EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAOCG00000016766 (Gene tree)
Gene ID: 111585440
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 35903 bases
Position: chrNXFZ01004504.1:21770-57672
Accession: 111585440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000027632	Upf2	PF04050.14	4e-33	1	1
ENSAOCP00000012220	Upf2	PF04050.14	5.6e-33	1	1
ENSAOCP00000012258	Upf2	PF04050.14	6.9e-33	1	1
ENSAOCP00000012220	MIF4G	PF02854.19	3.4e-76	1	3
ENSAOCP00000012220	MIF4G	PF02854.19	3.4e-76	2	3
ENSAOCP00000012220	MIF4G	PF02854.19	3.4e-76	3	3
ENSAOCP00000027632	MIF4G	PF02854.19	3.8e-76	1	3
ENSAOCP00000027632	MIF4G	PF02854.19	3.8e-76	2	3
ENSAOCP00000027632	MIF4G	PF02854.19	3.8e-76	3	3
ENSAOCP00000012258	MIF4G	PF02854.19	4.3e-76	1	3
ENSAOCP00000012258	MIF4G	PF02854.19	4.3e-76	2	3
ENSAOCP00000012258	MIF4G	PF02854.19	4.3e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000019937	UPF2-202	6214	XM_023294932	ENSAOCP00000027632	1276 (aa)	XP_023150700	UPI000C30A964
ENSAOCT00000030558	UPF2-203	3744	-	ENSAOCP00000012220	1247 (aa)	-	-
ENSAOCT00000019919	UPF2-201	4188	XM_023294929	ENSAOCP00000012258	1315 (aa)	XP_023150697	UPI000C306254

Gene Model

Click here to download ENSAOCG00000016766's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000016766's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000016766	UPF2	100	82.541	ENSG00000151461	UPF2	100	82.463	Homo_sapiens
ENSAOCG00000016766	UPF2	100	95.433	ENSAPOG00000015837	UPF2	100	95.433	Acanthochromis_polyacanthus
ENSAOCG00000016766	UPF2	100	83.151	ENSAMEG00000004586	UPF2	100	83.073	Ailuropoda_melanoleuca
ENSAOCG00000016766	UPF2	99	97.257	ENSACIG00000018078	UPF2	100	97.257	Amphilophus_citrinellus
ENSAOCG00000016766	UPF2	100	99.922	ENSAPEG00000019084	UPF2	100	99.922	Amphiprion_percula
ENSAOCG00000016766	UPF2	100	96.557	ENSATEG00000021677	UPF2	99	96.557	Anabas_testudineus
ENSAOCG00000016766	UPF2	100	79.763	ENSAPLG00000010287	UPF2	90	84.851	Anas_platyrhynchos
ENSAOCG00000016766	UPF2	100	82.839	ENSACAG00000009259	UPF2	100	82.839	Anolis_carolinensis
ENSAOCG00000016766	UPF2	91	79.092	ENSANAG00000028451	UPF2	93	79.078	Aotus_nancymaae
ENSAOCG00000016766	UPF2	100	96.635	ENSACLG00000012696	UPF2	100	96.635	Astatotilapia_calliptera
ENSAOCG00000016766	UPF2	99	89.367	ENSAMXG00000013700	UPF2	99	89.289	Astyanax_mexicanus
ENSAOCG00000016766	UPF2	100	83.151	ENSBTAG00000000288	UPF2	100	82.917	Bos_taurus
ENSAOCG00000016766	UPF2	100	82.137	ENSCJAG00000020685	UPF2	100	81.669	Callithrix_jacchus
ENSAOCG00000016766	UPF2	100	83.229	ENSCAFG00000004839	UPF2	100	83.151	Canis_familiaris
ENSAOCG00000016766	UPF2	100	82.203	ENSCAFG00020005882	UPF2	99	86.869	Canis_lupus_dingo
