EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAOCG00000019483 (Gene tree)
Gene ID: 111577923
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 22411 bases
Position: chrNXFZ01003274.1:400618-423028
Accession: 111577923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000014722	EST1	PF10374.9	2e-24	1	1
ENSAOCP00000029257	EST1	PF10374.9	3.4e-24	1	1
ENSAOCP00000029257	EST1_DNA_bind	PF10373.9	2.1e-40	1	1
ENSAOCP00000014722	EST1_DNA_bind	PF10373.9	2.3e-40	1	1
ENSAOCP00000029257	PIN_4	PF13638.6	5.2e-07	1	1
ENSAOCP00000014722	PIN_4	PF13638.6	5.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000031553	-	3048	-	ENSAOCP00000029257	1015 (aa)	-	-
ENSAOCT00000023163	-	5337	XM_023284450	ENSAOCP00000014722	1123 (aa)	XP_023140218	UPI000C30C3A4

Gene Model

Click here to download ENSAOCG00000019483's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000019483's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000019483	smg5	93	66.598	ENSG00000198952	SMG5	98	64.729	Homo_sapiens
ENSAOCG00000019483	smg5	100	98.403	ENSAPOG00000019690	smg5	100	98.403	Acanthochromis_polyacanthus
ENSAOCG00000019483	smg5	93	65.711	ENSAMEG00000014458	SMG5	100	63.439	Ailuropoda_melanoleuca
ENSAOCG00000019483	smg5	100	85.663	ENSACIG00000001353	smg5	95	89.479	Amphilophus_citrinellus
ENSAOCG00000019483	smg5	100	99.822	ENSAPEG00000022949	smg5	100	99.822	Amphiprion_percula
ENSAOCG00000019483	smg5	100	92.806	ENSATEG00000005348	smg5	100	92.718	Anabas_testudineus
ENSAOCG00000019483	smg5	98	63.978	ENSAPLG00000010263	SMG5	99	63.988	Anas_platyrhynchos
ENSAOCG00000019483	smg5	93	78.066	ENSANAG00000032899	SMG5	99	64.293	Aotus_nancymaae
ENSAOCG00000019483	smg5	100	92.021	ENSACLG00000009311	smg5	100	91.667	Astatotilapia_calliptera
ENSAOCG00000019483	smg5	100	79.359	ENSAMXG00000024616	smg5	100	79.628	Astyanax_mexicanus
ENSAOCG00000019483	smg5	93	67.351	ENSBTAG00000009435	SMG5	98	64.926	Bos_taurus
ENSAOCG00000019483	smg5	88	47.778	ENSBTAG00000021747	-	95	47.778	Bos_taurus
ENSAOCG00000019483	smg5	93	78.066	ENSCJAG00000005684	SMG5	98	64.700	Callithrix_jacchus
ENSAOCG00000019483	smg5	96	64.975	ENSCAFG00000016839	SMG5	98	64.653	Canis_familiaris
ENSAOCG00000019483	smg5	96	64.975	ENSCAFG00020006061	SMG5	98	64.653	Canis_lupus_dingo
ENSAOCG00000019483	smg5	93	78.638	ENSCHIG00000007709	SMG5	98	64.828	Capra_hircus
ENSAOCG00000019483	smg5	88	48.198	ENSCHIG00000006323	-	97	48.198	Capra_hircus
ENSAOCG00000019483	smg5	99	61.621	ENSTSYG00000004099	SMG5	98	64.764	Carlito_syrichta
ENSAOCG00000019483	smg5	83	79.167	ENSCAPG00000003631	SMG5	100	49.339	Cavia_aperea
ENSAOCG00000019483	smg5	93	66.701	ENSCPOG00000015696	SMG5	98	65.316	Cavia_porcellus
ENSAOCG00000019483	smg5	93	78.066	ENSCCAG00000027409	SMG5	99	64.195	Cebus_capucinus
ENSAOCG00000019483	smg5	93	66.701	ENSCATG00000030539	SMG5	98	64.828	Cercocebus_atys
ENSAOCG00000019483	smg5	96	65.613	ENSCLAG00000003983	SMG5	98	65.217	Chinchilla_lanigera
ENSAOCG00000019483	smg5	93	66.701	ENSCSAG00000002120	SMG5	98	64.828	Chlorocebus_sabaeus
