EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000014097 (Gene tree)
Gene ID: 111562863
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 22117 bases
Position: chrNXFZ01006193.1:267504-289620
Accession: 111562863
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000025838	XRN_N	PF03159.18	1.7e-96	1	1
ENSAOCP00000009607	XRN_N	PF03159.18	1.7e-96	1	1
ENSAOCP00000009536	XRN_N	PF03159.18	5.8e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000016284	-	1464	-	ENSAOCP00000009536	487 (aa)	-	-
ENSAOCT00000016326	-	4782	-	ENSAOCP00000025838	1593 (aa)	-	-
ENSAOCT00000029485	-	5049	XM_023261638	ENSAOCP00000009607	1682 (aa)	XP_023117406	-

Gene Model

Click here to download ENSAOCG00000014097's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000014097's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000014097	xrn1	80	51.220	ENSAOCG00000023632	xrn2	70	41.108

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000014097	xrn1	95	69.076	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSAOCG00000014097	xrn1	94	98.025	ENSAPOG00000000622	xrn1	100	94.510	Acanthochromis_polyacanthus
ENSAOCG00000014097	xrn1	86	85.246	ENSAMEG00000012538	XRN1	95	70.093	Ailuropoda_melanoleuca
ENSAOCG00000014097	xrn1	100	84.752	ENSACIG00000001057	xrn1	99	90.222	Amphilophus_citrinellus
ENSAOCG00000014097	xrn1	100	95.017	ENSAPEG00000006620	xrn1	99	96.594	Amphiprion_percula
ENSAOCG00000014097	xrn1	95	84.651	ENSATEG00000009752	xrn1	100	84.806	Anabas_testudineus
ENSAOCG00000014097	xrn1	97	70.607	ENSAPLG00000004905	XRN1	94	70.607	Anas_platyrhynchos
ENSAOCG00000014097	xrn1	98	69.099	ENSACAG00000004985	XRN1	94	69.231	Anolis_carolinensis
ENSAOCG00000014097	xrn1	95	69.679	ENSANAG00000029013	XRN1	99	73.763	Aotus_nancymaae
ENSAOCG00000014097	xrn1	100	84.128	ENSACLG00000004806	xrn1	99	84.070	Astatotilapia_calliptera
ENSAOCG00000014097	xrn1	100	70.122	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSAOCG00000014097	xrn1	86	83.607	ENSBTAG00000011524	XRN1	100	61.133	Bos_taurus
ENSAOCG00000014097	xrn1	84	60.656	WBGene00012730	xrn-1	83	35.933	Caenorhabditis_elegans
ENSAOCG00000014097	xrn1	95	69.478	ENSCJAG00000001872	XRN1	99	61.910	Callithrix_jacchus
ENSAOCG00000014097	xrn1	96	70.625	ENSCAFG00000007783	XRN1	95	70.625	Canis_familiaris
ENSAOCG00000014097	xrn1	96	70.625	ENSCAFG00020009120	XRN1	99	76.341	Canis_lupus_dingo
ENSAOCG00000014097	xrn1	98	71.155	ENSCHIG00000019192	XRN1	94	71.258	Capra_hircus
ENSAOCG00000014097	xrn1	95	67.126	ENSTSYG00000002705	XRN1	100	61.438	Carlito_syrichta
ENSAOCG00000014097	xrn1	65	86.667	ENSCAPG00000004604	-	99	62.625	Cavia_aperea
