EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000017997 (Gene tree)
Gene ID: 111582194
Gene Symbol: -
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm1
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 11042 bases
Position: chrNXFZ01003827.1:11462-22503
Accession: 111582194
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000013439	LSM	PF01423.22	4.3e-14	1	1
ENSAOCP00000013445	LSM	PF01423.22	4.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000021497	-	402	XM_023290767	ENSAOCP00000013445	133 (aa)	XP_023146535	UPI000B8FCCA0
ENSAOCT00000021493	-	1460	-	ENSAOCP00000013439	127 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000017997's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000017997's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000017997	-	100	100.000	ENSAOCG00000017096	lsm1	100	100.000
ENSAOCG00000017997	-	51	34.783	ENSAOCG00000013926	lsm8	72	34.783

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000017997	-	100	85.714	ENSG00000175324	LSM1	100	85.714	Homo_sapiens
ENSAOCG00000017997	-	100	100.000	ENSAPOG00000010833	lsm1	100	100.000	Acanthochromis_polyacanthus
ENSAOCG00000017997	-	100	85.714	ENSAMEG00000011141	LSM1	100	85.714	Ailuropoda_melanoleuca
ENSAOCG00000017997	-	72	89.362	ENSACIG00000019593	lsm1	78	89.362	Amphilophus_citrinellus
ENSAOCG00000017997	-	100	100.000	ENSAPEG00000011669	lsm1	100	100.000	Amphiprion_percula
ENSAOCG00000017997	-	100	98.496	ENSATEG00000022266	lsm1	100	98.496	Anabas_testudineus
ENSAOCG00000017997	-	100	85.714	ENSANAG00000027785	LSM1	100	85.714	Aotus_nancymaae
ENSAOCG00000017997	-	100	97.744	ENSACLG00000011400	lsm1	100	97.744	Astatotilapia_calliptera
ENSAOCG00000017997	-	100	81.955	ENSAMXG00000005441	lsm1	100	81.955	Astyanax_mexicanus
ENSAOCG00000017997	-	100	84.962	ENSBTAG00000001612	LSM1	100	84.962	Bos_taurus
ENSAOCG00000017997	-	70	55.914	WBGene00003076	lsm-1	73	55.914	Caenorhabditis_elegans
ENSAOCG00000017997	-	100	84.962	ENSCJAG00000048015	LSM1	100	84.962	Callithrix_jacchus
ENSAOCG00000017997	-	100	85.714	ENSCAFG00000006113	LSM1	100	85.714	Canis_familiaris
ENSAOCG00000017997	-	100	85.714	ENSCAFG00020001822	LSM1	100	85.714	Canis_lupus_dingo
ENSAOCG00000017997	-	100	85.714	ENSCHIG00000013194	LSM1	100	85.714	Capra_hircus
ENSAOCG00000017997	-	100	85.714	ENSTSYG00000010394	LSM1	100	85.714	Carlito_syrichta
ENSAOCG00000017997	-	100	85.714	ENSCPOG00000032671	LSM1	100	85.714	Cavia_porcellus
ENSAOCG00000017997	-	100	85.714	ENSCCAG00000037171	LSM1	100	85.714	Cebus_capucinus
ENSAOCG00000017997	-	100	85.714	ENSCATG00000020377	LSM1	100	85.714	Cercocebus_atys
ENSAOCG00000017997	-	100	84.211	ENSCLAG00000001137	LSM1	100	84.211	Chinchilla_lanigera
