EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000017865 (Gene tree)
Gene ID: 111574067
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specificity factor subunit 6
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 7136 bases
Position: chrNXFZ01002954.1:5218-12353
Accession: 111574067
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000028317	RRM_1	PF00076.22	3.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000030982	-	1650	XM_023278465	ENSAOCP00000028317	549 (aa)	XP_023134233	UPI000C30211B

Gene Model

Click here to download ENSAOCG00000017865's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000017865's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000017865	cpsf6	58	39.623	ENSAOCG00000012357	CPSF7	58	52.500
ENSAOCG00000017865	cpsf6	100	100.000	ENSAOCG00000024134	-	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000017865	cpsf6	96	47.090	ENSG00000149532	CPSF7	100	50.000	Homo_sapiens
ENSAOCG00000017865	cpsf6	94	82.792	ENSG00000111605	CPSF6	88	80.851	Homo_sapiens
ENSAOCG00000017865	cpsf6	100	92.670	ENSACIG00000018413	cpsf6	100	92.670	Amphilophus_citrinellus
ENSAOCG00000017865	cpsf6	58	38.994	ENSAPEG00000015375	CPSF7	58	52.500	Amphiprion_percula
ENSAOCG00000017865	cpsf6	95	81.154	ENSAMXG00000016745	CPSF6	75	92.727	Astyanax_mexicanus
ENSAOCG00000017865	cpsf6	96	47.090	ENSCJAG00000019282	CPSF7	80	57.895	Callithrix_jacchus
ENSAOCG00000017865	cpsf6	91	82.341	ENSCAFG00000000424	CPSF6	72	81.529	Canis_familiaris
ENSAOCG00000017865	cpsf6	91	82.306	ENSTSYG00000008591	CPSF6	77	86.275	Carlito_syrichta
ENSAOCG00000017865	cpsf6	96	47.090	ENSCATG00000042801	CPSF7	73	56.395	Cercocebus_atys
ENSAOCG00000017865	cpsf6	96	47.090	ENSCSAG00000006414	CPSF7	73	56.395	Chlorocebus_sabaeus
ENSAOCG00000017865	cpsf6	95	41.852	ENSCGRG00000017954	Cpsf7	73	57.558	Cricetulus_griseus_crigri
ENSAOCG00000017865	cpsf6	100	96.545	ENSCSEG00000008967	cpsf6	100	96.545	Cynoglossus_semilaevis
ENSAOCG00000017865	cpsf6	52	40.206	ENSCSEG00000001956	CPSF7	75	40.206	Cynoglossus_semilaevis
ENSAOCG00000017865	cpsf6	79	38.498	ENSCVAG00000007392	CPSF7	81	39.487	Cyprinodon_variegatus
ENSAOCG00000017865	cpsf6	94	91.137	ENSCVAG00000014857	cpsf6	94	91.137	Cyprinodon_variegatus
ENSAOCG00000017865	cpsf6	74	59.843	ENSDNOG00000018517	CPSF7	80	58.553	Dasypus_novemcinctus
ENSAOCG00000017865	cpsf6	69	82.028	ENSETEG00000002097	CPSF6	63	82.843	Echinops_telfairi
ENSAOCG00000017865	cpsf6	65	50.521	ENSETEG00000003765	CPSF7	67	48.603	Echinops_telfairi
ENSAOCG00000017865	cpsf6	50	60.833	ENSEEUG00000005966	-	66	61.739	Erinaceus_europaeus
ENSAOCG00000017865	cpsf6	65	53.125	ENSFCAG00000013677	CPSF7	82	58.553	Felis_catus
ENSAOCG00000017865	cpsf6	71	46.739	ENSFALG00000011927	CPSF7	76	54.651	Ficedula_albicollis