ENSAOCG00000014097	xrn1	95	69.478	ENSCCAG00000034800	XRN1	99	77.901	Cebus_capucinus
ENSAOCG00000014097	xrn1	95	69.478	ENSCATG00000041794	XRN1	100	61.060	Cercocebus_atys
ENSAOCG00000014097	xrn1	95	67.470	ENSCLAG00000001451	XRN1	99	78.537	Chinchilla_lanigera
ENSAOCG00000014097	xrn1	95	69.679	ENSCSAG00000011265	XRN1	100	60.668	Chlorocebus_sabaeus
ENSAOCG00000014097	xrn1	54	94.805	ENSCHOG00000013961	-	52	94.805	Choloepus_hoffmanni
ENSAOCG00000014097	xrn1	94	53.659	ENSCING00000001334	-	95	71.816	Ciona_intestinalis
ENSAOCG00000014097	xrn1	98	54.059	ENSCSAVG00000008584	-	93	50.450	Ciona_savignyi
ENSAOCG00000014097	xrn1	95	69.679	ENSCANG00000037495	XRN1	99	77.901	Colobus_angolensis_palliatus
ENSAOCG00000014097	xrn1	95	68.110	ENSCGRG00001019411	Xrn1	99	78.855	Cricetulus_griseus_chok1gshd
ENSAOCG00000014097	xrn1	95	68.110	ENSCGRG00000012464	Xrn1	99	78.855	Cricetulus_griseus_crigri
ENSAOCG00000014097	xrn1	100	74.854	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSAOCG00000014097	xrn1	95	82.906	ENSCVAG00000013089	xrn1	99	87.633	Cyprinodon_variegatus
ENSAOCG00000014097	xrn1	100	72.706	ENSDARG00000091652	xrn1	98	83.544	Danio_rerio
ENSAOCG00000014097	xrn1	95	68.273	ENSDORG00000013833	Xrn1	100	60.963	Dipodomys_ordii
ENSAOCG00000014097	xrn1	95	50.518	FBgn0020261	pcm	71	41.561	Drosophila_melanogaster
ENSAOCG00000014097	xrn1	86	70.270	ENSETEG00000003978	XRN1	88	68.595	Echinops_telfairi
ENSAOCG00000014097	xrn1	95	72.152	ENSEASG00005002687	XRN1	99	78.378	Equus_asinus_asinus
ENSAOCG00000014097	xrn1	95	69.880	ENSECAG00000008301	XRN1	100	61.102	Equus_caballus
ENSAOCG00000014097	xrn1	95	69.899	ENSEEUG00000011323	XRN1	78	81.404	Erinaceus_europaeus
ENSAOCG00000014097	xrn1	100	72.523	ENSELUG00000000169	xrn1	100	72.853	Esox_lucius
ENSAOCG00000014097	xrn1	95	63.711	ENSFCAG00000027589	XRN1	99	80.440	Felis_catus
ENSAOCG00000014097	xrn1	100	69.650	ENSFALG00000007021	XRN1	95	71.051	Ficedula_albicollis
ENSAOCG00000014097	xrn1	96	70.654	ENSFDAG00000020494	XRN1	99	78.378	Fukomys_damarensis
ENSAOCG00000014097	xrn1	91	77.042	ENSFHEG00000017356	-	98	78.243	Fundulus_heteroclitus
ENSAOCG00000014097	xrn1	95	75.420	ENSGMOG00000006396	xrn1	88	75.433	Gadus_morhua
ENSAOCG00000014097	xrn1	98	71.384	ENSGALG00000002706	XRN1	95	71.306	Gallus_gallus
ENSAOCG00000014097	xrn1	100	79.681	ENSGACG00000014328	xrn1	100	79.795	Gasterosteus_aculeatus
ENSAOCG00000014097	xrn1	94	71.157	ENSGAGG00000017535	XRN1	93	70.840	Gopherus_agassizii
ENSAOCG00000014097	xrn1	95	69.076	ENSGGOG00000008047	XRN1	100	61.001	Gorilla_gorilla