ENSAOCG00000017997	-	100	85.714	ENSCSAG00000015485	LSM1	100	85.714	Chlorocebus_sabaeus
ENSAOCG00000017997	-	100	84.962	ENSCHOG00000006030	LSM1	100	84.962	Choloepus_hoffmanni
ENSAOCG00000017997	-	95	79.528	ENSCPBG00000006569	LSM1	86	79.528	Chrysemys_picta_bellii
ENSAOCG00000017997	-	99	63.636	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSAOCG00000017997	-	100	85.714	ENSCANG00000019173	LSM1	100	85.714	Colobus_angolensis_palliatus
ENSAOCG00000017997	-	100	84.962	ENSCGRG00001024560	-	100	84.962	Cricetulus_griseus_chok1gshd
ENSAOCG00000017997	-	80	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSAOCG00000017997	-	100	84.962	ENSCGRG00000006554	-	100	84.962	Cricetulus_griseus_crigri
ENSAOCG00000017997	-	80	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSAOCG00000017997	-	100	97.744	ENSCSEG00000010570	lsm1	92	97.744	Cynoglossus_semilaevis
ENSAOCG00000017997	-	100	95.489	ENSCSEG00000008319	lsm1	92	95.489	Cynoglossus_semilaevis
ENSAOCG00000017997	-	100	96.992	ENSCVAG00000003871	lsm1	100	96.992	Cyprinodon_variegatus
ENSAOCG00000017997	-	100	81.203	ENSDARG00000043177	lsm1	100	81.203	Danio_rerio
ENSAOCG00000017997	-	89	67.227	ENSDNOG00000046620	-	100	67.227	Dasypus_novemcinctus
ENSAOCG00000017997	-	100	85.714	ENSDNOG00000046387	-	100	85.714	Dasypus_novemcinctus
ENSAOCG00000017997	-	99	81.061	ENSDNOG00000030989	-	99	81.061	Dasypus_novemcinctus
ENSAOCG00000017997	-	100	84.962	ENSDNOG00000032911	-	100	84.962	Dasypus_novemcinctus
ENSAOCG00000017997	-	100	85.714	ENSDORG00000028172	Lsm1	100	85.714	Dipodomys_ordii
ENSAOCG00000017997	-	93	59.677	FBgn0261067	LSm1	91	59.677	Drosophila_melanogaster
ENSAOCG00000017997	-	100	84.211	ENSEASG00005016677	LSM1	100	84.211	Equus_asinus_asinus
ENSAOCG00000017997	-	100	84.211	ENSECAG00000010461	LSM1	100	84.211	Equus_caballus
ENSAOCG00000017997	-	72	78.723	ENSEEUG00000015181	LSM1	97	77.083	Erinaceus_europaeus
ENSAOCG00000017997	-	100	78.947	ENSELUG00000023374	lsm1	100	78.947	Esox_lucius
ENSAOCG00000017997	-	100	93.233	ENSELUG00000002322	lsm1	100	93.233	Esox_lucius
ENSAOCG00000017997	-	100	85.714	ENSFCAG00000039335	LSM1	100	85.714	Felis_catus
ENSAOCG00000017997	-	89	83.051	ENSFALG00000006723	LSM1	100	83.051	Ficedula_albicollis
ENSAOCG00000017997	-	100	85.714	ENSFDAG00000007658	LSM1	100	85.714	Fukomys_damarensis
ENSAOCG00000017997	-	100	96.992	ENSFHEG00000009556	lsm1	100	96.992	Fundulus_heteroclitus
ENSAOCG00000017997	-	100	95.489	ENSGMOG00000016651	lsm1	98	95.489	Gadus_morhua
ENSAOCG00000017997	-	100	82.707	ENSGALG00000003245	LSM1	100	82.707	Gallus_gallus
ENSAOCG00000017997	-	100	96.992	ENSGAFG00000011355	lsm1	100	96.992	Gambusia_affinis
ENSAOCG00000017997	-	100	96.241	ENSGACG00000011763	lsm1	98	96.241	Gasterosteus_aculeatus
