EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAOCG00000008873 (Gene tree)
Gene ID: 111569466
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 18220 bases
Position: chrNXFZ01002377.1:103188-121407
Accession: 111569466
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000005381	RRM_1	PF00076.22	7.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000006414	-	3156	XM_023271602	ENSAOCP00000005381	406 (aa)	XP_023127370	UPI000C309AD0

Gene Model

Click here to download ENSAOCG00000008873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000008873's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000008873	rbm42	100	98.276	ENSAPOG00000015109	rbm42	100	98.276	Acanthochromis_polyacanthus
ENSAOCG00000008873	rbm42	100	83.990	ENSACIG00000010771	rbm42	100	83.990	Amphilophus_citrinellus
ENSAOCG00000008873	rbm42	100	100.000	ENSAPEG00000012051	rbm42	99	100.000	Amphiprion_percula
ENSAOCG00000008873	rbm42	100	87.685	ENSATEG00000000536	rbm42	100	87.685	Anabas_testudineus
ENSAOCG00000008873	rbm42	100	86.946	ENSACLG00000004988	rbm42	100	87.224	Astatotilapia_calliptera
ENSAOCG00000008873	rbm42	100	75.721	ENSAMXG00000016545	rbm42	100	74.279	Astyanax_mexicanus
ENSAOCG00000008873	rbm42	97	82.872	ENSCSEG00000010248	rbm42	100	83.879	Cynoglossus_semilaevis
ENSAOCG00000008873	rbm42	100	81.707	ENSCVAG00000015589	rbm42	100	81.707	Cyprinodon_variegatus
ENSAOCG00000008873	rbm42	100	66.588	ENSDARG00000039910	rbm42	100	70.218	Danio_rerio
ENSAOCG00000008873	rbm42	100	73.286	ENSELUG00000022403	rbm42	100	73.349	Esox_lucius
ENSAOCG00000008873	rbm42	65	79.487	ENSFHEG00000006764	rbm42	91	80.727	Fundulus_heteroclitus
ENSAOCG00000008873	rbm42	100	74.029	ENSGMOG00000012660	rbm42	100	72.506	Gadus_morhua
ENSAOCG00000008873	rbm42	76	78.205	ENSGAFG00000009059	rbm42	99	80.583	Gambusia_affinis
ENSAOCG00000008873	rbm42	100	83.744	ENSGACG00000004170	rbm42	100	83.251	Gasterosteus_aculeatus
ENSAOCG00000008873	rbm42	100	86.946	ENSHBUG00000011141	rbm42	100	86.946	Haplochromis_burtoni
ENSAOCG00000008873	rbm42	100	78.922	ENSHCOG00000021214	rbm42	100	80.392	Hippocampus_comes
ENSAOCG00000008873	rbm42	100	73.460	ENSIPUG00000022365	rbm42	99	72.512	Ictalurus_punctatus
ENSAOCG00000008873	rbm42	91	78.437	ENSKMAG00000015287	rbm42	99	80.323	Kryptolebias_marmoratus
ENSAOCG00000008873	rbm42	100	83.374	ENSLBEG00000017547	rbm42	100	83.374	Labrus_bergylta
ENSAOCG00000008873	rbm42	84	82.948	ENSLBEG00000004578	-	96	82.948	Labrus_bergylta
ENSAOCG00000008873	rbm42	100	68.558	ENSLOCG00000003368	rbm42	100	68.720	Lepisosteus_oculatus
ENSAOCG00000008873	rbm42	100	89.409	ENSMAMG00000006708	rbm42	100	89.409	Mastacembelus_armatus
ENSAOCG00000008873	rbm42	100	86.946	ENSMZEG00005025234	rbm42	100	87.224	Maylandia_zebra
ENSAOCG00000008873	rbm42	91	88.889	ENSMALG00000015720	rbm42	100	88.889	Monopterus_albus
ENSAOCG00000008873	rbm42	100	87.531	ENSONIG00000008029	rbm42	100	87.531	Oreochromis_niloticus
ENSAOCG00000008873	rbm42	100	63.658	ENSORLG00020022507	rbm42	100	60.369	Oryzias_latipes_hni
ENSAOCG00000008873	rbm42	100	81.773	ENSORLG00015000659	rbm42	100	81.773	Oryzias_latipes_hsok
ENSAOCG00000008873	rbm42	70	74.737	ENSOMEG00000014332	rbm42	96	80.695	Oryzias_melastigma
ENSAOCG00000008873	rbm42	100	74.760	ENSPKIG00000015165	rbm42	100	73.494	Paramormyrops_kingsleyae
ENSAOCG00000008873	rbm42	93	65.441	ENSPMGG00000003569	rbm42	100	98.571	Periophthalmus_magnuspinnatus
ENSAOCG00000008873	rbm42	52	54.386	ENSPMAG00000008633	rbm42	100	48.711	Petromyzon_marinus
ENSAOCG00000008873	rbm42	100	79.854	ENSPFOG00000007701	rbm42	100	81.553	Poecilia_formosa
ENSAOCG00000008873	rbm42	100	79.854	ENSPLAG00000009405	rbm42	100	81.311	Poecilia_latipinna
ENSAOCG00000008873	rbm42	100	80.244	ENSPMEG00000010375	rbm42	100	81.951	Poecilia_mexicana
ENSAOCG00000008873	rbm42	100	80.097	ENSPREG00000018102	rbm42	100	81.796	Poecilia_reticulata
ENSAOCG00000008873	rbm42	100	86.700	ENSPNYG00000014460	rbm42	100	86.978	Pundamilia_nyererei
ENSAOCG00000008873	rbm42	100	75.297	ENSPNAG00000009961	rbm42	100	73.508	Pygocentrus_nattereri
ENSAOCG00000008873	rbm42	100	72.897	ENSSFOG00015019227	rbm42	100	72.706	Scleropages_formosus
ENSAOCG00000008873	rbm42	100	85.995	ENSSMAG00000011935	rbm42	100	85.995	Scophthalmus_maximus
ENSAOCG00000008873	rbm42	100	89.901	ENSSDUG00000004033	rbm42	100	89.901	Seriola_dumerili
ENSAOCG00000008873	rbm42	100	78.325	ENSSLDG00000009918	rbm42	100	96.471	Seriola_lalandi_dorsalis
ENSAOCG00000008873	rbm42	100	97.044	ENSSPAG00000019871	rbm42	100	97.044	Stegastes_partitus
ENSAOCG00000008873	rbm42	100	80.049	ENSTRUG00000024586	-	76	78.571	Takifugu_rubripes
ENSAOCG00000008873	rbm42	99	69.091	ENSTNIG00000011669	rbm42	100	70.522	Tetraodon_nigroviridis
ENSAOCG00000008873	rbm42	100	56.236	ENSXETG00000017599	rbm42	100	58.548	Xenopus_tropicalis
ENSAOCG00000008873	rbm42	100	79.369	ENSXMAG00000012827	rbm42	100	81.068	Xiphophorus_maculatus