EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000017648 (Gene tree)
Gene ID: 111582199
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 134307 bases
Position: chrNXFZ01003828.1:125903-260209
Accession: 111582199
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000028185	RRM_1	PF00076.22	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000021060	-	5841	XM_023290779	ENSAOCP00000028185	1891 (aa)	XP_023146547	UPI000C3093B4

Gene Model

Click here to download ENSAOCG00000017648's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000017648's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000017648	tnrc6c2	91	76.744	ENSAOCG00000023968	tnrc6c1	99	80.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000017648	tnrc6c2	82	90.287	ENSATEG00000003656	tnrc6c2	99	90.177	Anabas_testudineus
ENSAOCG00000017648	tnrc6c2	99	88.383	ENSACLG00000006469	tnrc6c2	99	88.437	Astatotilapia_calliptera
ENSAOCG00000017648	tnrc6c2	87	59.253	ENSAMXG00000009579	tnrc6c2	100	57.783	Astyanax_mexicanus
ENSAOCG00000017648	tnrc6c2	91	58.470	ENSDARG00000103851	tnrc6c2	100	56.973	Danio_rerio
ENSAOCG00000017648	tnrc6c2	83	56.532	ENSELUG00000008149	-	99	79.883	Esox_lucius
ENSAOCG00000017648	tnrc6c2	87	62.165	ENSELUG00000007206	tnrc6c2	97	74.871	Esox_lucius
ENSAOCG00000017648	tnrc6c2	91	83.218	ENSFHEG00000003901	tnrc6c2	100	83.384	Fundulus_heteroclitus
ENSAOCG00000017648	tnrc6c2	99	87.854	ENSHBUG00000018310	tnrc6c2	99	88.390	Haplochromis_burtoni
ENSAOCG00000017648	tnrc6c2	99	78.696	ENSHCOG00000017802	tnrc6c2	99	78.190	Hippocampus_comes
ENSAOCG00000017648	tnrc6c2	87	54.762	ENSIPUG00000022767	tnrc6c2	100	52.550	Ictalurus_punctatus
ENSAOCG00000017648	tnrc6c2	87	88.564	ENSMAMG00000001718	tnrc6c2	100	88.747	Mastacembelus_armatus
ENSAOCG00000017648	tnrc6c2	99	88.437	ENSMZEG00005023905	tnrc6c2	99	88.490	Maylandia_zebra
ENSAOCG00000017648	tnrc6c2	87	88.882	ENSMALG00000020932	tnrc6c2	100	88.459	Monopterus_albus
ENSAOCG00000017648	tnrc6c2	85	84.826	ENSONIG00000018123	tnrc6c2	100	85.190	Oreochromis_niloticus
ENSAOCG00000017648	tnrc6c2	100	82.384	ENSORLG00000003327	tnrc6c2	99	82.519	Oryzias_latipes
ENSAOCG00000017648	tnrc6c2	100	82.551	ENSORLG00020010730	tnrc6c2	99	82.528	Oryzias_latipes_hni
ENSAOCG00000017648	tnrc6c2	100	81.919	ENSORLG00015009232	tnrc6c2	99	81.944	Oryzias_latipes_hsok
ENSAOCG00000017648	tnrc6c2	100	82.710	ENSOMEG00000017952	tnrc6c2	99	83.112	Oryzias_melastigma
ENSAOCG00000017648	tnrc6c2	91	77.648	ENSPFOG00000011590	tnrc6c2	99	77.648	Poecilia_formosa
ENSAOCG00000017648	tnrc6c2	99	82.440	ENSPMEG00000012946	tnrc6c2	98	84.274	Poecilia_mexicana
ENSAOCG00000017648	tnrc6c2	87	78.954	ENSPREG00000015823	tnrc6c2	61	86.492	Poecilia_reticulata
ENSAOCG00000017648	tnrc6c2	87	88.821	ENSPNYG00000002582	tnrc6c2	100	89.064	Pundamilia_nyererei
ENSAOCG00000017648	tnrc6c2	87	57.617	ENSPNAG00000026838	tnrc6c2	100	58.452	Pygocentrus_nattereri
ENSAOCG00000017648	tnrc6c2	87	86.586	ENSSMAG00000015145	tnrc6c2	100	86.344	Scophthalmus_maximus
ENSAOCG00000017648	tnrc6c2	87	91.180	ENSSDUG00000020741	tnrc6c2	100	91.180	Seriola_dumerili
ENSAOCG00000017648	tnrc6c2	87	90.937	ENSSLDG00000002077	tnrc6c2	100	90.937	Seriola_lalandi_dorsalis
ENSAOCG00000017648	tnrc6c2	99	95.317	ENSSPAG00000013052	tnrc6c2	99	95.530	Stegastes_partitus
ENSAOCG00000017648	tnrc6c2	84	84.683	ENSTNIG00000004178	tnrc6c2	95	84.573	Tetraodon_nigroviridis
ENSAOCG00000017648	tnrc6c2	87	84.727	ENSXMAG00000006739	tnrc6c2	100	85.030	Xiphophorus_maculatus