ENSAOCG00000017865	cpsf6	90	53.646	ENSFDAG00000003919	CPSF7	71	56.977	Fukomys_damarensis
ENSAOCG00000017865	cpsf6	59	98.675	ENSGMOG00000012951	cpsf6	59	98.675	Gadus_morhua
ENSAOCG00000017865	cpsf6	95	33.813	ENSGALG00000040962	CPSF7	63	56.977	Gallus_gallus
ENSAOCG00000017865	cpsf6	100	96.364	ENSHBUG00000005998	cpsf6	100	96.364	Haplochromis_burtoni
ENSAOCG00000017865	cpsf6	96	47.619	ENSHGLG00000019090	-	73	56.977	Heterocephalus_glaber_female
ENSAOCG00000017865	cpsf6	95	38.745	ENSHGLG00100013933	-	73	56.977	Heterocephalus_glaber_male
ENSAOCG00000017865	cpsf6	96	47.619	ENSJJAG00000019390	Cpsf7	73	57.225	Jaculus_jaculus
ENSAOCG00000017865	cpsf6	94	94.595	ENSKMAG00000014794	cpsf6	94	94.788	Kryptolebias_marmoratus
ENSAOCG00000017865	cpsf6	100	89.731	ENSLBEG00000015762	cpsf6	100	89.731	Labrus_bergylta
ENSAOCG00000017865	cpsf6	56	41.259	ENSLBEG00000000947	CPSF7	72	39.306	Labrus_bergylta
ENSAOCG00000017865	cpsf6	93	32.381	ENSLACG00000005542	CPSF7	70	44.304	Latimeria_chalumnae
ENSAOCG00000017865	cpsf6	66	90.419	ENSLOCG00000016190	cpsf6	63	91.566	Lepisosteus_oculatus
ENSAOCG00000017865	cpsf6	96	47.090	ENSMMUG00000015280	CPSF7	73	56.395	Macaca_mulatta
ENSAOCG00000017865	cpsf6	96	47.090	ENSMNEG00000029585	CPSF7	73	56.395	Macaca_nemestrina
ENSAOCG00000017865	cpsf6	100	97.091	ENSMAMG00000010385	cpsf6	100	97.091	Mastacembelus_armatus
ENSAOCG00000017865	cpsf6	100	96.364	ENSMZEG00005007975	cpsf6	100	96.364	Maylandia_zebra
ENSAOCG00000017865	cpsf6	95	43.659	ENSMGAG00000004876	CPSF7	62	59.036	Meleagris_gallopavo
ENSAOCG00000017865	cpsf6	65	51.531	ENSMODG00000020364	CPSF7	72	56.818	Monodelphis_domestica
ENSAOCG00000017865	cpsf6	82	99.552	ENSMALG00000014908	cpsf6	89	99.552	Monopterus_albus
ENSAOCG00000017865	cpsf6	96	47.090	ENSMLUG00000013278	CPSF7	73	56.977	Myotis_lucifugus
ENSAOCG00000017865	cpsf6	68	89.130	ENSMLUG00000028728	-	90	79.412	Myotis_lucifugus
ENSAOCG00000017865	cpsf6	100	96.727	ENSNBRG00000004089	cpsf6	100	96.727	Neolamprologus_brichardi
ENSAOCG00000017865	cpsf6	65	54.167	ENSMEUG00000002261	CPSF7	71	55.682	Notamacropus_eugenii
ENSAOCG00000017865	cpsf6	94	94.423	ENSONIG00000011702	cpsf6	94	94.231	Oreochromis_niloticus
ENSAOCG00000017865	cpsf6	95	42.910	ENSOCUG00000024726	CPSF7	71	56.395	Oryctolagus_cuniculus
ENSAOCG00000017865	cpsf6	79	35.117	ENSORLG00000006495	CPSF7	72	40.341	Oryzias_latipes
ENSAOCG00000017865	cpsf6	79	35.117	ENSORLG00020012657	CPSF7	72	40.341	Oryzias_latipes_hni
ENSAOCG00000017865	cpsf6	79	35.117	ENSORLG00015011091	CPSF7	71	38.202	Oryzias_latipes_hsok
ENSAOCG00000017865	cpsf6	68	36.797	ENSOMEG00000000539	CPSF7	72	40.805	Oryzias_melastigma
ENSAOCG00000017865	cpsf6	96	47.090	ENSOARG00000012937	CPSF7	64	56.395	Ovis_aries
ENSAOCG00000017865	cpsf6	65	53.125	ENSPPRG00000008538	CPSF7	71	56.977	Panthera_pardus