ENSAOCG00000014097	xrn1	100	83.873	ENSHBUG00000005908	xrn1	98	84.823	Haplochromis_burtoni
ENSAOCG00000014097	xrn1	86	85.246	ENSHGLG00000014476	XRN1	99	78.219	Heterocephalus_glaber_female
ENSAOCG00000014097	xrn1	86	85.246	ENSHGLG00100015130	XRN1	99	78.219	Heterocephalus_glaber_male
ENSAOCG00000014097	xrn1	94	84.534	ENSHCOG00000014062	xrn1	99	84.452	Hippocampus_comes
ENSAOCG00000014097	xrn1	100	69.816	ENSIPUG00000015229	xrn1	100	69.964	Ictalurus_punctatus
ENSAOCG00000014097	xrn1	98	71.338	ENSSTOG00000013552	XRN1	99	78.060	Ictidomys_tridecemlineatus
ENSAOCG00000014097	xrn1	96	70.742	ENSJJAG00000010863	Xrn1	99	77.778	Jaculus_jaculus
ENSAOCG00000014097	xrn1	100	79.927	ENSKMAG00000021356	xrn1	100	79.927	Kryptolebias_marmoratus
ENSAOCG00000014097	xrn1	100	81.341	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSAOCG00000014097	xrn1	100	70.667	ENSLACG00000009020	XRN1	96	70.667	Latimeria_chalumnae
ENSAOCG00000014097	xrn1	100	74.460	ENSLOCG00000007944	xrn1	96	74.480	Lepisosteus_oculatus
ENSAOCG00000014097	xrn1	84	85.246	ENSLAFG00000015426	XRN1	99	73.102	Loxodonta_africana
ENSAOCG00000014097	xrn1	95	68.675	ENSMFAG00000032599	XRN1	100	61.117	Macaca_fascicularis
ENSAOCG00000014097	xrn1	95	69.478	ENSMMUG00000014038	XRN1	100	61.060	Macaca_mulatta
ENSAOCG00000014097	xrn1	95	69.277	ENSMNEG00000034217	XRN1	100	61.003	Macaca_nemestrina
ENSAOCG00000014097	xrn1	61	77.517	ENSMLEG00000041349	-	99	79.515	Mandrillus_leucophaeus
ENSAOCG00000014097	xrn1	95	90.640	ENSMAMG00000013219	xrn1	99	88.813	Mastacembelus_armatus
ENSAOCG00000014097	xrn1	100	84.070	ENSMZEG00005015099	xrn1	99	84.012	Maylandia_zebra
ENSAOCG00000014097	xrn1	97	69.628	ENSMGAG00000006333	XRN1	94	69.548	Meleagris_gallopavo
ENSAOCG00000014097	xrn1	95	69.076	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSAOCG00000014097	xrn1	95	69.277	ENSMOCG00000008665	Xrn1	99	78.537	Microtus_ochrogaster
ENSAOCG00000014097	xrn1	91	76.596	ENSMMOG00000020896	-	96	81.550	Mola_mola
ENSAOCG00000014097	xrn1	95	70.482	ENSMODG00000021236	XRN1	100	61.045	Monodelphis_domestica
ENSAOCG00000014097	xrn1	100	78.717	ENSMALG00000004098	xrn1	100	79.242	Monopterus_albus
ENSAOCG00000014097	xrn1	98	66.050	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSAOCG00000014097	xrn1	98	71.292	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSAOCG00000014097	xrn1	98	71.040	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSAOCG00000014097	xrn1	98	71.212	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSAOCG00000014097	xrn1	95	69.215	ENSMPUG00000012040	XRN1	100	61.678	Mustela_putorius_furo
ENSAOCG00000014097	xrn1	98	70.916	ENSMLUG00000016885	XRN1	94	70.916	Myotis_lucifugus