ENSAOCG00000016766	UPF2	100	83.151	ENSCHIG00000020359	UPF2	100	83.073	Capra_hircus
ENSAOCG00000016766	UPF2	100	82.761	ENSTSYG00000000935	UPF2	97	85.955	Carlito_syrichta
ENSAOCG00000016766	UPF2	91	74.850	ENSCAPG00000016658	UPF2	95	74.403	Cavia_aperea
ENSAOCG00000016766	UPF2	99	80.110	ENSCPOG00000008809	UPF2	100	80.031	Cavia_porcellus
ENSAOCG00000016766	UPF2	100	75.897	ENSCCAG00000035991	UPF2	100	75.507	Cebus_capucinus
ENSAOCG00000016766	UPF2	100	82.697	ENSCATG00000032679	UPF2	100	82.619	Cercocebus_atys
ENSAOCG00000016766	UPF2	100	82.123	ENSCLAG00000011434	UPF2	100	82.045	Chinchilla_lanigera
ENSAOCG00000016766	UPF2	100	82.697	ENSCSAG00000013372	UPF2	100	82.619	Chlorocebus_sabaeus
ENSAOCG00000016766	UPF2	79	89.579	ENSCHOG00000000422	UPF2	81	89.579	Choloepus_hoffmanni
ENSAOCG00000016766	UPF2	99	81.612	ENSCPBG00000027823	UPF2	100	81.455	Chrysemys_picta_bellii
ENSAOCG00000016766	UPF2	79	49.265	ENSCSAVG00000007772	-	99	48.814	Ciona_savignyi
ENSAOCG00000016766	UPF2	100	77.183	ENSCANG00000040396	UPF2	100	77.847	Colobus_angolensis_palliatus
ENSAOCG00000016766	UPF2	100	82.605	ENSCGRG00001019347	Upf2	100	82.605	Cricetulus_griseus_chok1gshd
ENSAOCG00000016766	UPF2	100	82.605	ENSCGRG00000017993	Upf2	100	82.605	Cricetulus_griseus_crigri
ENSAOCG00000016766	UPF2	99	88.010	ENSCSEG00000003520	UPF2	99	86.953	Cynoglossus_semilaevis
ENSAOCG00000016766	UPF2	99	94.791	ENSCVAG00000006167	UPF2	100	94.712	Cyprinodon_variegatus
ENSAOCG00000016766	UPF2	100	82.995	ENSDNOG00000018160	UPF2	100	82.917	Dasypus_novemcinctus
ENSAOCG00000016766	UPF2	100	82.449	ENSDORG00000002478	Upf2	100	82.371	Dipodomys_ordii
ENSAOCG00000016766	UPF2	89	36.296	FBgn0029992	Upf2	90	39.719	Drosophila_melanogaster
ENSAOCG00000016766	UPF2	73	92.701	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSAOCG00000016766	UPF2	66	72.185	ENSEBUG00000012448	-	97	68.460	Eptatretus_burgeri
ENSAOCG00000016766	UPF2	100	82.436	ENSEASG00005019274	UPF2	100	82.599	Equus_asinus_asinus
ENSAOCG00000016766	UPF2	100	82.436	ENSECAG00000017022	UPF2	100	82.358	Equus_caballus
ENSAOCG00000016766	UPF2	82	74.528	ENSEEUG00000007819	UPF2	74	75.281	Erinaceus_europaeus
ENSAOCG00000016766	UPF2	99	89.548	ENSELUG00000012014	UPF2	100	89.938	Esox_lucius
ENSAOCG00000016766	UPF2	100	85.792	ENSFCAG00000005785	UPF2	100	82.995	Felis_catus
ENSAOCG00000016766	UPF2	100	84.087	ENSFALG00000001889	UPF2	98	84.009	Ficedula_albicollis
ENSAOCG00000016766	UPF2	100	81.577	ENSFDAG00000014348	UPF2	100	81.421	Fukomys_damarensis
ENSAOCG00000016766	UPF2	99	94.945	ENSFHEG00000009826	UPF2	100	94.945	Fundulus_heteroclitus
ENSAOCG00000016766	UPF2	91	89.465	ENSGMOG00000005557	UPF2	100	87.900	Gadus_morhua
ENSAOCG00000016766	UPF2	100	84.178	ENSGALG00000033772	UPF2	100	83.904	Gallus_gallus