ENSAOCG00000019483	smg5	53	75.812	ENSCHOG00000008741	-	57	75.812	Choloepus_hoffmanni
ENSAOCG00000019483	smg5	94	61.998	ENSCPBG00000025848	SMG5	100	62.384	Chrysemys_picta_bellii
ENSAOCG00000019483	smg5	90	32.842	ENSCING00000008706	-	97	31.153	Ciona_intestinalis
ENSAOCG00000019483	smg5	93	64.139	ENSCANG00000029208	SMG5	98	62.069	Colobus_angolensis_palliatus
ENSAOCG00000019483	smg5	99	60.804	ENSCGRG00001006336	Smg5	98	64.787	Cricetulus_griseus_chok1gshd
ENSAOCG00000019483	smg5	93	66.632	ENSCGRG00000005111	Smg5	100	64.851	Cricetulus_griseus_crigri
ENSAOCG00000019483	smg5	100	87.289	ENSCSEG00000014220	smg5	100	86.933	Cynoglossus_semilaevis
ENSAOCG00000019483	smg5	93	82.347	ENSCVAG00000000529	smg5	95	82.030	Cyprinodon_variegatus
ENSAOCG00000019483	smg5	100	77.935	ENSDARG00000041481	smg5	100	78.464	Danio_rerio
ENSAOCG00000019483	smg5	88	78.515	ENSDNOG00000000051	SMG5	98	61.834	Dasypus_novemcinctus
ENSAOCG00000019483	smg5	90	33.262	ENSDNOG00000039862	-	94	39.560	Dasypus_novemcinctus
ENSAOCG00000019483	smg5	99	62.155	ENSDORG00000010382	Smg5	98	65.059	Dipodomys_ordii
ENSAOCG00000019483	smg5	75	85.437	ENSETEG00000010336	SMG5	81	85.437	Echinops_telfairi
ENSAOCG00000019483	smg5	89	46.253	ENSEBUG00000003739	smg5	98	46.211	Eptatretus_burgeri
ENSAOCG00000019483	smg5	93	67.111	ENSEASG00005019122	SMG5	98	64.916	Equus_asinus_asinus
ENSAOCG00000019483	smg5	93	67.008	ENSECAG00000001389	SMG5	98	64.916	Equus_caballus
ENSAOCG00000019483	smg5	68	79.096	ENSEEUG00000012690	SMG5	75	79.096	Erinaceus_europaeus
ENSAOCG00000019483	smg5	100	83.024	ENSELUG00000012585	smg5	100	81.915	Esox_lucius
ENSAOCG00000019483	smg5	99	60.982	ENSFCAG00000011783	SMG5	98	64.548	Felis_catus
ENSAOCG00000019483	smg5	56	68.919	ENSFALG00000001166	-	96	68.243	Ficedula_albicollis
ENSAOCG00000019483	smg5	96	65.343	ENSFDAG00000017388	SMG5	100	65.050	Fukomys_damarensis
ENSAOCG00000019483	smg5	98	78.824	ENSFHEG00000013939	smg5	94	91.429	Fundulus_heteroclitus
ENSAOCG00000019483	smg5	100	78.690	ENSGMOG00000007310	smg5	100	79.581	Gadus_morhua
ENSAOCG00000019483	smg5	99	64.103	ENSGALG00000029918	-	99	64.436	Gallus_gallus
ENSAOCG00000019483	smg5	93	91.054	ENSGAFG00000021691	smg5	99	91.054	Gambusia_affinis
ENSAOCG00000019483	smg5	100	88.053	ENSGACG00000013142	smg5	100	87.611	Gasterosteus_aculeatus
ENSAOCG00000019483	smg5	99	63.693	ENSGAGG00000016131	SMG5	99	63.498	Gopherus_agassizii
ENSAOCG00000019483	smg5	93	66.393	ENSGGOG00000010932	SMG5	98	64.631	Gorilla_gorilla
ENSAOCG00000019483	smg5	100	91.837	ENSHBUG00000008654	smg5	100	92.014	Haplochromis_burtoni
ENSAOCG00000019483	smg5	99	60.989	ENSHGLG00000019152	SMG5	97	64.321	Heterocephalus_glaber_female
ENSAOCG00000019483	smg5	86	66.446	ENSHGLG00100015948	SMG5	97	66.336	Heterocephalus_glaber_male
ENSAOCG00000019483	smg5	86	78.271	ENSHCOG00000010229	smg5	94	83.133	Hippocampus_comes
ENSAOCG00000019483	smg5	100	78.042	ENSIPUG00000006624	Smg5	100	78.004	Ictalurus_punctatus
