EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000017336 (Gene tree)
Gene ID: 111580982
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 38087 bases
Position: chrNXFZ01003653.1:112230-150316
Accession: 111580982
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000027933	RNA_pol_Rpb1_5	PF04998.17	9.4e-100	1	1
ENSAOCP00000027952	RNA_pol_Rpb1_5	PF04998.17	1.2e-99	1	1
ENSAOCP00000027933	RNA_pol_Rpb1_4	PF05000.17	4.7e-21	1	1
ENSAOCP00000027952	RNA_pol_Rpb1_4	PF05000.17	5.6e-21	1	1
ENSAOCP00000027933	RNA_pol_Rpb1_2	PF00623.20	1.4e-68	1	1
ENSAOCP00000027952	RNA_pol_Rpb1_2	PF00623.20	1.6e-68	1	1
ENSAOCP00000027933	RNA_pol_Rpb1_3	PF04983.18	5.2e-38	1	1
ENSAOCP00000027952	RNA_pol_Rpb1_3	PF04983.18	6.8e-38	1	1
ENSAOCP00000027952	RNA_pol_Rpb1_1	PF04997.12	1.5e-22	1	1
ENSAOCP00000027933	RNA_pol_Rpb1_1	PF04997.12	8.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000030748	-	4710	-	ENSAOCP00000027933	1569 (aa)	-	-
ENSAOCT00000030764	-	6146	XM_023288940	ENSAOCP00000027952	1690 (aa)	XP_023144708	UPI000C303D97

Gene Model

Click here to download ENSAOCG00000017336's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000017336's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000017336	polr1a	74	33.119	ENSAOCG00000004255	polr2a	60	33.119
ENSAOCG00000017336	polr1a	74	32.799	ENSAOCG00000002071	polr3a	78	32.871
ENSAOCG00000017336	polr1a	65	37.195	ENSAOCG00000003949	-	77	31.381

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000017336	polr1a	100	67.958	ENSG00000068654	POLR1A	100	65.831	Homo_sapiens
ENSAOCG00000017336	polr1a	69	97.528	ENSAPOG00000017945	polr1a	99	97.528	Acanthochromis_polyacanthus
ENSAOCG00000017336	polr1a	100	68.927	ENSAMEG00000005807	POLR1A	94	76.048	Ailuropoda_melanoleuca
ENSAOCG00000017336	polr1a	100	83.601	ENSACIG00000022147	polr1a	100	83.045	Amphilophus_citrinellus
ENSAOCG00000017336	polr1a	100	99.763	ENSAPEG00000016105	polr1a	100	99.763	Amphiprion_percula
ENSAOCG00000017336	polr1a	100	87.688	ENSATEG00000016773	polr1a	100	87.382	Anabas_testudineus
ENSAOCG00000017336	polr1a	88	68.458	ENSAPLG00000013871	POLR1A	99	67.226	Anas_platyrhynchos
ENSAOCG00000017336	polr1a	99	67.680	ENSACAG00000012141	POLR1A	99	65.046	Anolis_carolinensis
ENSAOCG00000017336	polr1a	100	67.346	ENSANAG00000033927	POLR1A	100	66.029	Aotus_nancymaae
ENSAOCG00000017336	polr1a	98	86.842	ENSACLG00000020541	polr1a	99	86.842	Astatotilapia_calliptera
ENSAOCG00000017336	polr1a	100	68.070	ENSBTAG00000006481	POLR1A	100	66.338	Bos_taurus
ENSAOCG00000017336	polr1a	97	40.957	WBGene00012999	rpoa-1	98	38.571	Caenorhabditis_elegans
ENSAOCG00000017336	polr1a	100	67.535	ENSCJAG00000019547	POLR1A	100	65.527	Callithrix_jacchus
ENSAOCG00000017336	polr1a	100	68.596	ENSCAFG00000007613	POLR1A	100	66.454	Canis_familiaris
ENSAOCG00000017336	polr1a	100	68.816	ENSCAFG00020014752	POLR1A	100	66.157	Canis_lupus_dingo