ENSAOCG00000016766	UPF2	100	94.357	ENSGAFG00000020867	UPF2	100	94.357	Gambusia_affinis
ENSAOCG00000016766	UPF2	99	93.980	ENSGACG00000001080	UPF2	100	94.292	Gasterosteus_aculeatus
ENSAOCG00000016766	UPF2	100	82.605	ENSGAGG00000002700	UPF2	100	82.449	Gopherus_agassizii
ENSAOCG00000016766	UPF2	100	82.541	ENSGGOG00000001479	UPF2	100	82.463	Gorilla_gorilla
ENSAOCG00000016766	UPF2	100	96.557	ENSHBUG00000004249	UPF2	100	96.708	Haplochromis_burtoni
ENSAOCG00000016766	UPF2	100	81.733	ENSHGLG00000015176	-	100	81.655	Heterocephalus_glaber_female
ENSAOCG00000016766	UPF2	99	72.869	ENSHGLG00000003822	-	99	72.869	Heterocephalus_glaber_female
ENSAOCG00000016766	UPF2	99	79.359	ENSHGLG00100010036	UPF2	100	77.778	Heterocephalus_glaber_male
ENSAOCG00000016766	UPF2	100	91.803	ENSHCOG00000004025	UPF2	99	91.803	Hippocampus_comes
ENSAOCG00000016766	UPF2	100	88.300	ENSIPUG00000015524	UPF2	100	86.349	Ictalurus_punctatus
ENSAOCG00000016766	UPF2	100	82.761	ENSSTOG00000013075	UPF2	100	82.683	Ictidomys_tridecemlineatus
ENSAOCG00000016766	UPF2	100	79.469	ENSJJAG00000004913	Upf2	100	81.903	Jaculus_jaculus
ENSAOCG00000016766	UPF2	99	94.401	ENSKMAG00000001071	UPF2	100	94.322	Kryptolebias_marmoratus
ENSAOCG00000016766	UPF2	100	95.383	ENSLBEG00000016394	-	99	95.462	Labrus_bergylta
ENSAOCG00000016766	UPF2	81	93.472	ENSLBEG00000000728	-	94	92.857	Labrus_bergylta
ENSAOCG00000016766	UPF2	99	77.259	ENSLACG00000015945	UPF2	100	77.457	Latimeria_chalumnae
ENSAOCG00000016766	UPF2	99	88.346	ENSLOCG00000015698	UPF2	100	88.031	Lepisosteus_oculatus
ENSAOCG00000016766	UPF2	100	82.697	ENSMFAG00000043865	UPF2	100	82.619	Macaca_fascicularis
ENSAOCG00000016766	UPF2	100	82.697	ENSMMUG00000008241	UPF2	100	82.619	Macaca_mulatta
ENSAOCG00000016766	UPF2	81	83.595	ENSMNEG00000008062	UPF2	99	83.497	Macaca_nemestrina
ENSAOCG00000016766	UPF2	100	79.843	ENSMLEG00000036120	UPF2	100	80.172	Mandrillus_leucophaeus
ENSAOCG00000016766	UPF2	100	96.635	ENSMAMG00000018276	UPF2	100	96.635	Mastacembelus_armatus
ENSAOCG00000016766	UPF2	100	96.635	ENSMZEG00005021595	UPF2	100	96.635	Maylandia_zebra
ENSAOCG00000016766	UPF2	99	83.634	ENSMGAG00000004573	UPF2	99	83.412	Meleagris_gallopavo
ENSAOCG00000016766	UPF2	100	80.577	ENSMAUG00000016512	Upf2	100	80.577	Mesocricetus_auratus
ENSAOCG00000016766	UPF2	100	82.043	ENSMICG00000001716	UPF2	99	86.364	Microcebus_murinus
ENSAOCG00000016766	UPF2	100	81.733	ENSMOCG00000008263	Upf2	100	81.811	Microtus_ochrogaster
ENSAOCG00000016766	UPF2	100	93.023	ENSMMOG00000006528	UPF2	100	92.783	Mola_mola
ENSAOCG00000016766	UPF2	100	81.045	ENSMODG00000016794	UPF2	100	83.073	Monodelphis_domestica
ENSAOCG00000016766	UPF2	99	94.349	ENSMALG00000002663	UPF2	100	94.505	Monopterus_albus
