EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAOCG00000017188 (Gene tree)
Gene ID: 111565183
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 11234 bases
Position: chrNXFZ01006382.1:356715-367948
Accession: 111565183
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000012662	TruB_N	PF01509.18	1.1e-47	1	1
ENSAOCP00000012665	TruB_N	PF01509.18	1.5e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000020456	-	2026	XM_023265206	ENSAOCP00000012662	275 (aa)	XP_023120974	UPI000C312DB2
ENSAOCT00000030721	-	894	-	ENSAOCP00000012665	297 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000017188's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000017188's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000017188	trub1	89	68.293	ENSG00000165832	TRUB1	70	68.571	Homo_sapiens
ENSAOCG00000017188	trub1	100	98.182	ENSAPOG00000020565	trub1	100	98.182	Acanthochromis_polyacanthus
ENSAOCG00000017188	trub1	89	67.742	ENSAMEG00000014931	TRUB1	70	68.016	Ailuropoda_melanoleuca
ENSAOCG00000017188	trub1	96	84.528	ENSACIG00000003060	trub1	88	84.351	Amphilophus_citrinellus
ENSAOCG00000017188	trub1	100	99.273	ENSAPEG00000015209	trub1	100	99.273	Amphiprion_percula
ENSAOCG00000017188	trub1	89	89.796	ENSATEG00000023291	trub1	86	90.456	Anabas_testudineus
ENSAOCG00000017188	trub1	89	68.852	ENSAPLG00000006808	TRUB1	87	68.852	Anas_platyrhynchos
ENSAOCG00000017188	trub1	89	67.755	ENSACAG00000009282	TRUB1	88	68.033	Anolis_carolinensis
ENSAOCG00000017188	trub1	89	68.293	ENSANAG00000022870	TRUB1	70	68.571	Aotus_nancymaae
ENSAOCG00000017188	trub1	99	86.765	ENSACLG00000000823	trub1	94	88.550	Astatotilapia_calliptera
ENSAOCG00000017188	trub1	91	78.486	ENSAMXG00000015845	trub1	82	78.689	Astyanax_mexicanus
ENSAOCG00000017188	trub1	89	69.512	ENSBTAG00000012955	TRUB1	70	69.796	Bos_taurus
ENSAOCG00000017188	trub1	89	68.293	ENSCJAG00000047815	TRUB1	70	68.571	Callithrix_jacchus
ENSAOCG00000017188	trub1	89	68.699	ENSCAFG00000011688	TRUB1	70	68.980	Canis_familiaris
ENSAOCG00000017188	trub1	89	68.699	ENSCAFG00020013237	TRUB1	70	68.980	Canis_lupus_dingo
ENSAOCG00000017188	trub1	89	68.699	ENSCHIG00000020884	TRUB1	73	68.980	Capra_hircus
ENSAOCG00000017188	trub1	89	68.293	ENSTSYG00000000446	TRUB1	70	68.571	Carlito_syrichta
ENSAOCG00000017188	trub1	77	61.792	ENSCAPG00000017088	TRUB1	82	61.792	Cavia_aperea
ENSAOCG00000017188	trub1	67	65.574	ENSCPOG00000040236	-	75	65.934	Cavia_porcellus
ENSAOCG00000017188	trub1	68	65.054	ENSCPOG00000030129	-	72	65.405	Cavia_porcellus
ENSAOCG00000017188	trub1	89	68.293	ENSCCAG00000028842	TRUB1	70	68.571	Cebus_capucinus