ENSAOCG00000017997	-	100	85.714	ENSGAGG00000024065	LSM1	100	85.714	Gopherus_agassizii
ENSAOCG00000017997	-	100	85.714	ENSGGOG00000022658	LSM1	100	85.714	Gorilla_gorilla
ENSAOCG00000017997	-	100	97.744	ENSHBUG00000010897	lsm1	100	97.744	Haplochromis_burtoni
ENSAOCG00000017997	-	100	69.925	ENSHGLG00000017574	-	100	69.925	Heterocephalus_glaber_female
ENSAOCG00000017997	-	100	85.714	ENSHGLG00000005711	LSM1	100	85.714	Heterocephalus_glaber_female
ENSAOCG00000017997	-	100	85.714	ENSHGLG00100017660	LSM1	100	85.714	Heterocephalus_glaber_male
ENSAOCG00000017997	-	100	69.925	ENSHGLG00100012152	-	100	69.925	Heterocephalus_glaber_male
ENSAOCG00000017997	-	100	97.744	ENSHCOG00000017233	lsm1	100	97.744	Hippocampus_comes
ENSAOCG00000017997	-	100	80.451	ENSIPUG00000002312	LSM1	100	80.451	Ictalurus_punctatus
ENSAOCG00000017997	-	62	92.405	ENSSTOG00000026870	LSM1	96	92.405	Ictidomys_tridecemlineatus
ENSAOCG00000017997	-	100	84.962	ENSJJAG00000014605	-	100	84.962	Jaculus_jaculus
ENSAOCG00000017997	-	100	98.496	ENSKMAG00000003016	lsm1	100	98.496	Kryptolebias_marmoratus
ENSAOCG00000017997	-	100	97.744	ENSLBEG00000022352	lsm1	100	97.744	Labrus_bergylta
ENSAOCG00000017997	-	90	81.667	ENSLACG00000010947	LSM1	99	81.667	Latimeria_chalumnae
ENSAOCG00000017997	-	100	86.466	ENSLOCG00000015149	lsm1	100	86.466	Lepisosteus_oculatus
ENSAOCG00000017997	-	100	85.714	ENSLAFG00000003534	LSM1	100	85.714	Loxodonta_africana
ENSAOCG00000017997	-	100	85.714	ENSMFAG00000032661	LSM1	100	85.714	Macaca_fascicularis
ENSAOCG00000017997	-	100	85.714	ENSMLEG00000034535	LSM1	100	85.714	Mandrillus_leucophaeus
ENSAOCG00000017997	-	100	97.744	ENSMAMG00000007464	lsm1	100	97.744	Mastacembelus_armatus
ENSAOCG00000017997	-	100	97.744	ENSMZEG00005010321	lsm1	100	97.744	Maylandia_zebra
ENSAOCG00000017997	-	100	82.707	ENSMGAG00000002125	LSM1	100	82.707	Meleagris_gallopavo
ENSAOCG00000017997	-	100	85.714	ENSMICG00000030726	LSM1	100	85.714	Microcebus_murinus
ENSAOCG00000017997	-	100	84.962	ENSMOCG00000022817	Lsm1	100	84.962	Microtus_ochrogaster
ENSAOCG00000017997	-	100	98.496	ENSMMOG00000015466	lsm1	100	98.496	Mola_mola
ENSAOCG00000017997	-	100	86.466	ENSMODG00000010732	-	100	86.466	Monodelphis_domestica
ENSAOCG00000017997	-	73	92.473	ENSMALG00000001478	lsm1	99	92.473	Monopterus_albus
ENSAOCG00000017997	-	100	85.714	MGP_CAROLIEiJ_G0030930	Lsm1	100	85.714	Mus_caroli
ENSAOCG00000017997	-	100	85.714	ENSMUSG00000037296	Lsm1	100	85.714	Mus_musculus
ENSAOCG00000017997	-	100	85.714	MGP_PahariEiJ_G0021400	Lsm1	100	85.714	Mus_pahari
ENSAOCG00000017997	-	100	85.714	MGP_SPRETEiJ_G0032049	Lsm1	100	85.714	Mus_spretus
ENSAOCG00000017997	-	100	86.466	ENSMPUG00000009883	LSM1	100	86.466	Mustela_putorius_furo