ENSAOCG00000017336	polr1a	100	68.417	ENSCHIG00000018204	POLR1A	100	65.718	Capra_hircus
ENSAOCG00000017336	polr1a	100	67.890	ENSTSYG00000002761	POLR1A	100	65.563	Carlito_syrichta
ENSAOCG00000017336	polr1a	97	64.553	ENSCAPG00000010132	POLR1A	99	63.003	Cavia_aperea
ENSAOCG00000017336	polr1a	100	67.724	ENSCPOG00000012350	POLR1A	100	66.124	Cavia_porcellus
ENSAOCG00000017336	polr1a	100	68.099	ENSCCAG00000019839	POLR1A	100	65.875	Cebus_capucinus
ENSAOCG00000017336	polr1a	100	68.732	ENSCATG00000029786	POLR1A	100	65.767	Cercocebus_atys
ENSAOCG00000017336	polr1a	100	67.229	ENSCLAG00000005187	POLR1A	100	66.126	Chinchilla_lanigera
ENSAOCG00000017336	polr1a	100	68.310	ENSCSAG00000016251	POLR1A	100	65.767	Chlorocebus_sabaeus
ENSAOCG00000017336	polr1a	99	69.333	ENSCPBG00000001115	POLR1A	99	66.667	Chrysemys_picta_bellii
ENSAOCG00000017336	polr1a	89	61.047	ENSCSAVG00000007184	-	99	47.393	Ciona_savignyi
ENSAOCG00000017336	polr1a	100	65.376	ENSCANG00000031785	POLR1A	100	63.146	Colobus_angolensis_palliatus
ENSAOCG00000017336	polr1a	100	61.800	ENSCGRG00001006651	Polr1a	100	61.654	Cricetulus_griseus_chok1gshd
ENSAOCG00000017336	polr1a	65	65.171	ENSCGRG00000010834	Polr1a	100	65.049	Cricetulus_griseus_crigri
ENSAOCG00000017336	polr1a	97	86.111	ENSCSEG00000020190	polr1a	100	78.332	Cynoglossus_semilaevis
ENSAOCG00000017336	polr1a	100	83.000	ENSCVAG00000020941	polr1a	100	82.181	Cyprinodon_variegatus
ENSAOCG00000017336	polr1a	100	74.363	ENSDARG00000098375	polr1a	100	72.355	Danio_rerio
ENSAOCG00000017336	polr1a	100	65.585	ENSDNOG00000010829	POLR1A	100	63.389	Dasypus_novemcinctus
ENSAOCG00000017336	polr1a	100	67.980	ENSDORG00000008298	Polr1a	100	64.943	Dipodomys_ordii
ENSAOCG00000017336	polr1a	72	90.625	ENSETEG00000000412	-	71	90.625	Echinops_telfairi
ENSAOCG00000017336	polr1a	88	48.504	ENSEBUG00000005667	-	99	47.666	Eptatretus_burgeri
ENSAOCG00000017336	polr1a	100	68.803	ENSEASG00005001625	POLR1A	100	66.338	Equus_asinus_asinus
ENSAOCG00000017336	polr1a	95	77.005	ENSECAG00000030510	-	96	76.551	Equus_caballus
ENSAOCG00000017336	polr1a	95	77.005	ENSECAG00000010092	POLR1A	96	76.551	Equus_caballus
ENSAOCG00000017336	polr1a	95	77.005	ENSECAG00000036306	-	96	76.551	Equus_caballus
ENSAOCG00000017336	polr1a	86	77.389	ENSEEUG00000000676	POLR1A	85	77.389	Erinaceus_europaeus
ENSAOCG00000017336	polr1a	100	77.360	ENSELUG00000012769	polr1a	99	75.336	Esox_lucius
ENSAOCG00000017336	polr1a	100	68.547	ENSFCAG00000008966	POLR1A	100	66.415	Felis_catus
ENSAOCG00000017336	polr1a	99	68.179	ENSFALG00000010082	POLR1A	99	66.001	Ficedula_albicollis
ENSAOCG00000017336	polr1a	100	68.198	ENSFDAG00000013726	POLR1A	100	66.009	Fukomys_damarensis
ENSAOCG00000017336	polr1a	100	79.811	ENSFHEG00000005996	polr1a	100	79.211	Fundulus_heteroclitus
ENSAOCG00000017336	polr1a	100	71.437	ENSGMOG00000002230	polr1a	100	71.269	Gadus_morhua
ENSAOCG00000017336	polr1a	89	64.865	ENSGALG00000038160	-	98	63.514	Gallus_gallus