ENSAOCG00000017188	trub1	89	68.293	ENSCATG00000033431	TRUB1	70	68.571	Cercocebus_atys
ENSAOCG00000017188	trub1	71	62.371	ENSCLAG00000008664	TRUB1	75	64.835	Chinchilla_lanigera
ENSAOCG00000017188	trub1	89	68.293	ENSCSAG00000004891	TRUB1	70	68.571	Chlorocebus_sabaeus
ENSAOCG00000017188	trub1	88	60.905	ENSCHOG00000011931	TRUB1	70	61.157	Choloepus_hoffmanni
ENSAOCG00000017188	trub1	89	71.429	ENSCPBG00000003051	TRUB1	84	71.721	Chrysemys_picta_bellii
ENSAOCG00000017188	trub1	89	68.293	ENSCANG00000029445	TRUB1	70	68.571	Colobus_angolensis_palliatus
ENSAOCG00000017188	trub1	91	58.661	ENSCGRG00001010322	-	66	60.000	Cricetulus_griseus_chok1gshd
ENSAOCG00000017188	trub1	82	66.667	ENSCGRG00001016772	-	71	69.302	Cricetulus_griseus_chok1gshd
ENSAOCG00000017188	trub1	87	69.038	ENSCGRG00000010806	Trub1	75	68.163	Cricetulus_griseus_crigri
ENSAOCG00000017188	trub1	95	77.778	ENSCSEG00000011261	trub1	79	80.328	Cynoglossus_semilaevis
ENSAOCG00000017188	trub1	91	83.267	ENSCVAG00000008791	trub1	75	83.673	Cyprinodon_variegatus
ENSAOCG00000017188	trub1	99	71.898	ENSDARG00000053805	trub1	99	85.294	Danio_rerio
ENSAOCG00000017188	trub1	89	66.667	ENSDNOG00000001069	TRUB1	70	66.939	Dasypus_novemcinctus
ENSAOCG00000017188	trub1	87	68.201	ENSDORG00000010431	Trub1	71	67.347	Dipodomys_ordii
ENSAOCG00000017188	trub1	65	64.964	ENSETEG00000009183	TRUB1	50	65.441	Echinops_telfairi
ENSAOCG00000017188	trub1	89	68.293	ENSEASG00005014739	TRUB1	70	68.571	Equus_asinus_asinus
ENSAOCG00000017188	trub1	89	68.293	ENSECAG00000007177	TRUB1	70	68.571	Equus_caballus
ENSAOCG00000017188	trub1	89	60.163	ENSEEUG00000013993	TRUB1	68	60.408	Erinaceus_europaeus
ENSAOCG00000017188	trub1	98	78.810	ENSELUG00000000502	trub1	85	82.787	Esox_lucius
ENSAOCG00000017188	trub1	89	68.699	ENSFCAG00000031927	TRUB1	70	68.980	Felis_catus
ENSAOCG00000017188	trub1	79	69.907	ENSFALG00000002232	TRUB1	83	69.907	Ficedula_albicollis
ENSAOCG00000017188	trub1	71	63.402	ENSFDAG00000008140	TRUB1	75	65.934	Fukomys_damarensis
ENSAOCG00000017188	trub1	99	80.952	ENSFHEG00000004016	trub1	90	83.206	Fundulus_heteroclitus
ENSAOCG00000017188	trub1	90	67.206	ENSGALG00000009091	TRUB1	86	67.623	Gallus_gallus
ENSAOCG00000017188	trub1	93	82.031	ENSGAFG00000009193	trub1	89	80.078	Gambusia_affinis
ENSAOCG00000017188	trub1	76	87.019	ENSGACG00000015387	trub1	96	89.744	Gasterosteus_aculeatus
ENSAOCG00000017188	trub1	89	71.429	ENSGAGG00000009758	TRUB1	70	71.721	Gopherus_agassizii
ENSAOCG00000017188	trub1	89	68.293	ENSGGOG00000004583	TRUB1	70	68.571	Gorilla_gorilla