ENSAOCG00000014097	xrn1	95	62.574	ENSNGAG00000023964	Xrn1	99	74.441	Nannospalax_galili
ENSAOCG00000014097	xrn1	95	69.679	ENSNLEG00000004726	XRN1	100	60.410	Nomascus_leucogenys
ENSAOCG00000014097	xrn1	66	96.907	ENSMEUG00000014473	-	66	97.087	Notamacropus_eugenii
ENSAOCG00000014097	xrn1	87	59.211	ENSOPRG00000007337	-	72	68.841	Ochotona_princeps
ENSAOCG00000014097	xrn1	100	87.188	ENSONIG00000016673	xrn1	99	86.905	Oreochromis_niloticus
ENSAOCG00000014097	xrn1	90	68.561	ENSOANG00000006735	XRN1	93	68.384	Ornithorhynchus_anatinus
ENSAOCG00000014097	xrn1	86	85.246	ENSOCUG00000001861	XRN1	94	71.611	Oryctolagus_cuniculus
ENSAOCG00000014097	xrn1	100	80.198	ENSORLG00000013005	xrn1	98	80.198	Oryzias_latipes
ENSAOCG00000014097	xrn1	100	79.849	ENSORLG00020005559	xrn1	100	79.907	Oryzias_latipes_hni
ENSAOCG00000014097	xrn1	100	79.779	ENSORLG00015022523	xrn1	100	79.779	Oryzias_latipes_hsok
ENSAOCG00000014097	xrn1	100	81.707	ENSOMEG00000015397	xrn1	99	87.438	Oryzias_melastigma
ENSAOCG00000014097	xrn1	97	59.604	ENSOGAG00000000170	XRN1	100	59.014	Otolemur_garnettii
ENSAOCG00000014097	xrn1	98	71.178	ENSOARG00000006343	XRN1	94	71.178	Ovis_aries
ENSAOCG00000014097	xrn1	95	69.076	ENSPPAG00000010180	XRN1	100	61.038	Pan_paniscus
ENSAOCG00000014097	xrn1	95	70.140	ENSPPRG00000007125	XRN1	100	61.859	Panthera_pardus
ENSAOCG00000014097	xrn1	86	85.246	ENSPTIG00000021081	XRN1	100	61.802	Panthera_tigris_altaica
ENSAOCG00000014097	xrn1	95	69.076	ENSPTRG00000015482	XRN1	100	61.095	Pan_troglodytes
ENSAOCG00000014097	xrn1	95	69.478	ENSPANG00000010638	XRN1	100	61.003	Papio_anubis
ENSAOCG00000014097	xrn1	99	69.481	ENSPSIG00000018050	XRN1	95	69.558	Pelodiscus_sinensis
ENSAOCG00000014097	xrn1	95	75.560	ENSPMGG00000002648	xrn1	99	87.859	Periophthalmus_magnuspinnatus
ENSAOCG00000014097	xrn1	95	69.076	ENSPEMG00000020610	Xrn1	99	78.855	Peromyscus_maniculatus_bairdii
ENSAOCG00000014097	xrn1	83	69.463	ENSPMAG00000002975	xrn1	90	77.299	Petromyzon_marinus
ENSAOCG00000014097	xrn1	98	70.738	ENSPCIG00000028735	XRN1	99	78.503	Phascolarctos_cinereus
ENSAOCG00000014097	xrn1	87	95.122	ENSPFOG00000013932	xrn1	99	83.655	Poecilia_formosa
ENSAOCG00000014097	xrn1	91	83.473	ENSPLAG00000021653	xrn1	99	83.667	Poecilia_latipinna
ENSAOCG00000014097	xrn1	89	83.575	ENSPMEG00000003076	xrn1	95	83.641	Poecilia_mexicana
ENSAOCG00000014097	xrn1	100	80.185	ENSPREG00000021147	xrn1	100	80.707	Poecilia_reticulata
ENSAOCG00000014097	xrn1	95	69.679	ENSPPYG00000014172	XRN1	100	60.248	Pongo_abelii
ENSAOCG00000014097	xrn1	95	69.215	ENSPCAG00000005638	XRN1	87	79.121	Procavia_capensis