ENSAOCG00000019483	smg5	99	61.264	ENSSTOG00000001780	SMG5	98	64.897	Ictidomys_tridecemlineatus
ENSAOCG00000019483	smg5	99	61.532	ENSJJAG00000022763	Smg5	98	64.833	Jaculus_jaculus
ENSAOCG00000019483	smg5	100	91.192	ENSKMAG00000014586	smg5	100	91.548	Kryptolebias_marmoratus
ENSAOCG00000019483	smg5	100	92.431	ENSLBEG00000002145	smg5	100	92.787	Labrus_bergylta
ENSAOCG00000019483	smg5	99	57.811	ENSLACG00000010521	SMG5	99	57.257	Latimeria_chalumnae
ENSAOCG00000019483	smg5	90	86.914	ENSLOCG00000008380	smg5	99	71.862	Lepisosteus_oculatus
ENSAOCG00000019483	smg5	92	67.638	ENSLAFG00000006241	SMG5	98	65.015	Loxodonta_africana
ENSAOCG00000019483	smg5	93	66.701	ENSMFAG00000045357	SMG5	98	64.828	Macaca_fascicularis
ENSAOCG00000019483	smg5	93	78.302	ENSMMUG00000000090	SMG5	98	65.898	Macaca_mulatta
ENSAOCG00000019483	smg5	93	66.598	ENSMNEG00000044425	SMG5	98	64.729	Macaca_nemestrina
ENSAOCG00000019483	smg5	93	68.396	ENSMLEG00000041192	SMG5	98	59.372	Mandrillus_leucophaeus
ENSAOCG00000019483	smg5	100	92.444	ENSMAMG00000010683	smg5	100	92.889	Mastacembelus_armatus
ENSAOCG00000019483	smg5	66	78.408	ENSMZEG00005016543	smg5	96	84.441	Maylandia_zebra
ENSAOCG00000019483	smg5	100	81.422	ENSMZEG00005015815	smg5	96	85.204	Maylandia_zebra
ENSAOCG00000019483	smg5	93	66.393	ENSMAUG00000010381	Smg5	98	64.787	Mesocricetus_auratus
ENSAOCG00000019483	smg5	54	43.563	ENSMAUG00000000043	-	75	48.506	Mesocricetus_auratus
ENSAOCG00000019483	smg5	93	66.564	ENSMICG00000002257	SMG5	98	64.665	Microcebus_murinus
ENSAOCG00000019483	smg5	51	44.551	ENSMOCG00000008423	-	68	51.238	Microtus_ochrogaster
ENSAOCG00000019483	smg5	95	65.660	ENSMOCG00000016590	Smg5	99	63.848	Microtus_ochrogaster
ENSAOCG00000019483	smg5	100	86.348	ENSMMOG00000017199	smg5	100	87.057	Mola_mola
ENSAOCG00000019483	smg5	83	66.856	ENSMODG00000016901	SMG5	96	66.780	Monodelphis_domestica
ENSAOCG00000019483	smg5	78	33.846	ENSMODG00000010675	-	90	34.103	Monodelphis_domestica
ENSAOCG00000019483	smg5	73	33.756	ENSMODG00000004735	-	86	35.040	Monodelphis_domestica
ENSAOCG00000019483	smg5	77	35.677	ENSMODG00000004532	-	91	33.850	Monodelphis_domestica
ENSAOCG00000019483	smg5	86	34.101	ENSMODG00000004511	-	81	34.465	Monodelphis_domestica
ENSAOCG00000019483	smg5	100	90.569	ENSMALG00000010375	smg5	100	90.125	Monopterus_albus
ENSAOCG00000019483	smg5	99	60.963	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSAOCG00000019483	smg5	99	60.893	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSAOCG00000019483	smg5	99	60.893	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSAOCG00000019483	smg5	99	61.037	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSAOCG00000019483	smg5	89	64.984	ENSMPUG00000004546	SMG5	93	74.468	Mustela_putorius_furo
ENSAOCG00000019483	smg5	99	61.977	ENSMLUG00000008518	SMG5	98	65.282	Myotis_lucifugus
ENSAOCG00000019483	smg5	98	64.831	ENSNGAG00000020706	Smg5	99	63.715	Nannospalax_galili
ENSAOCG00000019483	smg5	92	40.105	ENSNGAG00000012101	-	86	49.507	Nannospalax_galili
