111574023
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000021542	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000010240	-	1430	XM_023278414	ENSAOCP00000021542	148 (aa)	XP_023134182	UPI000C315143

Gene Model

Click here to download ENSAOCG00000006414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000006414's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000006414	lsm4	73	34.259	ENSAOCG00000016759	-	94	32.039
ENSAOCG00000006414	lsm4	52	33.766	ENSAOCG00000014654	-	60	34.667
ENSAOCG00000006414	lsm4	52	33.766	ENSAOCG00000015618	LSM10	60	34.667
ENSAOCG00000006414	lsm4	64	31.959	ENSAOCG00000006949	si:ch73-14h10.2	75	31.959
ENSAOCG00000006414	lsm4	52	33.766	ENSAOCG00000015607	LSM10	57	34.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000006414	lsm4	59	98.864	ENSG00000130520	LSM4	99	77.622	Homo_sapiens
ENSAOCG00000006414	lsm4	100	98.013	ENSAPOG00000005643	lsm4	100	98.013	Acanthochromis_polyacanthus
ENSAOCG00000006414	lsm4	59	98.851	ENSAMEG00000011162	LSM4	93	77.465	Ailuropoda_melanoleuca
ENSAOCG00000006414	lsm4	100	99.329	ENSAPEG00000006238	lsm4	100	99.329	Amphiprion_percula
ENSAOCG00000006414	lsm4	100	92.763	ENSATEG00000016559	lsm4	100	93.421	Anabas_testudineus
ENSAOCG00000006414	lsm4	59	98.864	ENSANAG00000034659	LSM4	99	77.622	Aotus_nancymaae
ENSAOCG00000006414	lsm4	100	95.946	ENSACLG00000022738	lsm4	100	95.946	Astatotilapia_calliptera
ENSAOCG00000006414	lsm4	100	87.248	ENSAMXG00000016932	lsm4	100	78.378	Astyanax_mexicanus
ENSAOCG00000006414	lsm4	59	98.864	ENSBTAG00000008578	LSM4	99	77.622	Bos_taurus
ENSAOCG00000006414	lsm4	56	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSAOCG00000006414	lsm4	59	98.864	ENSCJAG00000014171	LSM4	99	77.622	Callithrix_jacchus
ENSAOCG00000006414	lsm4	59	98.864	ENSCAFG00000014900	LSM4	90	77.622	Canis_familiaris
ENSAOCG00000006414	lsm4	59	98.864	ENSCAFG00020012137	LSM4	99	77.622	Canis_lupus_dingo
ENSAOCG00000006414	lsm4	59	98.851	ENSCHIG00000010928	LSM4	90	77.465	Capra_hircus
ENSAOCG00000006414	lsm4	59	97.727	ENSTSYG00000030906	LSM4	99	76.923	Carlito_syrichta
ENSAOCG00000006414	lsm4	59	97.727	ENSCAPG00000014140	LSM4	96	77.857	Cavia_aperea
ENSAOCG00000006414	lsm4	59	97.727	ENSCPOG00000024117	LSM4	96	77.857	Cavia_porcellus
ENSAOCG00000006414	lsm4	59	98.864	ENSCCAG00000036308	LSM4	99	77.622	Cebus_capucinus
ENSAOCG00000006414	lsm4	59	98.864	ENSCATG00000029311	LSM4	99	77.622	Cercocebus_atys
ENSAOCG00000006414	lsm4	59	98.864	ENSCLAG00000010828	LSM4	99	78.322	Chinchilla_lanigera
ENSAOCG00000006414	lsm4	59	98.864	ENSCSAG00000005370	LSM4	99	77.622	Chlorocebus_sabaeus
ENSAOCG00000006414	lsm4	59	100.000	ENSCPBG00000012925	LSM4	72	97.980	Chrysemys_picta_bellii
ENSAOCG00000006414	lsm4	58	93.023	ENSCING00000007519	-	72	92.391	Ciona_intestinalis
ENSAOCG00000006414	lsm4	58	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSAOCG00000006414	lsm4	59	98.864	ENSCANG00000043686	LSM4	99	77.622	Colobus_angolensis_palliatus