ENSAOCG00000017336	polr1a	100	83.832	ENSGAFG00000015266	polr1a	100	80.479	Gambusia_affinis
ENSAOCG00000017336	polr1a	100	81.818	ENSGACG00000018791	polr1a	100	80.417	Gasterosteus_aculeatus
ENSAOCG00000017336	polr1a	88	69.844	ENSGAGG00000004984	-	96	71.883	Gopherus_agassizii
ENSAOCG00000017336	polr1a	100	68.169	ENSGGOG00000001788	POLR1A	100	65.709	Gorilla_gorilla
ENSAOCG00000017336	polr1a	90	81.311	ENSHBUG00000020021	polr1a	98	83.858	Haplochromis_burtoni
ENSAOCG00000017336	polr1a	100	68.600	ENSHGLG00000006334	POLR1A	100	66.144	Heterocephalus_glaber_female
ENSAOCG00000017336	polr1a	100	68.358	ENSHGLG00100006614	POLR1A	100	65.953	Heterocephalus_glaber_male
ENSAOCG00000017336	polr1a	100	79.432	ENSHCOG00000003345	polr1a	100	79.432	Hippocampus_comes
ENSAOCG00000017336	polr1a	100	74.823	ENSIPUG00000013174	polr1a	100	72.037	Ictalurus_punctatus
ENSAOCG00000017336	polr1a	99	67.921	ENSSTOG00000012580	POLR1A	99	65.145	Ictidomys_tridecemlineatus
ENSAOCG00000017336	polr1a	100	67.180	ENSJJAG00000013113	Polr1a	100	66.165	Jaculus_jaculus
ENSAOCG00000017336	polr1a	100	87.500	ENSKMAG00000007399	polr1a	100	86.095	Kryptolebias_marmoratus
ENSAOCG00000017336	polr1a	100	83.945	ENSLBEG00000015401	polr1a	98	87.294	Labrus_bergylta
ENSAOCG00000017336	polr1a	50	77.288	ENSLACG00000003218	polr1a	100	71.227	Latimeria_chalumnae
ENSAOCG00000017336	polr1a	100	74.982	ENSLOCG00000010881	polr1a	100	71.819	Lepisosteus_oculatus
ENSAOCG00000017336	polr1a	100	68.622	ENSLAFG00000014948	POLR1A	100	66.532	Loxodonta_africana
ENSAOCG00000017336	polr1a	100	68.239	ENSMFAG00000046097	POLR1A	100	65.767	Macaca_fascicularis
ENSAOCG00000017336	polr1a	100	68.239	ENSMMUG00000015815	POLR1A	100	65.767	Macaca_mulatta
ENSAOCG00000017336	polr1a	100	68.239	ENSMNEG00000043313	POLR1A	100	65.767	Macaca_nemestrina
ENSAOCG00000017336	polr1a	100	68.003	ENSMLEG00000042428	POLR1A	100	65.462	Mandrillus_leucophaeus
ENSAOCG00000017336	polr1a	100	87.384	ENSMAMG00000016565	polr1a	100	85.588	Mastacembelus_armatus
ENSAOCG00000017336	polr1a	100	88.029	ENSMZEG00005004915	polr1a	100	86.466	Maylandia_zebra
ENSAOCG00000017336	polr1a	99	65.466	ENSMGAG00000013111	POLR1A	99	62.579	Meleagris_gallopavo
ENSAOCG00000017336	polr1a	89	68.763	ENSMAUG00000008497	Polr1a	99	65.798	Mesocricetus_auratus
ENSAOCG00000017336	polr1a	100	67.785	ENSMICG00000000757	POLR1A	100	66.108	Microcebus_murinus
ENSAOCG00000017336	polr1a	100	67.624	ENSMOCG00000000122	Polr1a	100	66.339	Microtus_ochrogaster
ENSAOCG00000017336	polr1a	100	82.046	ENSMMOG00000010216	polr1a	100	81.129	Mola_mola
ENSAOCG00000017336	polr1a	100	64.136	ENSMODG00000009335	POLR1A	100	62.823	Monodelphis_domestica
ENSAOCG00000017336	polr1a	100	86.705	ENSMALG00000013363	polr1a	100	85.815	Monopterus_albus
ENSAOCG00000017336	polr1a	100	67.583	MGP_CAROLIEiJ_G0028494	Polr1a	100	65.449	Mus_caroli