ENSAOCG00000017997	-	100	85.714	ENSMLUG00000003734	LSM1	100	85.714	Myotis_lucifugus
ENSAOCG00000017997	-	100	84.962	ENSNGAG00000003753	Lsm1	100	84.962	Nannospalax_galili
ENSAOCG00000017997	-	62	100.000	ENSNBRG00000017370	lsm1	68	100.000	Neolamprologus_brichardi
ENSAOCG00000017997	-	100	85.714	ENSNLEG00000029390	LSM1	100	85.714	Nomascus_leucogenys
ENSAOCG00000017997	-	100	86.466	ENSMEUG00000014077	LSM1	100	86.466	Notamacropus_eugenii
ENSAOCG00000017997	-	88	79.487	ENSOPRG00000000333	LSM1	100	79.487	Ochotona_princeps
ENSAOCG00000017997	-	100	85.714	ENSODEG00000004834	LSM1	100	85.714	Octodon_degus
ENSAOCG00000017997	-	100	97.744	ENSONIG00000010782	lsm1	100	97.744	Oreochromis_niloticus
ENSAOCG00000017997	-	100	86.466	ENSOANG00000003256	LSM1	100	86.466	Ornithorhynchus_anatinus
ENSAOCG00000017997	-	100	85.714	ENSOCUG00000015399	LSM1	100	85.714	Oryctolagus_cuniculus
ENSAOCG00000017997	-	100	96.992	ENSORLG00000030288	lsm1	100	96.992	Oryzias_latipes
ENSAOCG00000017997	-	100	95.489	ENSORLG00020006213	-	86	95.489	Oryzias_latipes_hni
ENSAOCG00000017997	-	100	96.992	ENSORLG00020003941	lsm1	100	96.992	Oryzias_latipes_hni
ENSAOCG00000017997	-	100	96.992	ENSORLG00015018350	lsm1	100	96.992	Oryzias_latipes_hsok
ENSAOCG00000017997	-	100	96.992	ENSOMEG00000012454	lsm1	100	96.992	Oryzias_melastigma
ENSAOCG00000017997	-	100	85.714	ENSOGAG00000015161	LSM1	100	85.714	Otolemur_garnettii
ENSAOCG00000017997	-	100	85.714	ENSOARG00000001317	LSM1	100	85.714	Ovis_aries
ENSAOCG00000017997	-	100	85.714	ENSPPAG00000032279	LSM1	100	85.714	Pan_paniscus
ENSAOCG00000017997	-	100	85.714	ENSPPRG00000014172	-	100	85.714	Panthera_pardus
ENSAOCG00000017997	-	100	85.714	ENSPTIG00000010289	LSM1	100	85.714	Panthera_tigris_altaica
ENSAOCG00000017997	-	100	85.714	ENSPTRG00000020169	LSM1	100	85.714	Pan_troglodytes
ENSAOCG00000017997	-	100	85.714	ENSPANG00000008814	LSM1	100	85.714	Papio_anubis
ENSAOCG00000017997	-	100	78.195	ENSPKIG00000019409	LSM1	99	78.195	Paramormyrops_kingsleyae
ENSAOCG00000017997	-	100	87.218	ENSPKIG00000001839	lsm1	100	87.218	Paramormyrops_kingsleyae
ENSAOCG00000017997	-	98	80.000	ENSPSIG00000012563	LSM1	99	80.000	Pelodiscus_sinensis
ENSAOCG00000017997	-	58	100.000	ENSPMGG00000022999	lsm1	92	84.536	Periophthalmus_magnuspinnatus
ENSAOCG00000017997	-	85	71.681	ENSPMAG00000002671	lsm1	100	71.681	Petromyzon_marinus
ENSAOCG00000017997	-	100	84.962	ENSPCIG00000008880	LSM1	100	84.962	Phascolarctos_cinereus
ENSAOCG00000017997	-	100	96.992	ENSPFOG00000016029	lsm1	100	96.992	Poecilia_formosa
ENSAOCG00000017997	-	100	96.992	ENSPLAG00000007879	lsm1	100	96.992	Poecilia_latipinna
ENSAOCG00000017997	-	100	96.992	ENSPMEG00000023550	lsm1	100	96.992	Poecilia_mexicana