ENSAOCG00000006414	lsm4	59	95.455	ENSCGRG00001014436	Lsm4	99	74.825	Cricetulus_griseus_chok1gshd
ENSAOCG00000006414	lsm4	59	95.402	ENSCGRG00000009398	Lsm4	99	74.648	Cricetulus_griseus_crigri
ENSAOCG00000006414	lsm4	100	83.108	ENSCSEG00000016127	lsm4	100	91.892	Cynoglossus_semilaevis
ENSAOCG00000006414	lsm4	100	91.216	ENSCVAG00000010601	lsm4	100	91.216	Cyprinodon_variegatus
ENSAOCG00000006414	lsm4	90	90.226	ENSCVAG00000021828	lsm4	98	90.226	Cyprinodon_variegatus
ENSAOCG00000006414	lsm4	95	83.673	ENSDARG00000023852	lsm4	98	83.571	Danio_rerio
ENSAOCG00000006414	lsm4	59	97.727	ENSDORG00000024225	Lsm4	99	76.923	Dipodomys_ordii
ENSAOCG00000006414	lsm4	68	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSAOCG00000006414	lsm4	51	93.333	ENSEBUG00000003639	-	64	77.083	Eptatretus_burgeri
ENSAOCG00000006414	lsm4	59	98.864	ENSECAG00000010141	LSM4	56	77.622	Equus_caballus
ENSAOCG00000006414	lsm4	93	89.130	ENSELUG00000012821	lsm4	100	89.130	Esox_lucius
ENSAOCG00000006414	lsm4	59	98.864	ENSFCAG00000040580	LSM4	99	77.622	Felis_catus
ENSAOCG00000006414	lsm4	59	100.000	ENSFALG00000009478	LSM4	71	97.959	Ficedula_albicollis
ENSAOCG00000006414	lsm4	59	98.851	ENSFDAG00000010124	LSM4	99	78.169	Fukomys_damarensis
ENSAOCG00000006414	lsm4	99	80.921	ENSGMOG00000007729	lsm4	99	78.667	Gadus_morhua
ENSAOCG00000006414	lsm4	59	100.000	ENSGALG00000003385	LSM4	72	97.980	Gallus_gallus
ENSAOCG00000006414	lsm4	100	89.865	ENSGAFG00000004903	lsm4	97	87.218	Gambusia_affinis
ENSAOCG00000006414	lsm4	100	88.667	ENSGACG00000008140	lsm4	100	89.333	Gasterosteus_aculeatus
ENSAOCG00000006414	lsm4	59	100.000	ENSGAGG00000017812	LSM4	72	97.980	Gopherus_agassizii
ENSAOCG00000006414	lsm4	59	98.864	ENSGGOG00000012914	-	99	77.622	Gorilla_gorilla
ENSAOCG00000006414	lsm4	100	95.270	ENSHBUG00000008858	lsm4	80	95.270	Haplochromis_burtoni
ENSAOCG00000006414	lsm4	97	75.862	ENSHGLG00000006568	LSM4	99	76.923	Heterocephalus_glaber_female
ENSAOCG00000006414	lsm4	62	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSAOCG00000006414	lsm4	100	92.568	ENSHCOG00000008819	lsm4	100	92.568	Hippocampus_comes
ENSAOCG00000006414	lsm4	100	87.248	ENSIPUG00000005368	Lsm4	100	79.054	Ictalurus_punctatus
ENSAOCG00000006414	lsm4	59	98.864	ENSSTOG00000016494	LSM4	99	77.622	Ictidomys_tridecemlineatus
ENSAOCG00000006414	lsm4	59	96.591	ENSJJAG00000017420	Lsm4	99	76.224	Jaculus_jaculus
ENSAOCG00000006414	lsm4	100	89.865	ENSKMAG00000005073	lsm4	100	92.568	Kryptolebias_marmoratus
ENSAOCG00000006414	lsm4	100	97.315	ENSLBEG00000027930	lsm4	100	97.315	Labrus_bergylta
ENSAOCG00000006414	lsm4	97	81.119	ENSLACG00000015861	LSM4	71	97.980	Latimeria_chalumnae
ENSAOCG00000006414	lsm4	86	91.406	ENSLOCG00000002025	lsm4	100	84.564	Lepisosteus_oculatus
ENSAOCG00000006414	lsm4	59	97.701	ENSLAFG00000017459	LSM4	98	76.056	Loxodonta_africana
ENSAOCG00000006414	lsm4	59	98.864	ENSMFAG00000031194	LSM4	99	77.622	Macaca_fascicularis