ENSAOCG00000014097	xrn1	95	68.474	ENSPCOG00000013089	XRN1	99	77.901	Propithecus_coquereli
ENSAOCG00000014097	xrn1	80	84.426	ENSPVAG00000016265	XRN1	92	70.130	Pteropus_vampyrus
ENSAOCG00000014097	xrn1	100	83.790	ENSPNYG00000010570	xrn1	99	83.732	Pundamilia_nyererei
ENSAOCG00000014097	xrn1	100	69.430	ENSPNAG00000023531	xrn1	100	70.133	Pygocentrus_nattereri
ENSAOCG00000014097	xrn1	95	68.110	ENSRNOG00000042951	Xrn1	100	60.440	Rattus_norvegicus
ENSAOCG00000014097	xrn1	95	69.478	ENSRBIG00000041227	XRN1	100	60.889	Rhinopithecus_bieti
ENSAOCG00000014097	xrn1	61	77.181	ENSRROG00000033764	-	100	96.117	Rhinopithecus_roxellana
ENSAOCG00000014097	xrn1	87	53.383	YGL173C	XRN1	73	52.989	Saccharomyces_cerevisiae
ENSAOCG00000014097	xrn1	95	69.478	ENSSBOG00000029561	XRN1	100	61.193	Saimiri_boliviensis_boliviensis
ENSAOCG00000014097	xrn1	97	70.218	ENSSHAG00000016207	XRN1	95	68.740	Sarcophilus_harrisii
ENSAOCG00000014097	xrn1	95	74.037	ENSSFOG00015024211	xrn1	100	68.911	Scleropages_formosus
ENSAOCG00000014097	xrn1	100	83.333	ENSSMAG00000016534	xrn1	100	86.600	Scophthalmus_maximus
ENSAOCG00000014097	xrn1	92	90.040	ENSSDUG00000010306	xrn1	97	92.504	Seriola_dumerili
ENSAOCG00000014097	xrn1	98	89.775	ENSSLDG00000021543	xrn1	100	89.466	Seriola_lalandi_dorsalis
ENSAOCG00000014097	xrn1	95	69.495	ENSSARG00000007741	-	75	67.665	Sorex_araneus
ENSAOCG00000014097	xrn1	89	72.786	ENSSPUG00000010779	-	95	75.789	Sphenodon_punctatus
ENSAOCG00000014097	xrn1	92	84.265	ENSSPAG00000009856	-	95	94.251	Stegastes_partitus
ENSAOCG00000014097	xrn1	100	71.280	ENSTGUG00000008498	XRN1	96	71.360	Taeniopygia_guttata
ENSAOCG00000014097	xrn1	98	77.972	ENSTRUG00000004895	xrn1	96	87.554	Takifugu_rubripes
ENSAOCG00000014097	xrn1	99	80.426	ENSTNIG00000017615	xrn1	94	80.775	Tetraodon_nigroviridis
ENSAOCG00000014097	xrn1	86	82.787	ENSTBEG00000003256	XRN1	88	71.406	Tupaia_belangeri
ENSAOCG00000014097	xrn1	86	83.607	ENSTTRG00000012914	XRN1	100	57.605	Tursiops_truncatus
ENSAOCG00000014097	xrn1	86	85.246	ENSUAMG00000001608	XRN1	99	75.199	Ursus_americanus
ENSAOCG00000014097	xrn1	86	85.246	ENSUMAG00000013625	XRN1	95	70.414	Ursus_maritimus
ENSAOCG00000014097	xrn1	95	69.014	ENSVPAG00000004690	XRN1	100	59.215	Vicugna_pacos
ENSAOCG00000014097	xrn1	86	85.246	ENSVVUG00000024461	XRN1	99	78.696	Vulpes_vulpes
ENSAOCG00000014097	xrn1	99	66.667	ENSXETG00000000619	xrn1	99	84.777	Xenopus_tropicalis
ENSAOCG00000014097	xrn1	100	77.406	ENSXCOG00000007917	xrn1	100	77.733	Xiphophorus_couchianus
ENSAOCG00000014097	xrn1	94	85.644	ENSXMAG00000018320	xrn1	98	86.771	Xiphophorus_maculatus