ENSAOCG00000017997	-	100	96.992	ENSPREG00000009574	lsm1	100	96.992	Poecilia_reticulata
ENSAOCG00000017997	-	100	85.714	ENSPPYG00000018521	LSM1	100	85.714	Pongo_abelii
ENSAOCG00000017997	-	100	85.714	ENSPCOG00000020901	-	100	85.714	Propithecus_coquereli
ENSAOCG00000017997	-	100	85.714	ENSPVAG00000006016	LSM1	100	85.714	Pteropus_vampyrus
ENSAOCG00000017997	-	100	97.744	ENSPNYG00000018067	lsm1	100	97.744	Pundamilia_nyererei
ENSAOCG00000017997	-	100	81.203	ENSPNAG00000013707	lsm1	100	81.203	Pygocentrus_nattereri
ENSAOCG00000017997	-	100	83.459	ENSRNOG00000015375	Lsm1	100	83.459	Rattus_norvegicus
ENSAOCG00000017997	-	100	85.714	ENSRBIG00000027449	LSM1	100	85.714	Rhinopithecus_bieti
ENSAOCG00000017997	-	100	85.714	ENSRROG00000036074	LSM1	100	85.714	Rhinopithecus_roxellana
ENSAOCG00000017997	-	80	43.363	YJL124C	LSM1	66	43.363	Saccharomyces_cerevisiae
ENSAOCG00000017997	-	100	86.466	ENSSHAG00000017260	LSM1	100	86.466	Sarcophilus_harrisii
ENSAOCG00000017997	-	100	86.466	ENSSFOG00015019528	lsm1	100	86.466	Scleropages_formosus
ENSAOCG00000017997	-	100	98.496	ENSSMAG00000004930	lsm1	100	98.496	Scophthalmus_maximus
ENSAOCG00000017997	-	100	96.992	ENSSDUG00000021823	lsm1	100	96.992	Seriola_dumerili
ENSAOCG00000017997	-	100	96.992	ENSSLDG00000012154	lsm1	100	96.992	Seriola_lalandi_dorsalis
ENSAOCG00000017997	-	100	85.714	ENSSPUG00000014878	LSM1	100	85.714	Sphenodon_punctatus
ENSAOCG00000017997	-	100	99.248	ENSSPAG00000020548	lsm1	100	99.248	Stegastes_partitus
ENSAOCG00000017997	-	100	84.211	ENSSSCG00000039058	LSM1	100	84.211	Sus_scrofa
ENSAOCG00000017997	-	100	84.962	ENSTGUG00000004793	LSM1	100	84.962	Taeniopygia_guttata
ENSAOCG00000017997	-	100	93.985	ENSTRUG00000025239	lsm1	100	93.985	Takifugu_rubripes
ENSAOCG00000017997	-	100	90.977	ENSTNIG00000004055	lsm1	100	90.977	Tetraodon_nigroviridis
ENSAOCG00000017997	-	88	83.761	ENSTBEG00000015884	LSM1	100	83.761	Tupaia_belangeri
ENSAOCG00000017997	-	100	85.714	ENSTTRG00000004482	LSM1	100	85.714	Tursiops_truncatus
ENSAOCG00000017997	-	100	85.714	ENSUAMG00000004103	LSM1	100	85.714	Ursus_americanus
ENSAOCG00000017997	-	100	85.714	ENSUMAG00000009132	LSM1	100	85.714	Ursus_maritimus
ENSAOCG00000017997	-	61	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSAOCG00000017997	-	61	66.234	ENSVVUG00000014880	-	86	65.432	Vulpes_vulpes
ENSAOCG00000017997	-	100	85.714	ENSVVUG00000020191	LSM1	100	85.714	Vulpes_vulpes
ENSAOCG00000017997	-	100	81.022	ENSXETG00000009004	lsm1	100	81.022	Xenopus_tropicalis
ENSAOCG00000017997	-	100	95.489	ENSXCOG00000015631	lsm1	100	95.489	Xiphophorus_couchianus
ENSAOCG00000017997	-	100	95.489	ENSXMAG00000026637	lsm1	100	95.489	Xiphophorus_maculatus