ENSAOCG00000019483	smg5	93	85.564	ENSNBRG00000004332	smg5	96	85.669	Neolamprologus_brichardi
ENSAOCG00000019483	smg5	93	66.598	ENSNLEG00000012439	SMG5	98	64.729	Nomascus_leucogenys
ENSAOCG00000019483	smg5	96	64.222	ENSMEUG00000012834	SMG5	98	63.861	Notamacropus_eugenii
ENSAOCG00000019483	smg5	99	61.313	ENSOPRG00000009152	SMG5	98	64.503	Ochotona_princeps
ENSAOCG00000019483	smg5	99	61.077	ENSODEG00000012237	SMG5	98	65.350	Octodon_degus
ENSAOCG00000019483	smg5	100	91.563	ENSONIG00000008632	smg5	100	91.918	Oreochromis_niloticus
ENSAOCG00000019483	smg5	93	66.905	ENSOCUG00000012886	SMG5	100	64.688	Oryctolagus_cuniculus
ENSAOCG00000019483	smg5	86	37.416	ENSOCUG00000023338	-	90	43.548	Oryctolagus_cuniculus
ENSAOCG00000019483	smg5	100	86.121	ENSORLG00000016239	smg5	100	87.389	Oryzias_latipes
ENSAOCG00000019483	smg5	100	86.400	ENSORLG00020013127	smg5	100	87.289	Oryzias_latipes_hni
ENSAOCG00000019483	smg5	100	85.943	ENSORLG00015019014	smg5	100	87.200	Oryzias_latipes_hsok
ENSAOCG00000019483	smg5	84	85.790	ENSOMEG00000021330	smg5	92	86.772	Oryzias_melastigma
ENSAOCG00000019483	smg5	95	65.222	ENSOGAG00000004966	SMG5	99	63.389	Otolemur_garnettii
ENSAOCG00000019483	smg5	88	48.124	ENSOARG00000011963	-	97	48.124	Ovis_aries
ENSAOCG00000019483	smg5	93	78.638	ENSOARG00000005778	SMG5	98	64.828	Ovis_aries
ENSAOCG00000019483	smg5	93	66.496	ENSPPAG00000011996	SMG5	98	64.631	Pan_paniscus
ENSAOCG00000019483	smg5	93	66.049	ENSPPRG00000011901	SMG5	100	64.328	Panthera_pardus
ENSAOCG00000019483	smg5	95	63.507	ENSPTIG00000007892	SMG5	98	62.677	Panthera_tigris_altaica
ENSAOCG00000019483	smg5	86	78.310	ENSPTRG00000049282	-	98	64.631	Pan_troglodytes
ENSAOCG00000019483	smg5	93	66.496	ENSPTRG00000023925	SMG5	98	64.631	Pan_troglodytes
ENSAOCG00000019483	smg5	93	66.701	ENSPANG00000011201	SMG5	98	64.828	Papio_anubis
ENSAOCG00000019483	smg5	100	76.413	ENSPKIG00000009402	smg5	100	77.087	Paramormyrops_kingsleyae
ENSAOCG00000019483	smg5	96	66.108	ENSPSIG00000015198	SMG5	99	65.714	Pelodiscus_sinensis
ENSAOCG00000019483	smg5	100	73.316	ENSPMGG00000010465	smg5	100	72.808	Periophthalmus_magnuspinnatus
ENSAOCG00000019483	smg5	99	61.875	ENSPEMG00000001819	Smg5	98	64.787	Peromyscus_maniculatus_bairdii
ENSAOCG00000019483	smg5	55	40.582	ENSPEMG00000010022	-	68	50.248	Peromyscus_maniculatus_bairdii
ENSAOCG00000019483	smg5	85	61.916	ENSPMAG00000000410	smg5	91	62.408	Petromyzon_marinus
ENSAOCG00000019483	smg5	98	64.376	ENSPCIG00000018938	SMG5	99	64.306	Phascolarctos_cinereus
ENSAOCG00000019483	smg5	100	88.780	ENSPFOG00000010191	smg5	100	88.691	Poecilia_formosa
ENSAOCG00000019483	smg5	100	88.691	ENSPLAG00000009332	smg5	100	88.869	Poecilia_latipinna
ENSAOCG00000019483	smg5	100	88.869	ENSPMEG00000014105	smg5	100	88.780	Poecilia_mexicana
ENSAOCG00000019483	smg5	100	89.047	ENSPREG00000017713	smg5	100	89.403	Poecilia_reticulata
ENSAOCG00000019483	smg5	93	66.598	ENSPPYG00000000723	SMG5	98	64.729	Pongo_abelii