ENSAOCG00000017336	polr1a	100	67.439	ENSMUSG00000049553	Polr1a	100	65.081	Mus_musculus
ENSAOCG00000017336	polr1a	100	67.857	MGP_PahariEiJ_G0022230	Polr1a	100	65.663	Mus_pahari
ENSAOCG00000017336	polr1a	100	66.275	MGP_SPRETEiJ_G0029499	Polr1a	100	63.952	Mus_spretus
ENSAOCG00000017336	polr1a	100	68.759	ENSMPUG00000009135	POLR1A	100	66.647	Mustela_putorius_furo
ENSAOCG00000017336	polr1a	100	67.840	ENSMLUG00000015723	POLR1A	100	66.263	Myotis_lucifugus
ENSAOCG00000017336	polr1a	100	67.558	ENSNGAG00000017907	Polr1a	100	65.817	Nannospalax_galili
ENSAOCG00000017336	polr1a	100	87.607	ENSNBRG00000000519	polr1a	100	86.466	Neolamprologus_brichardi
ENSAOCG00000017336	polr1a	100	66.246	ENSNLEG00000002264	POLR1A	100	63.922	Nomascus_leucogenys
ENSAOCG00000017336	polr1a	75	84.252	ENSMEUG00000011665	-	75	84.252	Notamacropus_eugenii
ENSAOCG00000017336	polr1a	93	72.340	ENSOPRG00000008269	POLR1A	100	61.452	Ochotona_princeps
ENSAOCG00000017336	polr1a	100	67.581	ENSODEG00000003542	POLR1A	100	66.106	Octodon_degus
ENSAOCG00000017336	polr1a	100	87.179	ENSONIG00000015895	polr1a	100	86.318	Oreochromis_niloticus
ENSAOCG00000017336	polr1a	100	67.549	ENSOCUG00000010138	POLR1A	100	66.647	Oryctolagus_cuniculus
ENSAOCG00000017336	polr1a	100	84.003	ENSORLG00000008753	polr1a	99	82.447	Oryzias_latipes
ENSAOCG00000017336	polr1a	100	79.280	ENSORLG00020020726	polr1a	99	79.162	Oryzias_latipes_hni
ENSAOCG00000017336	polr1a	95	88.298	ENSORLG00015016071	polr1a	98	88.298	Oryzias_latipes_hsok
ENSAOCG00000017336	polr1a	100	67.530	ENSOGAG00000004031	POLR1A	100	66.068	Otolemur_garnettii
ENSAOCG00000017336	polr1a	100	68.443	ENSOARG00000020601	POLR1A	100	66.262	Ovis_aries
ENSAOCG00000017336	polr1a	100	67.958	ENSPPAG00000042450	POLR1A	100	65.480	Pan_paniscus
ENSAOCG00000017336	polr1a	100	67.624	ENSPPRG00000006702	POLR1A	100	66.357	Panthera_pardus
ENSAOCG00000017336	polr1a	100	67.132	ENSPTIG00000018783	POLR1A	100	65.896	Panthera_tigris_altaica
ENSAOCG00000017336	polr1a	100	67.958	ENSPTRG00000012147	POLR1A	100	65.480	Pan_troglodytes
ENSAOCG00000017336	polr1a	100	68.521	ENSPANG00000025908	POLR1A	100	65.594	Papio_anubis
ENSAOCG00000017336	polr1a	100	74.645	ENSPKIG00000005468	polr1a	98	75.735	Paramormyrops_kingsleyae
ENSAOCG00000017336	polr1a	68	65.688	ENSPSIG00000009321	-	99	66.110	Pelodiscus_sinensis
ENSAOCG00000017336	polr1a	51	88.804	ENSPMGG00000009718	polr1a	89	88.479	Periophthalmus_magnuspinnatus
ENSAOCG00000017336	polr1a	100	67.887	ENSPEMG00000022224	Polr1a	100	66.029	Peromyscus_maniculatus_bairdii
ENSAOCG00000017336	polr1a	94	67.269	ENSPCIG00000004222	POLR1A	99	65.326	Phascolarctos_cinereus
ENSAOCG00000017336	polr1a	100	83.511	ENSPFOG00000005025	polr1a	100	83.001	Poecilia_formosa
ENSAOCG00000017336	polr1a	100	83.607	ENSPLAG00000021389	polr1a	100	83.137	Poecilia_latipinna
ENSAOCG00000017336	polr1a	100	80.211	ENSPMEG00000006463	polr1a	100	80.585	Poecilia_mexicana
