EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000016212 (Gene tree)
Gene ID: 111572307
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 951 bases
Position: chrNXFZ01002841.1:199980-200930
Accession: 111572307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000027357	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000019376	-	552	XM_023275909	ENSAOCP00000027357	183 (aa)	XP_023131677	-

Gene Model

Click here to download ENSAOCG00000016212's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000016212's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000016212	cirbpa	62	37.500	ENSAOCG00000023751	-	67	37.500
ENSAOCG00000016212	cirbpa	50	38.776	ENSAOCG00000014191	hnrnpd	52	38.750
ENSAOCG00000016212	cirbpa	69	38.889	ENSAOCG00000005054	elavl3	63	38.356

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000016212	cirbpa	70	83.206	ENSAPOG00000004458	cirbpa	72	81.955	Acanthochromis_polyacanthus
ENSAOCG00000016212	cirbpa	100	75.269	ENSACIG00000016116	cirbpa	100	72.727	Amphilophus_citrinellus
ENSAOCG00000016212	cirbpa	100	97.826	ENSAPEG00000011989	cirbpa	99	99.444	Amphiprion_percula
ENSAOCG00000016212	cirbpa	100	80.645	ENSATEG00000014985	cirbpa	100	70.430	Anabas_testudineus
ENSAOCG00000016212	cirbpa	100	73.118	ENSACLG00000002094	-	99	71.585	Astatotilapia_calliptera
ENSAOCG00000016212	cirbpa	100	59.361	ENSCSEG00000014344	cirbpa	100	62.051	Cynoglossus_semilaevis
ENSAOCG00000016212	cirbpa	100	78.191	ENSCVAG00000004853	cirbpa	100	69.892	Cyprinodon_variegatus
ENSAOCG00000016212	cirbpa	99	72.826	ENSFHEG00000002580	cirbpa	100	71.978	Fundulus_heteroclitus
ENSAOCG00000016212	cirbpa	99	72.917	ENSGAFG00000008654	cirbpa	100	76.471	Gambusia_affinis
ENSAOCG00000016212	cirbpa	100	60.302	ENSGACG00000015206	cirbpa	100	61.579	Gasterosteus_aculeatus
ENSAOCG00000016212	cirbpa	100	68.063	ENSHBUG00000022060	cirbpa	100	70.588	Haplochromis_burtoni
ENSAOCG00000016212	cirbpa	98	71.505	ENSKMAG00000005905	cirbpa	99	67.760	Kryptolebias_marmoratus
ENSAOCG00000016212	cirbpa	100	61.957	ENSLBEG00000000292	cirbpa	100	57.838	Labrus_bergylta
ENSAOCG00000016212	cirbpa	63	71.795	ENSLBEG00000027731	-	66	83.951	Labrus_bergylta
ENSAOCG00000016212	cirbpa	100	72.105	ENSMAMG00000010168	cirbpa	100	68.280	Mastacembelus_armatus
ENSAOCG00000016212	cirbpa	100	68.063	ENSMZEG00005025577	-	100	70.588	Maylandia_zebra
ENSAOCG00000016212	cirbpa	98	69.892	ENSMALG00000020092	cirbpa	99	70.879	Monopterus_albus
ENSAOCG00000016212	cirbpa	100	68.063	ENSNBRG00000019658	cirbpa	100	70.588	Neolamprologus_brichardi
ENSAOCG00000016212	cirbpa	100	74.731	ENSONIG00000010169	cirbpa	100	71.658	Oreochromis_niloticus
ENSAOCG00000016212	cirbpa	100	69.110	ENSORLG00000015433	cirbpa	98	72.626	Oryzias_latipes
ENSAOCG00000016212	cirbpa	100	69.110	ENSORLG00020016909	cirbpa	98	72.626	Oryzias_latipes_hni
ENSAOCG00000016212	cirbpa	100	69.110	ENSORLG00015016636	cirbpa	100	70.053	Oryzias_latipes_hsok
ENSAOCG00000016212	cirbpa	100	71.053	ENSOMEG00000021469	cirbpa	73	70.053	Oryzias_melastigma
ENSAOCG00000016212	cirbpa	99	68.108	ENSPMGG00000017342	cirbpa	95	73.514	Periophthalmus_magnuspinnatus
ENSAOCG00000016212	cirbpa	100	72.821	ENSPFOG00000015653	cirbpa	100	77.174	Poecilia_formosa
ENSAOCG00000016212	cirbpa	98	74.737	ENSPLAG00000011125	cirbpa	100	77.174	Poecilia_latipinna
ENSAOCG00000016212	cirbpa	100	73.196	ENSPMEG00000013878	cirbpa	100	77.174	Poecilia_mexicana
ENSAOCG00000016212	cirbpa	99	74.737	ENSPREG00000018042	cirbpa	98	75.806	Poecilia_reticulata
ENSAOCG00000016212	cirbpa	100	68.063	ENSPNYG00000007198	-	100	70.588	Pundamilia_nyererei
ENSAOCG00000016212	cirbpa	100	52.020	ENSSFOG00015005346	cirbpb	100	58.289	Scleropages_formosus
ENSAOCG00000016212	cirbpa	100	68.182	ENSSMAG00000002412	cirbpa	100	60.101	Scophthalmus_maximus
ENSAOCG00000016212	cirbpa	100	69.945	ENSSPAG00000023037	cirbpa	99	64.481	Stegastes_partitus
ENSAOCG00000016212	cirbpa	100	67.553	ENSTRUG00000010187	cirbpa	100	67.016	Takifugu_rubripes
ENSAOCG00000016212	cirbpa	100	66.310	ENSTNIG00000000450	cirbpa	100	64.737	Tetraodon_nigroviridis
ENSAOCG00000016212	cirbpa	99	74.737	ENSXCOG00000008262	cirbpa	92	95.890	Xiphophorus_couchianus
ENSAOCG00000016212	cirbpa	100	73.298	ENSXMAG00000019336	cirbpa	100	74.332	Xiphophorus_maculatus