EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAOCG00000017869 (Gene tree)
Gene ID: 111566899
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 19926 bases
Position: chrNXFZ01002031.1:493955-513880
Accession: 111566899
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000013337	TUDOR	PF00567.24	3.2e-05	1	1
ENSAOCP00000028328	TUDOR	PF00567.24	3.2e-05	1	1
ENSAOCP00000013337	SMN	PF06003.12	3.6e-15	1	1
ENSAOCP00000028328	SMN	PF06003.12	3.6e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000030989	-	4159	XM_023267708	ENSAOCP00000028328	238 (aa)	XP_023123476	UPI000C3040EB
ENSAOCT00000021359	-	4147	XM_023267709	ENSAOCP00000013337	238 (aa)	XP_023123477	UPI000C3040EB

Gene Model

Click here to download ENSAOCG00000017869's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000017869's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000017869	smndc1	100	75.210	ENSG00000119953	SMNDC1	100	75.210	Homo_sapiens
ENSAOCG00000017869	smndc1	100	98.739	ENSAPOG00000021772	smndc1	100	98.739	Acanthochromis_polyacanthus
ENSAOCG00000017869	smndc1	100	74.790	ENSAMEG00000005251	SMNDC1	100	74.790	Ailuropoda_melanoleuca
ENSAOCG00000017869	smndc1	100	92.437	ENSACIG00000004819	smndc1	100	92.437	Amphilophus_citrinellus
ENSAOCG00000017869	smndc1	100	100.000	ENSAPEG00000007752	smndc1	100	100.000	Amphiprion_percula
ENSAOCG00000017869	smndc1	100	91.597	ENSATEG00000006830	smndc1	100	91.597	Anabas_testudineus
ENSAOCG00000017869	smndc1	83	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSAOCG00000017869	smndc1	100	76.050	ENSACAG00000005983	SMNDC1	100	76.050	Anolis_carolinensis
ENSAOCG00000017869	smndc1	100	74.790	ENSANAG00000032875	SMNDC1	100	74.790	Aotus_nancymaae
ENSAOCG00000017869	smndc1	100	90.336	ENSACLG00000016360	smndc1	100	90.336	Astatotilapia_calliptera
ENSAOCG00000017869	smndc1	100	81.513	ENSAMXG00000020310	smndc1	100	81.513	Astyanax_mexicanus
ENSAOCG00000017869	smndc1	100	74.790	ENSBTAG00000000551	SMNDC1	100	74.790	Bos_taurus
ENSAOCG00000017869	smndc1	100	74.790	ENSCJAG00000018624	SMNDC1	100	74.790	Callithrix_jacchus
ENSAOCG00000017869	smndc1	100	74.790	ENSCAFG00000010720	SMNDC1	100	74.790	Canis_familiaris
ENSAOCG00000017869	smndc1	100	74.790	ENSCAFG00020011913	SMNDC1	100	74.790	Canis_lupus_dingo
ENSAOCG00000017869	smndc1	100	74.790	ENSCHIG00000010604	SMNDC1	100	74.790	Capra_hircus
ENSAOCG00000017869	smndc1	100	74.790	ENSTSYG00000026454	SMNDC1	100	74.790	Carlito_syrichta
ENSAOCG00000017869	smndc1	100	61.250	ENSCAPG00000009132	SMNDC1	100	72.772	Cavia_aperea
ENSAOCG00000017869	smndc1	100	76.151	ENSCPOG00000031666	SMNDC1	100	76.151	Cavia_porcellus
ENSAOCG00000017869	smndc1	100	74.790	ENSCCAG00000021793	SMNDC1	100	74.790	Cebus_capucinus
ENSAOCG00000017869	smndc1	100	74.370	ENSCATG00000035910	SMNDC1	100	74.370	Cercocebus_atys
ENSAOCG00000017869	smndc1	100	74.790	ENSCLAG00000002838	SMNDC1	100	76.151	Chinchilla_lanigera
ENSAOCG00000017869	smndc1	100	74.790	ENSCSAG00000005169	SMNDC1	100	74.790	Chlorocebus_sabaeus
ENSAOCG00000017869	smndc1	81	69.948	ENSCHOG00000002936	SMNDC1	100	69.948	Choloepus_hoffmanni