ENSAOCG00000017188	trub1	99	87.500	ENSHBUG00000016787	trub1	94	89.313	Haplochromis_burtoni
ENSAOCG00000017188	trub1	93	64.591	ENSHGLG00000015314	TRUB1	70	66.531	Heterocephalus_glaber_female
ENSAOCG00000017188	trub1	71	62.887	ENSHGLG00100009183	TRUB1	77	65.385	Heterocephalus_glaber_male
ENSAOCG00000017188	trub1	98	83.643	ENSHCOG00000017877	trub1	88	87.295	Hippocampus_comes
ENSAOCG00000017188	trub1	91	77.510	ENSIPUG00000017559	trub1	86	77.959	Ictalurus_punctatus
ENSAOCG00000017188	trub1	89	67.480	ENSSTOG00000003641	TRUB1	73	67.755	Ictidomys_tridecemlineatus
ENSAOCG00000017188	trub1	94	64.751	ENSJJAG00000011800	Trub1	72	67.347	Jaculus_jaculus
ENSAOCG00000017188	trub1	99	84.559	ENSKMAG00000006232	trub1	94	86.260	Kryptolebias_marmoratus
ENSAOCG00000017188	trub1	96	87.925	ENSLBEG00000026722	trub1	92	88.168	Labrus_bergylta
ENSAOCG00000017188	trub1	94	70.270	ENSLACG00000014885	TRUB1	81	73.140	Latimeria_chalumnae
ENSAOCG00000017188	trub1	95	74.809	ENSLOCG00000012979	trub1	83	77.959	Lepisosteus_oculatus
ENSAOCG00000017188	trub1	91	67.200	ENSLAFG00000015452	TRUB1	70	68.163	Loxodonta_africana
ENSAOCG00000017188	trub1	89	68.293	ENSMFAG00000031767	TRUB1	70	68.571	Macaca_fascicularis
ENSAOCG00000017188	trub1	89	68.293	ENSMMUG00000001902	TRUB1	70	68.571	Macaca_mulatta
ENSAOCG00000017188	trub1	89	63.008	ENSMNEG00000044646	TRUB1	68	64.979	Macaca_nemestrina
ENSAOCG00000017188	trub1	89	68.293	ENSMLEG00000042655	TRUB1	70	68.571	Mandrillus_leucophaeus
ENSAOCG00000017188	trub1	99	86.765	ENSMZEG00005024095	trub1	94	88.550	Maylandia_zebra
ENSAOCG00000017188	trub1	90	67.611	ENSMGAG00000011135	TRUB1	84	68.033	Meleagris_gallopavo
ENSAOCG00000017188	trub1	87	66.946	ENSMAUG00000011101	Trub1	72	66.122	Mesocricetus_auratus
ENSAOCG00000017188	trub1	89	67.886	ENSMICG00000016324	TRUB1	70	68.163	Microcebus_murinus
ENSAOCG00000017188	trub1	87	69.328	ENSMOCG00000017759	Trub1	74	68.443	Microtus_ochrogaster
ENSAOCG00000017188	trub1	89	69.672	ENSMODG00000009676	TRUB1	67	69.672	Monodelphis_domestica
ENSAOCG00000017188	trub1	88	69.008	MGP_CAROLIEiJ_G0023100	Trub1	75	67.742	Mus_caroli
ENSAOCG00000017188	trub1	88	68.182	ENSMUSG00000025086	Trub1	75	66.667	Mus_musculus
ENSAOCG00000017188	trub1	89	67.480	MGP_PahariEiJ_G0014588	Trub1	72	67.755	Mus_pahari
ENSAOCG00000017188	trub1	88	68.182	MGP_SPRETEiJ_G0024021	Trub1	75	66.667	Mus_spretus
ENSAOCG00000017188	trub1	89	68.699	ENSMPUG00000003556	TRUB1	70	68.980	Mustela_putorius_furo
ENSAOCG00000017188	trub1	89	67.480	ENSMLUG00000017686	TRUB1	72	67.755	Myotis_lucifugus