ENSAOCG00000006414	lsm4	59	98.864	ENSMMUG00000004405	LSM4	99	77.622	Macaca_mulatta
ENSAOCG00000006414	lsm4	59	98.864	ENSMNEG00000042899	LSM4	99	77.622	Macaca_nemestrina
ENSAOCG00000006414	lsm4	59	98.864	ENSMLEG00000027948	LSM4	99	77.622	Mandrillus_leucophaeus
ENSAOCG00000006414	lsm4	100	93.243	ENSMAMG00000006190	lsm4	100	93.243	Mastacembelus_armatus
ENSAOCG00000006414	lsm4	100	95.270	ENSMZEG00005016420	lsm4	100	95.270	Maylandia_zebra
ENSAOCG00000006414	lsm4	92	76.087	ENSMGAG00000004976	LSM4	71	97.959	Meleagris_gallopavo
ENSAOCG00000006414	lsm4	67	95.960	ENSMICG00000000222	LSM4	99	76.923	Microcebus_murinus
ENSAOCG00000006414	lsm4	59	95.455	ENSMOCG00000020861	Lsm4	99	75.524	Microtus_ochrogaster
ENSAOCG00000006414	lsm4	100	92.568	ENSMALG00000018159	lsm4	100	92.568	Monopterus_albus
ENSAOCG00000006414	lsm4	59	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	75.524	Mus_caroli
ENSAOCG00000006414	lsm4	59	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSAOCG00000006414	lsm4	59	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	75.524	Mus_pahari
ENSAOCG00000006414	lsm4	59	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	75.524	Mus_spretus
ENSAOCG00000006414	lsm4	59	98.864	ENSMPUG00000015589	LSM4	99	77.622	Mustela_putorius_furo
ENSAOCG00000006414	lsm4	59	98.851	ENSMLUG00000004010	LSM4	98	77.465	Myotis_lucifugus
ENSAOCG00000006414	lsm4	59	95.455	ENSNGAG00000008644	Lsm4	99	75.524	Nannospalax_galili
ENSAOCG00000006414	lsm4	73	98.148	ENSNBRG00000022150	lsm4	67	98.148	Neolamprologus_brichardi
ENSAOCG00000006414	lsm4	52	97.403	ENSOPRG00000005575	LSM4	98	71.094	Ochotona_princeps
ENSAOCG00000006414	lsm4	59	98.864	ENSODEG00000020549	-	99	77.622	Octodon_degus
ENSAOCG00000006414	lsm4	97	60.690	ENSODEG00000011712	-	98	46.853	Octodon_degus
ENSAOCG00000006414	lsm4	59	88.636	ENSODEG00000004519	-	99	68.531	Octodon_degus
ENSAOCG00000006414	lsm4	100	95.946	ENSONIG00000012724	lsm4	100	95.946	Oreochromis_niloticus
ENSAOCG00000006414	lsm4	59	94.505	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSAOCG00000006414	lsm4	100	91.892	ENSORLG00000008391	lsm4	100	91.892	Oryzias_latipes
ENSAOCG00000006414	lsm4	100	92.568	ENSORLG00020014829	lsm4	100	92.568	Oryzias_latipes_hni
ENSAOCG00000006414	lsm4	100	91.892	ENSORLG00015010205	lsm4	100	91.892	Oryzias_latipes_hsok
ENSAOCG00000006414	lsm4	100	90.541	ENSOMEG00000003606	lsm4	100	90.541	Oryzias_melastigma
ENSAOCG00000006414	lsm4	66	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSAOCG00000006414	lsm4	86	74.219	ENSOARG00000012553	LSM4	96	76.562	Ovis_aries
ENSAOCG00000006414	lsm4	59	98.864	ENSPPAG00000044045	-	99	77.622	Pan_paniscus
ENSAOCG00000006414	lsm4	59	98.864	ENSPPRG00000018264	LSM4	99	77.622	Panthera_pardus
ENSAOCG00000006414	lsm4	59	98.851	ENSPTIG00000006306	LSM4	99	77.465	Panthera_tigris_altaica
ENSAOCG00000006414	lsm4	59	98.864	ENSPTRG00000031470	LSM4	99	77.622	Pan_troglodytes