ENSAOCG00000017869	smndc1	100	75.210	ENSCPBG00000012837	SMNDC1	100	75.210	Chrysemys_picta_bellii
ENSAOCG00000017869	smndc1	100	68.487	ENSCANG00000034620	-	100	68.487	Colobus_angolensis_palliatus
ENSAOCG00000017869	smndc1	100	57.983	ENSCANG00000036994	-	100	57.983	Colobus_angolensis_palliatus
ENSAOCG00000017869	smndc1	100	74.790	ENSCANG00000031720	-	100	74.790	Colobus_angolensis_palliatus
ENSAOCG00000017869	smndc1	100	74.370	ENSCGRG00001012973	Smndc1	100	74.370	Cricetulus_griseus_chok1gshd
ENSAOCG00000017869	smndc1	100	74.370	ENSCGRG00000012396	Smndc1	100	74.370	Cricetulus_griseus_crigri
ENSAOCG00000017869	smndc1	100	87.815	ENSCSEG00000015621	smndc1	100	87.815	Cynoglossus_semilaevis
ENSAOCG00000017869	smndc1	100	90.336	ENSCVAG00000020432	smndc1	100	90.336	Cyprinodon_variegatus
ENSAOCG00000017869	smndc1	100	82.845	ENSDARG00000056235	smndc1	100	82.845	Danio_rerio
ENSAOCG00000017869	smndc1	100	74.790	ENSDNOG00000016387	SMNDC1	83	74.790	Dasypus_novemcinctus
ENSAOCG00000017869	smndc1	100	74.790	ENSDORG00000023715	Smndc1	100	74.790	Dipodomys_ordii
ENSAOCG00000017869	smndc1	95	40.562	FBgn0039977	CG17454	98	42.169	Drosophila_melanogaster
ENSAOCG00000017869	smndc1	100	67.220	ENSEBUG00000010929	smndc1	100	68.465	Eptatretus_burgeri
ENSAOCG00000017869	smndc1	100	74.790	ENSEASG00005014930	SMNDC1	100	74.790	Equus_asinus_asinus
ENSAOCG00000017869	smndc1	100	74.790	ENSECAG00000029973	SMNDC1	100	74.790	Equus_caballus
ENSAOCG00000017869	smndc1	83	54.040	ENSEEUG00000013407	-	100	54.040	Erinaceus_europaeus
ENSAOCG00000017869	smndc1	100	82.773	ENSELUG00000000227	smndc1	100	82.773	Esox_lucius
ENSAOCG00000017869	smndc1	100	74.790	ENSFCAG00000027353	SMNDC1	100	74.790	Felis_catus
ENSAOCG00000017869	smndc1	100	76.471	ENSFALG00000002306	SMNDC1	100	76.471	Ficedula_albicollis
ENSAOCG00000017869	smndc1	100	76.569	ENSFDAG00000006468	SMNDC1	100	76.569	Fukomys_damarensis
ENSAOCG00000017869	smndc1	100	91.176	ENSFHEG00000020150	smndc1	100	91.176	Fundulus_heteroclitus
ENSAOCG00000017869	smndc1	100	85.714	ENSGMOG00000016585	smndc1	100	85.714	Gadus_morhua
ENSAOCG00000017869	smndc1	100	76.471	ENSGALG00000008561	SMNDC1	100	76.471	Gallus_gallus
ENSAOCG00000017869	smndc1	100	90.336	ENSGAFG00000011582	smndc1	100	90.336	Gambusia_affinis
ENSAOCG00000017869	smndc1	100	90.336	ENSGACG00000009468	smndc1	100	90.336	Gasterosteus_aculeatus
ENSAOCG00000017869	smndc1	100	75.210	ENSGAGG00000024547	SMNDC1	100	75.210	Gopherus_agassizii
ENSAOCG00000017869	smndc1	100	74.790	ENSGGOG00000010071	SMNDC1	100	74.790	Gorilla_gorilla
ENSAOCG00000017869	smndc1	100	90.336	ENSHBUG00000017596	smndc1	100	90.336	Haplochromis_burtoni
ENSAOCG00000017869	smndc1	100	76.569	ENSHGLG00000013390	-	100	76.569	Heterocephalus_glaber_female
ENSAOCG00000017869	smndc1	100	55.510	ENSHGLG00000001157	-	100	55.510	Heterocephalus_glaber_female
ENSAOCG00000017869	smndc1	100	60.816	ENSHGLG00100004278	-	100	59.839	Heterocephalus_glaber_male
ENSAOCG00000017869	smndc1	100	76.569	ENSHGLG00100004814	-	100	76.569	Heterocephalus_glaber_male