ENSAOCG00000017188	trub1	89	67.480	ENSNGAG00000018682	Trub1	70	67.755	Nannospalax_galili
ENSAOCG00000017188	trub1	92	91.304	ENSNBRG00000023393	trub1	88	91.429	Neolamprologus_brichardi
ENSAOCG00000017188	trub1	89	68.293	ENSNLEG00000016345	TRUB1	70	68.571	Nomascus_leucogenys
ENSAOCG00000017188	trub1	73	69.652	ENSMEUG00000006603	TRUB1	74	69.652	Notamacropus_eugenii
ENSAOCG00000017188	trub1	89	67.073	ENSOPRG00000009371	TRUB1	71	67.347	Ochotona_princeps
ENSAOCG00000017188	trub1	92	65.217	ENSODEG00000010854	TRUB1	70	66.531	Octodon_degus
ENSAOCG00000017188	trub1	98	88.104	ENSONIG00000007249	trub1	95	88.931	Oreochromis_niloticus
ENSAOCG00000017188	trub1	90	68.421	ENSOANG00000001556	TRUB1	80	69.421	Ornithorhynchus_anatinus
ENSAOCG00000017188	trub1	89	67.480	ENSOCUG00000009456	TRUB1	71	67.755	Oryctolagus_cuniculus
ENSAOCG00000017188	trub1	99	82.117	ENSORLG00000029719	trub1	93	85.714	Oryzias_latipes
ENSAOCG00000017188	trub1	99	82.117	ENSORLG00020016767	trub1	92	85.714	Oryzias_latipes_hni
ENSAOCG00000017188	trub1	99	82.117	ENSORLG00015014728	trub1	93	85.714	Oryzias_latipes_hsok
ENSAOCG00000017188	trub1	94	84.556	ENSOMEG00000014556	trub1	91	84.556	Oryzias_melastigma
ENSAOCG00000017188	trub1	89	68.293	ENSOGAG00000015895	TRUB1	70	68.571	Otolemur_garnettii
ENSAOCG00000017188	trub1	89	67.194	ENSOARG00000015591	TRUB1	72	67.460	Ovis_aries
ENSAOCG00000017188	trub1	89	68.293	ENSPPAG00000043645	TRUB1	70	68.571	Pan_paniscus
ENSAOCG00000017188	trub1	89	68.699	ENSPPRG00000007096	TRUB1	70	68.980	Panthera_pardus
ENSAOCG00000017188	trub1	89	68.699	ENSPTIG00000006378	TRUB1	70	68.980	Panthera_tigris_altaica
ENSAOCG00000017188	trub1	89	68.293	ENSPTRG00000002964	TRUB1	70	68.571	Pan_troglodytes
ENSAOCG00000017188	trub1	89	68.293	ENSPANG00000020712	TRUB1	70	68.571	Papio_anubis
ENSAOCG00000017188	trub1	65	74.603	ENSPKIG00000003852	trub1	72	80.952	Paramormyrops_kingsleyae
ENSAOCG00000017188	trub1	91	70.400	ENSPSIG00000012877	TRUB1	83	71.488	Pelodiscus_sinensis
ENSAOCG00000017188	trub1	95	81.226	ENSPMGG00000000075	trub1	88	82.787	Periophthalmus_magnuspinnatus
ENSAOCG00000017188	trub1	99	63.406	ENSPEMG00000011156	Trub1	72	68.571	Peromyscus_maniculatus_bairdii
ENSAOCG00000017188	trub1	89	69.672	ENSPCIG00000009729	TRUB1	66	69.672	Phascolarctos_cinereus
ENSAOCG00000017188	trub1	95	82.308	ENSPFOG00000009950	trub1	89	85.246	Poecilia_formosa
ENSAOCG00000017188	trub1	99	80.220	ENSPLAG00000013855	trub1	86	84.836	Poecilia_latipinna
ENSAOCG00000017188	trub1	99	80.586	ENSPMEG00000009064	trub1	88	85.246	Poecilia_mexicana
ENSAOCG00000017188	trub1	99	80.220	ENSPREG00000003343	trub1	94	82.375	Poecilia_reticulata