ENSAOCG00000017336	polr1a	100	83.180	ENSPREG00000002389	polr1a	100	82.845	Poecilia_reticulata
ENSAOCG00000017336	polr1a	100	68.839	ENSPPYG00000012217	POLR1A	100	65.422	Pongo_abelii
ENSAOCG00000017336	polr1a	90	77.064	ENSPCAG00000011582	POLR1A	87	76.606	Procavia_capensis
ENSAOCG00000017336	polr1a	100	68.017	ENSPCOG00000026987	POLR1A	100	65.767	Propithecus_coquereli
ENSAOCG00000017336	polr1a	97	66.201	ENSPVAG00000012674	POLR1A	95	66.494	Pteropus_vampyrus
ENSAOCG00000017336	polr1a	100	87.814	ENSPNYG00000000026	polr1a	100	86.288	Pundamilia_nyererei
ENSAOCG00000017336	polr1a	100	74.079	ENSPNAG00000019223	polr1a	100	72.077	Pygocentrus_nattereri
ENSAOCG00000017336	polr1a	100	68.630	ENSRNOG00000009545	Polr1a	100	65.932	Rattus_norvegicus
ENSAOCG00000017336	polr1a	100	68.099	ENSRBIG00000028335	POLR1A	100	65.767	Rhinopithecus_bieti
ENSAOCG00000017336	polr1a	100	68.099	ENSRROG00000031473	POLR1A	100	65.767	Rhinopithecus_roxellana
ENSAOCG00000017336	polr1a	99	43.885	YOR341W	RPA190	99	35.497	Saccharomyces_cerevisiae
ENSAOCG00000017336	polr1a	100	67.676	ENSSBOG00000030262	POLR1A	100	65.643	Saimiri_boliviensis_boliviensis
ENSAOCG00000017336	polr1a	98	70.548	ENSSHAG00000014739	POLR1A	100	61.313	Sarcophilus_harrisii
ENSAOCG00000017336	polr1a	100	74.412	ENSSFOG00015019716	polr1a	100	70.722	Scleropages_formosus
ENSAOCG00000017336	polr1a	100	85.949	ENSSMAG00000014342	polr1a	100	85.664	Scophthalmus_maximus
ENSAOCG00000017336	polr1a	100	89.621	ENSSDUG00000014631	polr1a	100	88.909	Seriola_dumerili
ENSAOCG00000017336	polr1a	100	85.906	ENSSLDG00000024095	polr1a	100	85.662	Seriola_lalandi_dorsalis
ENSAOCG00000017336	polr1a	71	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSAOCG00000017336	polr1a	95	74.359	ENSSPUG00000004215	POLR1A	98	74.359	Sphenodon_punctatus
ENSAOCG00000017336	polr1a	64	91.818	ENSSPAG00000016341	polr1a	95	91.705	Stegastes_partitus
ENSAOCG00000017336	polr1a	82	70.311	ENSSSCG00000008226	POLR1A	99	67.271	Sus_scrofa
ENSAOCG00000017336	polr1a	98	67.753	ENSTGUG00000010704	POLR1A	100	65.100	Taeniopygia_guttata
ENSAOCG00000017336	polr1a	100	79.957	ENSTRUG00000002210	polr1a	99	79.646	Takifugu_rubripes
ENSAOCG00000017336	polr1a	100	73.709	ENSTNIG00000010116	polr1a	100	73.647	Tetraodon_nigroviridis
ENSAOCG00000017336	polr1a	73	84.071	ENSTBEG00000008646	POLR1A	74	84.071	Tupaia_belangeri
ENSAOCG00000017336	polr1a	100	64.842	ENSTTRG00000008597	POLR1A	100	63.937	Tursiops_truncatus
ENSAOCG00000017336	polr1a	74	67.176	ENSUAMG00000012158	-	94	67.542	Ursus_americanus
ENSAOCG00000017336	polr1a	98	71.528	ENSUMAG00000006700	POLR1A	100	66.139	Ursus_maritimus
ENSAOCG00000017336	polr1a	100	68.313	ENSVVUG00000001245	POLR1A	100	66.164	Vulpes_vulpes
ENSAOCG00000017336	polr1a	100	65.202	ENSXETG00000001952	polr1a	99	64.221	Xenopus_tropicalis
ENSAOCG00000017336	polr1a	100	83.795	ENSXMAG00000004032	polr1a	100	82.845	Xiphophorus_maculatus