ENSAOCG00000017869	smndc1	100	84.100	ENSHCOG00000000783	smndc1	100	84.100	Hippocampus_comes
ENSAOCG00000017869	smndc1	100	84.034	ENSIPUG00000004217	smndc1	100	84.034	Ictalurus_punctatus
ENSAOCG00000017869	smndc1	100	74.790	ENSSTOG00000006088	SMNDC1	100	74.790	Ictidomys_tridecemlineatus
ENSAOCG00000017869	smndc1	100	76.151	ENSJJAG00000019974	Smndc1	100	76.151	Jaculus_jaculus
ENSAOCG00000017869	smndc1	100	89.076	ENSKMAG00000020134	smndc1	100	89.076	Kryptolebias_marmoratus
ENSAOCG00000017869	smndc1	100	90.336	ENSLBEG00000004598	smndc1	100	90.336	Labrus_bergylta
ENSAOCG00000017869	smndc1	100	75.630	ENSLACG00000007784	SMNDC1	100	75.630	Latimeria_chalumnae
ENSAOCG00000017869	smndc1	100	81.933	ENSLOCG00000012355	smndc1	100	81.933	Lepisosteus_oculatus
ENSAOCG00000017869	smndc1	100	74.370	ENSLAFG00000014353	SMNDC1	100	74.370	Loxodonta_africana
ENSAOCG00000017869	smndc1	100	62.605	ENSMFAG00000038381	-	100	62.605	Macaca_fascicularis
ENSAOCG00000017869	smndc1	100	74.790	ENSMFAG00000002433	-	100	74.790	Macaca_fascicularis
ENSAOCG00000017869	smndc1	100	62.605	ENSMMUG00000045875	-	100	62.605	Macaca_mulatta
ENSAOCG00000017869	smndc1	100	74.790	ENSMMUG00000007775	SMNDC1	100	74.790	Macaca_mulatta
ENSAOCG00000017869	smndc1	100	65.546	ENSMNEG00000033853	-	100	65.546	Macaca_nemestrina
ENSAOCG00000017869	smndc1	100	74.790	ENSMNEG00000042963	-	100	74.790	Macaca_nemestrina
ENSAOCG00000017869	smndc1	100	70.293	ENSMLEG00000040236	SMNDC1	100	69.874	Mandrillus_leucophaeus
ENSAOCG00000017869	smndc1	89	90.141	ENSMAMG00000018233	smndc1	87	90.141	Mastacembelus_armatus
ENSAOCG00000017869	smndc1	100	90.336	ENSMZEG00005027510	smndc1	100	90.336	Maylandia_zebra
ENSAOCG00000017869	smndc1	91	72.685	ENSMGAG00000010777	SMNDC1	91	72.685	Meleagris_gallopavo
ENSAOCG00000017869	smndc1	100	74.790	ENSMAUG00000012243	-	100	74.790	Mesocricetus_auratus
ENSAOCG00000017869	smndc1	99	62.025	ENSMAUG00000005459	-	93	62.025	Mesocricetus_auratus
ENSAOCG00000017869	smndc1	100	64.286	ENSMICG00000031640	-	100	64.286	Microcebus_murinus
ENSAOCG00000017869	smndc1	100	75.732	ENSMICG00000027336	-	100	75.732	Microcebus_murinus
ENSAOCG00000017869	smndc1	100	74.370	ENSMOCG00000002458	Smndc1	100	74.370	Microtus_ochrogaster
ENSAOCG00000017869	smndc1	100	89.916	ENSMMOG00000008856	smndc1	100	89.916	Mola_mola
ENSAOCG00000017869	smndc1	100	75.210	ENSMODG00000010542	SMNDC1	100	75.210	Monodelphis_domestica
ENSAOCG00000017869	smndc1	100	88.235	ENSMALG00000017598	smndc1	100	88.235	Monopterus_albus
ENSAOCG00000017869	smndc1	100	76.569	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.569	Mus_caroli
ENSAOCG00000017869	smndc1	100	75.210	ENSMUSG00000025024	Smndc1	100	75.210	Mus_musculus
ENSAOCG00000017869	smndc1	100	75.210	MGP_PahariEiJ_G0014560	Smndc1	100	75.210	Mus_pahari
ENSAOCG00000017869	smndc1	100	75.210	MGP_SPRETEiJ_G0023993	Smndc1	100	75.210	Mus_spretus
ENSAOCG00000017869	smndc1	100	74.790	ENSMPUG00000002089	SMNDC1	100	74.790	Mustela_putorius_furo
ENSAOCG00000017869	smndc1	100	74.790	ENSMLUG00000016007	SMNDC1	100	74.790	Myotis_lucifugus