ENSAOCG00000019483	smg5	77	80.556	ENSPCAG00000008412	SMG5	75	88.268	Procavia_capensis
ENSAOCG00000019483	smg5	93	78.860	ENSPCOG00000004741	SMG5	98	64.897	Propithecus_coquereli
ENSAOCG00000019483	smg5	93	65.566	ENSPVAG00000016748	SMG5	98	58.119	Pteropus_vampyrus
ENSAOCG00000019483	smg5	100	91.512	ENSPNYG00000013397	smg5	100	91.512	Pundamilia_nyererei
ENSAOCG00000019483	smg5	100	78.844	ENSPNAG00000028363	smg5	100	79.467	Pygocentrus_nattereri
ENSAOCG00000019483	smg5	99	60.893	ENSRNOG00000019590	Smg5	98	64.590	Rattus_norvegicus
ENSAOCG00000019483	smg5	93	66.598	ENSRBIG00000027428	SMG5	98	64.729	Rhinopithecus_bieti
ENSAOCG00000019483	smg5	93	66.496	ENSRROG00000030035	SMG5	98	64.631	Rhinopithecus_roxellana
ENSAOCG00000019483	smg5	93	78.302	ENSSBOG00000033339	SMG5	98	64.700	Saimiri_boliviensis_boliviensis
ENSAOCG00000019483	smg5	79	35.253	ENSSHAG00000000561	-	88	36.829	Sarcophilus_harrisii
ENSAOCG00000019483	smg5	96	64.798	ENSSHAG00000014163	SMG5	100	64.798	Sarcophilus_harrisii
ENSAOCG00000019483	smg5	91	32.004	ENSSHAG00000009572	-	87	37.810	Sarcophilus_harrisii
ENSAOCG00000019483	smg5	63	33.682	ENSSHAG00000000935	-	84	35.529	Sarcophilus_harrisii
ENSAOCG00000019483	smg5	100	77.377	ENSSFOG00015024175	smg5	100	76.720	Scleropages_formosus
ENSAOCG00000019483	smg5	100	92.794	ENSSMAG00000013059	smg5	100	93.060	Scophthalmus_maximus
ENSAOCG00000019483	smg5	100	94.425	ENSSDUG00000007122	smg5	100	94.779	Seriola_dumerili
ENSAOCG00000019483	smg5	100	94.494	ENSSLDG00000011418	smg5	100	94.849	Seriola_lalandi_dorsalis
ENSAOCG00000019483	smg5	86	58.583	ENSSARG00000012484	SMG5	94	70.504	Sorex_araneus
ENSAOCG00000019483	smg5	92	64.659	ENSSPUG00000002260	SMG5	99	64.293	Sphenodon_punctatus
ENSAOCG00000019483	smg5	100	95.833	ENSSPAG00000014266	smg5	100	95.745	Stegastes_partitus
ENSAOCG00000019483	smg5	91	60.260	ENSSSCG00000039308	-	96	51.979	Sus_scrofa
ENSAOCG00000019483	smg5	93	67.111	ENSSSCG00000006490	-	100	64.410	Sus_scrofa
ENSAOCG00000019483	smg5	99	63.936	ENSTGUG00000003748	-	99	65.107	Taeniopygia_guttata
ENSAOCG00000019483	smg5	100	82.478	ENSTRUG00000012580	smg5	100	82.832	Takifugu_rubripes
ENSAOCG00000019483	smg5	100	82.099	ENSTNIG00000010303	smg5	100	82.099	Tetraodon_nigroviridis
ENSAOCG00000019483	smg5	53	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSAOCG00000019483	smg5	99	58.415	ENSTTRG00000001401	SMG5	94	63.255	Tursiops_truncatus
ENSAOCG00000019483	smg5	92	76.667	ENSUAMG00000013721	SMG5	93	75.342	Ursus_americanus
ENSAOCG00000019483	smg5	91	74.815	ENSUMAG00000018041	SMG5	95	73.131	Ursus_maritimus
ENSAOCG00000019483	smg5	87	74.713	ENSVPAG00000009446	SMG5	99	56.903	Vicugna_pacos
ENSAOCG00000019483	smg5	96	65.075	ENSVVUG00000005887	SMG5	98	64.484	Vulpes_vulpes
ENSAOCG00000019483	smg5	79	53.675	ENSXETG00000033791	SMG5	99	57.054	Xenopus_tropicalis
ENSAOCG00000019483	smg5	92	91.892	ENSXCOG00000004379	smg5	100	91.892	Xiphophorus_couchianus
ENSAOCG00000019483	smg5	100	87.979	ENSXMAG00000013499	smg5	100	88.335	Xiphophorus_maculatus