ENSAOCG00000017865	cpsf6	85	81.953	ENSPTIG00000004079	CPSF6	51	87.008	Panthera_tigris_altaica
ENSAOCG00000017865	cpsf6	94	82.792	ENSPANG00000011641	CPSF6	69	83.333	Papio_anubis
ENSAOCG00000017865	cpsf6	64	46.893	ENSPKIG00000018054	CPSF7	65	46.250	Paramormyrops_kingsleyae
ENSAOCG00000017865	cpsf6	95	41.713	ENSPEMG00000012648	Cpsf7	73	56.977	Peromyscus_maniculatus_bairdii
ENSAOCG00000017865	cpsf6	50	42.466	ENSPMAG00000008077	-	68	49.198	Petromyzon_marinus
ENSAOCG00000017865	cpsf6	65	51.531	ENSPCIG00000002551	CPSF7	84	53.631	Phascolarctos_cinereus
ENSAOCG00000017865	cpsf6	94	93.449	ENSPLAG00000005715	cpsf6	94	93.449	Poecilia_latipinna
ENSAOCG00000017865	cpsf6	94	93.449	ENSPMEG00000001353	cpsf6	94	93.449	Poecilia_mexicana
ENSAOCG00000017865	cpsf6	94	90.944	ENSPREG00000004417	cpsf6	94	90.944	Poecilia_reticulata
ENSAOCG00000017865	cpsf6	59	46.452	ENSPNAG00000015073	CPSF7	74	44.253	Pygocentrus_nattereri
ENSAOCG00000017865	cpsf6	95	41.713	ENSRNOG00000020668	Cpsf7	73	56.977	Rattus_norvegicus
ENSAOCG00000017865	cpsf6	96	47.090	ENSRBIG00000031429	CPSF7	82	57.895	Rhinopithecus_bieti
ENSAOCG00000017865	cpsf6	85	81.953	ENSSBOG00000010652	CPSF6	51	87.008	Saimiri_boliviensis_boliviensis
ENSAOCG00000017865	cpsf6	62	54.167	ENSSHAG00000011964	CPSF7	68	55.682	Sarcophilus_harrisii
ENSAOCG00000017865	cpsf6	62	43.017	ENSSFOG00015010288	cpsf7	69	44.444	Scleropages_formosus
ENSAOCG00000017865	cpsf6	100	90.785	ENSSMAG00000000471	cpsf6	100	90.785	Scophthalmus_maximus
ENSAOCG00000017865	cpsf6	100	98.364	ENSSDUG00000005024	cpsf6	100	98.364	Seriola_dumerili
ENSAOCG00000017865	cpsf6	100	98.364	ENSSLDG00000009042	cpsf6	100	98.364	Seriola_lalandi_dorsalis
ENSAOCG00000017865	cpsf6	85	85.039	ENSSARG00000006743	CPSF6	78	86.561	Sorex_araneus
ENSAOCG00000017865	cpsf6	65	53.333	ENSSPUG00000019344	CPSF7	73	58.140	Sphenodon_punctatus
ENSAOCG00000017865	cpsf6	100	99.636	ENSSPAG00000013906	cpsf6	100	99.636	Stegastes_partitus
ENSAOCG00000017865	cpsf6	74	59.843	ENSSSCG00000013083	CPSF7	80	58.553	Sus_scrofa
ENSAOCG00000017865	cpsf6	62	49.718	ENSTGUG00000006513	CPSF7	74	54.595	Taeniopygia_guttata
ENSAOCG00000017865	cpsf6	94	93.243	ENSTNIG00000007576	cpsf6	94	93.243	Tetraodon_nigroviridis
ENSAOCG00000017865	cpsf6	62	52.604	ENSTTRG00000011085	CPSF7	70	56.977	Tursiops_truncatus
ENSAOCG00000017865	cpsf6	85	81.953	ENSUAMG00000023492	CPSF6	51	87.008	Ursus_americanus
ENSAOCG00000017865	cpsf6	96	47.619	ENSUMAG00000011825	CPSF7	73	56.977	Ursus_maritimus
ENSAOCG00000017865	cpsf6	85	81.953	ENSUMAG00000020779	CPSF6	51	87.008	Ursus_maritimus
ENSAOCG00000017865	cpsf6	74	59.843	ENSVVUG00000004939	CPSF7	80	58.553	Vulpes_vulpes
ENSAOCG00000017865	cpsf6	97	41.882	ENSXETG00000006715	cpsf7	54	47.458	Xenopus_tropicalis
ENSAOCG00000017865	cpsf6	94	93.064	ENSXCOG00000013423	cpsf6	94	93.064	Xiphophorus_couchianus