ENSAOCG00000017869	smndc1	100	76.569	ENSNGAG00000006833	Smndc1	100	76.569	Nannospalax_galili
ENSAOCG00000017869	smndc1	100	90.336	ENSNBRG00000017089	smndc1	100	90.336	Neolamprologus_brichardi
ENSAOCG00000017869	smndc1	100	74.790	ENSNLEG00000015471	SMNDC1	100	74.790	Nomascus_leucogenys
ENSAOCG00000017869	smndc1	76	55.495	ENSMEUG00000010120	-	98	54.726	Notamacropus_eugenii
ENSAOCG00000017869	smndc1	100	76.151	ENSOPRG00000015348	SMNDC1	100	76.151	Ochotona_princeps
ENSAOCG00000017869	smndc1	100	53.782	ENSODEG00000007594	-	100	51.681	Octodon_degus
ENSAOCG00000017869	smndc1	100	90.336	ENSONIG00000000434	smndc1	100	90.336	Oreochromis_niloticus
ENSAOCG00000017869	smndc1	100	75.630	ENSOANG00000001598	SMNDC1	100	75.630	Ornithorhynchus_anatinus
ENSAOCG00000017869	smndc1	100	54.202	ENSOCUG00000012274	-	100	56.723	Oryctolagus_cuniculus
ENSAOCG00000017869	smndc1	100	76.151	ENSOCUG00000008145	-	100	76.151	Oryctolagus_cuniculus
ENSAOCG00000017869	smndc1	100	83.613	ENSORLG00000005934	smndc1	95	83.613	Oryzias_latipes
ENSAOCG00000017869	smndc1	100	83.613	ENSORLG00020008796	smndc1	95	83.613	Oryzias_latipes_hni
ENSAOCG00000017869	smndc1	100	83.193	ENSORLG00015013666	smndc1	100	83.193	Oryzias_latipes_hsok
ENSAOCG00000017869	smndc1	100	81.513	ENSOMEG00000007590	smndc1	100	81.513	Oryzias_melastigma
ENSAOCG00000017869	smndc1	100	74.790	ENSOGAG00000000571	SMNDC1	100	74.790	Otolemur_garnettii
ENSAOCG00000017869	smndc1	100	74.790	ENSOARG00000009500	SMNDC1	100	74.790	Ovis_aries
ENSAOCG00000017869	smndc1	100	74.790	ENSPPAG00000027815	SMNDC1	100	74.790	Pan_paniscus
ENSAOCG00000017869	smndc1	100	74.790	ENSPPRG00000013749	SMNDC1	100	74.790	Panthera_pardus
ENSAOCG00000017869	smndc1	100	74.790	ENSPTIG00000011451	SMNDC1	100	74.790	Panthera_tigris_altaica
ENSAOCG00000017869	smndc1	100	74.790	ENSPTRG00000002937	SMNDC1	100	74.790	Pan_troglodytes
ENSAOCG00000017869	smndc1	100	74.790	ENSPANG00000020805	-	100	74.790	Papio_anubis
ENSAOCG00000017869	smndc1	100	70.168	ENSPANG00000031346	-	100	70.168	Papio_anubis
ENSAOCG00000017869	smndc1	100	80.252	ENSPKIG00000017164	smndc1	100	80.252	Paramormyrops_kingsleyae
ENSAOCG00000017869	smndc1	100	75.630	ENSPSIG00000012257	SMNDC1	100	75.630	Pelodiscus_sinensis
ENSAOCG00000017869	smndc1	100	81.933	ENSPMGG00000015651	smndc1	100	81.933	Periophthalmus_magnuspinnatus
ENSAOCG00000017869	smndc1	100	74.790	ENSPEMG00000022058	Smndc1	100	74.790	Peromyscus_maniculatus_bairdii
ENSAOCG00000017869	smndc1	100	63.786	ENSPMAG00000007705	smndc1	100	63.786	Petromyzon_marinus
ENSAOCG00000017869	smndc1	100	75.210	ENSPCIG00000018419	SMNDC1	100	75.210	Phascolarctos_cinereus
ENSAOCG00000017869	smndc1	95	57.965	ENSPCIG00000009693	-	98	57.965	Phascolarctos_cinereus
ENSAOCG00000017869	smndc1	100	91.176	ENSPFOG00000017113	smndc1	100	91.176	Poecilia_formosa
ENSAOCG00000017869	smndc1	100	90.336	ENSPLAG00000010372	smndc1	100	90.336	Poecilia_latipinna
ENSAOCG00000017869	smndc1	100	91.176	ENSPMEG00000012288	smndc1	100	91.176	Poecilia_mexicana