ENSAOCG00000016766	UPF2	100	82.449	MGP_CAROLIEiJ_G0023157	Upf2	99	84.709	Mus_caroli
ENSAOCG00000016766	UPF2	100	82.761	ENSMUSG00000043241	Upf2	100	82.761	Mus_musculus
ENSAOCG00000016766	UPF2	100	82.761	MGP_PahariEiJ_G0019217	Upf2	100	83.396	Mus_pahari
ENSAOCG00000016766	UPF2	100	82.917	MGP_SPRETEiJ_G0024075	Upf2	100	83.396	Mus_spretus
ENSAOCG00000016766	UPF2	100	83.073	ENSMPUG00000001064	UPF2	100	82.995	Mustela_putorius_furo
ENSAOCG00000016766	UPF2	99	82.371	ENSMLUG00000000228	UPF2	100	82.399	Myotis_lucifugus
ENSAOCG00000016766	UPF2	100	96.714	ENSNBRG00000013629	UPF2	100	96.714	Neolamprologus_brichardi
ENSAOCG00000016766	UPF2	100	82.619	ENSNLEG00000012058	UPF2	100	82.541	Nomascus_leucogenys
ENSAOCG00000016766	UPF2	72	94.366	ENSOPRG00000006801	-	73	94.366	Ochotona_princeps
ENSAOCG00000016766	UPF2	100	81.733	ENSODEG00000001290	UPF2	100	81.620	Octodon_degus
ENSAOCG00000016766	UPF2	100	96.322	ENSONIG00000017991	UPF2	100	96.322	Oreochromis_niloticus
ENSAOCG00000016766	UPF2	99	81.790	ENSOCUG00000006230	UPF2	100	80.700	Oryctolagus_cuniculus
ENSAOCG00000016766	UPF2	100	93.265	ENSORLG00000017189	UPF2	100	93.500	Oryzias_latipes
ENSAOCG00000016766	UPF2	100	93.344	ENSORLG00020005969	UPF2	100	93.579	Oryzias_latipes_hni
ENSAOCG00000016766	UPF2	100	93.344	ENSORLG00015005713	UPF2	100	93.579	Oryzias_latipes_hsok
ENSAOCG00000016766	UPF2	99	90.345	ENSOMEG00000023420	UPF2	99	89.831	Oryzias_melastigma
ENSAOCG00000016766	UPF2	100	83.151	ENSOGAG00000005796	UPF2	100	82.683	Otolemur_garnettii
ENSAOCG00000016766	UPF2	100	83.022	ENSOARG00000014587	UPF2	100	82.944	Ovis_aries
ENSAOCG00000016766	UPF2	100	79.213	ENSPPAG00000037953	UPF2	100	79.547	Pan_paniscus
ENSAOCG00000016766	UPF2	100	83.073	ENSPPRG00000000690	UPF2	100	82.995	Panthera_pardus
ENSAOCG00000016766	UPF2	100	83.073	ENSPTIG00000008867	UPF2	100	82.995	Panthera_tigris_altaica
ENSAOCG00000016766	UPF2	100	82.541	ENSPTRG00000002291	UPF2	100	82.463	Pan_troglodytes
ENSAOCG00000016766	UPF2	100	82.697	ENSPANG00000023399	UPF2	100	82.619	Papio_anubis
ENSAOCG00000016766	UPF2	100	88.368	ENSPKIG00000025502	UPF2	100	85.714	Paramormyrops_kingsleyae
ENSAOCG00000016766	UPF2	60	81.818	ENSPSIG00000015158	UPF2	95	81.686	Pelodiscus_sinensis
ENSAOCG00000016766	UPF2	99	90.816	ENSPMGG00000005259	UPF2	100	90.816	Periophthalmus_magnuspinnatus
ENSAOCG00000016766	UPF2	93	76.081	ENSPEMG00000015731	Upf2	99	76.081	Peromyscus_maniculatus_bairdii
ENSAOCG00000016766	UPF2	100	82.995	ENSPCIG00000006656	UPF2	100	82.879	Phascolarctos_cinereus
ENSAOCG00000016766	UPF2	100	94.592	ENSPFOG00000017118	UPF2	100	94.592	Poecilia_formosa
ENSAOCG00000016766	UPF2	100	94.671	ENSPLAG00000005094	UPF2	100	94.671	Poecilia_latipinna
ENSAOCG00000016766	UPF2	100	94.592	ENSPMEG00000017009	UPF2	100	94.592	Poecilia_mexicana