ENSAOCG00000017188	trub1	89	67.886	ENSPPYG00000002676	TRUB1	70	68.163	Pongo_abelii
ENSAOCG00000017188	trub1	91	61.200	ENSPCAG00000008427	TRUB1	70	62.041	Procavia_capensis
ENSAOCG00000017188	trub1	89	62.602	ENSPCOG00000024360	TRUB1	68	64.135	Propithecus_coquereli
ENSAOCG00000017188	trub1	73	68.317	ENSPVAG00000007575	TRUB1	76	68.657	Pteropus_vampyrus
ENSAOCG00000017188	trub1	99	87.132	ENSPNYG00000018614	trub1	94	88.931	Pundamilia_nyererei
ENSAOCG00000017188	trub1	91	68.273	ENSPNAG00000006881	trub1	78	68.033	Pygocentrus_nattereri
ENSAOCG00000017188	trub1	89	66.667	ENSRNOG00000017321	Trub1	72	66.939	Rattus_norvegicus
ENSAOCG00000017188	trub1	89	60.569	ENSRBIG00000033423	TRUB1	68	59.514	Rhinopithecus_bieti
ENSAOCG00000017188	trub1	89	68.293	ENSRROG00000033902	TRUB1	70	68.571	Rhinopithecus_roxellana
ENSAOCG00000017188	trub1	89	68.293	ENSSBOG00000024237	TRUB1	70	68.571	Saimiri_boliviensis_boliviensis
ENSAOCG00000017188	trub1	77	70.233	ENSSHAG00000009346	TRUB1	72	70.233	Sarcophilus_harrisii
ENSAOCG00000017188	trub1	98	74.182	ENSSFOG00015022124	trub1	83	79.424	Scleropages_formosus
ENSAOCG00000017188	trub1	100	85.818	ENSSMAG00000001020	trub1	93	88.550	Scophthalmus_maximus
ENSAOCG00000017188	trub1	96	88.679	ENSSDUG00000016414	trub1	94	88.931	Seriola_dumerili
ENSAOCG00000017188	trub1	100	85.252	ENSSLDG00000015486	trub1	94	88.550	Seriola_lalandi_dorsalis
ENSAOCG00000017188	trub1	95	68.061	ENSSPUG00000001642	TRUB1	84	70.902	Sphenodon_punctatus
ENSAOCG00000017188	trub1	100	94.245	ENSSPAG00000001217	trub1	94	96.565	Stegastes_partitus
ENSAOCG00000017188	trub1	89	67.886	ENSSSCG00000010653	TRUB1	72	68.699	Sus_scrofa
ENSAOCG00000017188	trub1	89	69.388	ENSTGUG00000010971	TRUB1	87	69.388	Taeniopygia_guttata
ENSAOCG00000017188	trub1	81	58.559	ENSTBEG00000002880	TRUB1	83	59.434	Tupaia_belangeri
ENSAOCG00000017188	trub1	73	67.822	ENSTTRG00000005767	TRUB1	77	68.159	Tursiops_truncatus
ENSAOCG00000017188	trub1	89	68.699	ENSUAMG00000024876	TRUB1	70	68.980	Ursus_americanus
ENSAOCG00000017188	trub1	89	68.699	ENSUMAG00000002411	TRUB1	73	68.980	Ursus_maritimus
ENSAOCG00000017188	trub1	91	67.984	ENSVPAG00000005507	TRUB1	70	68.980	Vicugna_pacos
ENSAOCG00000017188	trub1	89	68.699	ENSVVUG00000010085	TRUB1	59	68.980	Vulpes_vulpes
ENSAOCG00000017188	trub1	93	67.704	ENSXETG00000023828	trub1	87	69.835	Xenopus_tropicalis
ENSAOCG00000017188	trub1	88	85.537	ENSXCOG00000017847	trub1	84	85.294	Xiphophorus_couchianus
ENSAOCG00000017188	trub1	99	80.586	ENSXMAG00000014701	trub1	88	85.246	Xiphophorus_maculatus