ENSAOCG00000017869	smndc1	100	89.076	ENSPREG00000012279	smndc1	100	89.076	Poecilia_reticulata
ENSAOCG00000017869	smndc1	100	74.790	ENSPPYG00000002643	SMNDC1	100	74.790	Pongo_abelii
ENSAOCG00000017869	smndc1	81	70.466	ENSPCAG00000016183	SMNDC1	100	70.466	Procavia_capensis
ENSAOCG00000017869	smndc1	100	74.370	ENSPCOG00000024343	SMNDC1	100	74.370	Propithecus_coquereli
ENSAOCG00000017869	smndc1	100	61.088	ENSPVAG00000004368	SMNDC1	100	61.088	Pteropus_vampyrus
ENSAOCG00000017869	smndc1	83	89.394	ENSPNYG00000024093	smndc1	86	89.394	Pundamilia_nyererei
ENSAOCG00000017869	smndc1	100	79.412	ENSPNAG00000025285	smndc1	100	79.412	Pygocentrus_nattereri
ENSAOCG00000017869	smndc1	100	76.569	ENSRNOG00000014833	Smndc1	100	76.569	Rattus_norvegicus
ENSAOCG00000017869	smndc1	100	60.504	ENSRBIG00000032452	-	100	60.504	Rhinopithecus_bieti
ENSAOCG00000017869	smndc1	100	74.370	ENSRBIG00000000224	-	100	74.370	Rhinopithecus_bieti
ENSAOCG00000017869	smndc1	100	74.790	ENSRROG00000044992	-	100	74.790	Rhinopithecus_roxellana
ENSAOCG00000017869	smndc1	100	60.924	ENSRROG00000039125	-	100	60.924	Rhinopithecus_roxellana
ENSAOCG00000017869	smndc1	100	74.790	ENSSBOG00000026789	SMNDC1	100	74.790	Saimiri_boliviensis_boliviensis
ENSAOCG00000017869	smndc1	100	75.210	ENSSHAG00000015189	SMNDC1	100	75.210	Sarcophilus_harrisii
ENSAOCG00000017869	smndc1	100	79.412	ENSSFOG00015008311	smndc1	100	79.412	Scleropages_formosus
ENSAOCG00000017869	smndc1	100	88.655	ENSSMAG00000020118	smndc1	100	88.655	Scophthalmus_maximus
ENSAOCG00000017869	smndc1	100	92.437	ENSSDUG00000015330	smndc1	100	92.437	Seriola_dumerili
ENSAOCG00000017869	smndc1	100	92.437	ENSSLDG00000017325	smndc1	100	92.437	Seriola_lalandi_dorsalis
ENSAOCG00000017869	smndc1	100	76.569	ENSSARG00000006063	SMNDC1	100	76.569	Sorex_araneus
ENSAOCG00000017869	smndc1	100	76.050	ENSSPUG00000004574	SMNDC1	100	76.050	Sphenodon_punctatus
ENSAOCG00000017869	smndc1	100	93.697	ENSSPAG00000000338	smndc1	100	93.697	Stegastes_partitus
ENSAOCG00000017869	smndc1	100	74.790	ENSSSCG00000030507	SMNDC1	100	74.790	Sus_scrofa
ENSAOCG00000017869	smndc1	100	76.471	ENSTGUG00000010599	SMNDC1	100	76.471	Taeniopygia_guttata
ENSAOCG00000017869	smndc1	100	86.134	ENSTRUG00000023281	smndc1	100	86.134	Takifugu_rubripes
ENSAOCG00000017869	smndc1	100	86.555	ENSTNIG00000013331	smndc1	100	86.555	Tetraodon_nigroviridis
ENSAOCG00000017869	smndc1	100	76.151	ENSTBEG00000014337	SMNDC1	100	76.151	Tupaia_belangeri
ENSAOCG00000017869	smndc1	100	74.790	ENSUAMG00000008142	SMNDC1	100	74.790	Ursus_americanus
ENSAOCG00000017869	smndc1	100	74.790	ENSUMAG00000023722	SMNDC1	100	74.790	Ursus_maritimus
ENSAOCG00000017869	smndc1	83	74.242	ENSVPAG00000003402	SMNDC1	100	74.242	Vicugna_pacos
ENSAOCG00000017869	smndc1	100	74.790	ENSVVUG00000007820	SMNDC1	100	74.790	Vulpes_vulpes
ENSAOCG00000017869	smndc1	60	60.563	ENSXETG00000015415	SMNDC1	100	60.563	Xenopus_tropicalis
ENSAOCG00000017869	smndc1	100	88.655	ENSXCOG00000009159	smndc1	100	88.655	Xiphophorus_couchianus
ENSAOCG00000017869	smndc1	100	89.496	ENSXMAG00000012755	smndc1	100	89.496	Xiphophorus_maculatus