ENSAOCG00000006414	lsm4	59	98.864	ENSPANG00000014399	LSM4	99	77.622	Papio_anubis
ENSAOCG00000006414	lsm4	100	86.577	ENSPKIG00000006154	lsm4	100	86.577	Paramormyrops_kingsleyae
ENSAOCG00000006414	lsm4	59	100.000	ENSPSIG00000012358	LSM4	72	97.959	Pelodiscus_sinensis
ENSAOCG00000006414	lsm4	59	95.455	ENSPEMG00000001358	Lsm4	99	75.524	Peromyscus_maniculatus_bairdii
ENSAOCG00000006414	lsm4	100	89.865	ENSPFOG00000000570	lsm4	76	89.865	Poecilia_formosa
ENSAOCG00000006414	lsm4	100	89.865	ENSPLAG00000016267	lsm4	100	89.865	Poecilia_latipinna
ENSAOCG00000006414	lsm4	100	89.865	ENSPMEG00000016378	lsm4	100	89.865	Poecilia_mexicana
ENSAOCG00000006414	lsm4	100	90.541	ENSPREG00000011290	lsm4	76	90.541	Poecilia_reticulata
ENSAOCG00000006414	lsm4	59	98.864	ENSPPYG00000009736	LSM4	99	77.622	Pongo_abelii
ENSAOCG00000006414	lsm4	67	95.960	ENSPCOG00000019837	LSM4	99	76.923	Propithecus_coquereli
ENSAOCG00000006414	lsm4	59	98.864	ENSPVAG00000015383	LSM4	99	77.622	Pteropus_vampyrus
ENSAOCG00000006414	lsm4	100	95.270	ENSPNYG00000016794	lsm4	100	95.270	Pundamilia_nyererei
ENSAOCG00000006414	lsm4	95	89.286	ENSPNAG00000016598	lsm4	99	89.286	Pygocentrus_nattereri
ENSAOCG00000006414	lsm4	59	95.455	ENSRNOG00000019572	Lsm4	99	75.524	Rattus_norvegicus
ENSAOCG00000006414	lsm4	59	98.864	ENSRBIG00000024717	LSM4	99	77.622	Rhinopithecus_bieti
ENSAOCG00000006414	lsm4	59	98.864	ENSRROG00000045706	LSM4	99	77.622	Rhinopithecus_roxellana
ENSAOCG00000006414	lsm4	56	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSAOCG00000006414	lsm4	50	98.649	ENSSBOG00000022455	LSM4	98	75.194	Saimiri_boliviensis_boliviensis
ENSAOCG00000006414	lsm4	59	100.000	ENSSHAG00000011559	LSM4	99	77.622	Sarcophilus_harrisii
ENSAOCG00000006414	lsm4	100	86.577	ENSSFOG00015021067	lsm4	100	86.577	Scleropages_formosus
ENSAOCG00000006414	lsm4	100	83.333	ENSSMAG00000021020	lsm4	100	90.667	Scophthalmus_maximus
ENSAOCG00000006414	lsm4	100	87.425	ENSSDUG00000009588	lsm4	100	87.425	Seriola_dumerili
ENSAOCG00000006414	lsm4	100	86.905	ENSSLDG00000006827	lsm4	100	86.905	Seriola_lalandi_dorsalis
ENSAOCG00000006414	lsm4	59	100.000	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSAOCG00000006414	lsm4	100	98.013	ENSSPAG00000011615	lsm4	100	98.013	Stegastes_partitus
ENSAOCG00000006414	lsm4	59	98.864	ENSSSCG00000034314	LSM4	99	77.622	Sus_scrofa
ENSAOCG00000006414	lsm4	100	91.216	ENSTRUG00000021737	lsm4	100	91.216	Takifugu_rubripes
ENSAOCG00000006414	lsm4	100	85.906	ENSTNIG00000010191	lsm4	100	85.906	Tetraodon_nigroviridis
ENSAOCG00000006414	lsm4	74	94.545	ENSUAMG00000000665	LSM4	91	94.545	Ursus_americanus
ENSAOCG00000006414	lsm4	59	98.864	ENSUMAG00000009013	LSM4	99	77.622	Ursus_maritimus
ENSAOCG00000006414	lsm4	59	98.851	ENSVVUG00000008136	LSM4	70	77.465	Vulpes_vulpes
ENSAOCG00000006414	lsm4	66	96.939	ENSXETG00000024933	lsm4	71	96.939	Xenopus_tropicalis
ENSAOCG00000006414	lsm4	100	89.189	ENSXMAG00000026672	lsm4	76	89.189	Xiphophorus_maculatus