ENSAOCG00000016766	UPF2	99	93.485	ENSPREG00000021880	UPF2	100	93.328	Poecilia_reticulata
ENSAOCG00000016766	UPF2	66	85.172	ENSPPYG00000002089	-	100	85.172	Pongo_abelii
ENSAOCG00000016766	UPF2	100	70.671	ENSPCAG00000000684	UPF2	100	70.593	Procavia_capensis
ENSAOCG00000016766	UPF2	100	81.405	ENSPCOG00000021656	UPF2	100	81.165	Propithecus_coquereli
ENSAOCG00000016766	UPF2	100	76.306	ENSPVAG00000017286	UPF2	100	76.228	Pteropus_vampyrus
ENSAOCG00000016766	UPF2	99	94.122	ENSPNYG00000017096	UPF2	100	94.122	Pundamilia_nyererei
ENSAOCG00000016766	UPF2	100	89.470	ENSPNAG00000009357	UPF2	100	89.782	Pygocentrus_nattereri
ENSAOCG00000016766	UPF2	99	78.616	ENSRNOG00000023593	Upf2	100	94.444	Rattus_norvegicus
ENSAOCG00000016766	UPF2	99	81.406	ENSRBIG00000037780	UPF2	100	81.328	Rhinopithecus_bieti
ENSAOCG00000016766	UPF2	100	82.385	ENSRROG00000043547	UPF2	100	82.307	Rhinopithecus_roxellana
ENSAOCG00000016766	UPF2	100	82.059	ENSSBOG00000020012	UPF2	100	81.513	Saimiri_boliviensis_boliviensis
ENSAOCG00000016766	UPF2	100	87.198	ENSSFOG00015023788	upf2	100	87.198	Scleropages_formosus
ENSAOCG00000016766	UPF2	90	93.229	ENSSMAG00000007637	UPF2	100	93.002	Scophthalmus_maximus
ENSAOCG00000016766	UPF2	100	97.492	ENSSDUG00000017244	UPF2	99	97.492	Seriola_dumerili
ENSAOCG00000016766	UPF2	100	96.154	ENSSLDG00000016866	UPF2	100	96.154	Seriola_lalandi_dorsalis
ENSAOCG00000016766	UPF2	100	81.747	ENSSARG00000008615	UPF2	100	81.825	Sorex_araneus
ENSAOCG00000016766	UPF2	100	80.414	ENSSPUG00000014544	UPF2	99	80.607	Sphenodon_punctatus
ENSAOCG00000016766	UPF2	68	84.994	ENSSSCG00000011117	-	99	85.029	Sus_scrofa
ENSAOCG00000016766	UPF2	99	83.815	ENSTGUG00000002163	-	100	83.737	Taeniopygia_guttata
ENSAOCG00000016766	UPF2	100	93.349	ENSTRUG00000007519	UPF2	99	93.505	Takifugu_rubripes
ENSAOCG00000016766	UPF2	100	89.766	ENSTNIG00000004453	UPF2	100	89.453	Tetraodon_nigroviridis
ENSAOCG00000016766	UPF2	93	74.307	ENSTBEG00000012679	UPF2	93	75.063	Tupaia_belangeri
ENSAOCG00000016766	UPF2	100	81.967	ENSTTRG00000016388	UPF2	100	81.889	Tursiops_truncatus
ENSAOCG00000016766	UPF2	88	94.382	ENSUAMG00000023560	UPF2	98	94.382	Ursus_americanus
ENSAOCG00000016766	UPF2	100	83.151	ENSUMAG00000012953	UPF2	95	83.073	Ursus_maritimus
ENSAOCG00000016766	UPF2	84	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSAOCG00000016766	UPF2	100	83.229	ENSVVUG00000006166	UPF2	100	83.151	Vulpes_vulpes
ENSAOCG00000016766	UPF2	100	78.907	ENSXETG00000033103	UPF2	91	84.596	Xenopus_tropicalis
ENSAOCG00000016766	UPF2	99	94.427	ENSXCOG00000011604	UPF2	100	94.427	Xiphophorus_couchianus
ENSAOCG00000016766	UPF2	100	94.592	ENSXMAG00000017209	UPF2	100	94.592	Xiphophorus_maculatus