EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000020784 (Gene tree)
Gene ID: 111584060
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 7613 bases
Position: chrNXFZ01004212.1:104336-111948
Accession: 111584060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000030078	Smg4_UPF3	PF03467.15	5.3e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000024786	-	3050	XM_023293312	ENSAOCP00000030078	463 (aa)	XP_023149080	UPI000C317E03

Gene Model

Click here to download ENSAOCG00000020784's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000020784's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000020784	upf3a	60	62.373	ENSAOCG00000000706	upf3b	93	49.654

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000020784	upf3a	88	57.407	ENSG00000169062	UPF3A	90	57.639	Homo_sapiens
ENSAOCG00000020784	upf3a	100	98.920	ENSAPOG00000013484	upf3a	100	98.920	Acanthochromis_polyacanthus
ENSAOCG00000020784	upf3a	98	93.487	ENSACIG00000020468	upf3a	99	93.487	Amphilophus_citrinellus
ENSAOCG00000020784	upf3a	100	100.000	ENSAPEG00000003519	upf3a	100	100.000	Amphiprion_percula
ENSAOCG00000020784	upf3a	100	95.464	ENSATEG00000005843	upf3a	100	95.464	Anabas_testudineus
ENSAOCG00000020784	upf3a	82	67.342	ENSACAG00000001540	UPF3A	94	67.342	Anolis_carolinensis
ENSAOCG00000020784	upf3a	82	51.471	ENSANAG00000021894	-	77	70.303	Aotus_nancymaae
ENSAOCG00000020784	upf3a	83	45.301	ENSANAG00000025598	-	70	66.667	Aotus_nancymaae
ENSAOCG00000020784	upf3a	94	52.411	ENSANAG00000021713	UPF3A	99	52.830	Aotus_nancymaae
ENSAOCG00000020784	upf3a	100	93.555	ENSACLG00000026274	upf3a	100	93.555	Astatotilapia_calliptera
ENSAOCG00000020784	upf3a	98	84.361	ENSAMXG00000002608	upf3a	99	84.176	Astyanax_mexicanus
ENSAOCG00000020784	upf3a	90	55.756	ENSCJAG00000019102	UPF3A	95	55.361	Callithrix_jacchus
ENSAOCG00000020784	upf3a	82	51.471	ENSCJAG00000004975	UPF3B	77	69.697	Callithrix_jacchus
ENSAOCG00000020784	upf3a	84	46.117	ENSCAFG00020004074	UPF3B	69	66.279	Canis_lupus_dingo
ENSAOCG00000020784	upf3a	88	55.324	ENSCHIG00000008682	UPF3A	85	55.324	Capra_hircus
ENSAOCG00000020784	upf3a	82	51.699	ENSTSYG00000014690	UPF3B	76	65.294	Carlito_syrichta
ENSAOCG00000020784	upf3a	75	54.400	ENSTSYG00000001918	UPF3A	99	54.400	Carlito_syrichta
ENSAOCG00000020784	upf3a	90	56.433	ENSCCAG00000018406	UPF3A	99	54.603	Cebus_capucinus
ENSAOCG00000020784	upf3a	81	38.961	ENSCCAG00000029813	-	52	59.494	Cebus_capucinus
ENSAOCG00000020784	upf3a	92	57.562	ENSCATG00000029733	UPF3A	95	57.812	Cercocebus_atys
ENSAOCG00000020784	upf3a	92	57.363	ENSCSAG00000017388	UPF3A	95	56.957	Chlorocebus_sabaeus
ENSAOCG00000020784	upf3a	81	58.684	ENSCGRG00001017387	Upf3a	87	58.445	Cricetulus_griseus_chok1gshd
ENSAOCG00000020784	upf3a	81	58.684	ENSCGRG00000001468	Upf3a	87	56.477	Cricetulus_griseus_crigri
ENSAOCG00000020784	upf3a	99	91.558	ENSCSEG00000005106	upf3a	99	91.558	Cynoglossus_semilaevis
ENSAOCG00000020784	upf3a	100	89.009	ENSCVAG00000022333	upf3a	100	89.009	Cyprinodon_variegatus
ENSAOCG00000020784	upf3a	99	81.210	ENSDARG00000069297	upf3a	100	81.210	Danio_rerio
ENSAOCG00000020784	upf3a	81	60.902	ENSDNOG00000034391	UPF3A	90	61.404	Dasypus_novemcinctus
ENSAOCG00000020784	upf3a	92	52.586	ENSETEG00000010110	UPF3A	96	52.586	Echinops_telfairi
ENSAOCG00000020784	upf3a	82	48.250	ENSEASG00005012919	UPF3B	62	69.565	Equus_asinus_asinus
ENSAOCG00000020784	upf3a	82	48.250	ENSECAG00000016947	UPF3B	62	62.857	Equus_caballus
ENSAOCG00000020784	upf3a	98	83.948	ENSELUG00000011050	upf3a	99	83.766	Esox_lucius
ENSAOCG00000020784	upf3a	90	58.465	ENSFCAG00000014602	UPF3A	92	58.465	Felis_catus
ENSAOCG00000020784	upf3a	100	91.164	ENSGAFG00000021170	upf3a	100	91.164	Gambusia_affinis
ENSAOCG00000020784	upf3a	69	84.062	ENSGACG00000001972	upf3a	100	84.062	Gasterosteus_aculeatus
ENSAOCG00000020784	upf3a	51	67.886	ENSGACG00000017435	upf3b	60	71.951	Gasterosteus_aculeatus
ENSAOCG00000020784	upf3a	88	58.156	ENSGGOG00000015428	UPF3A	90	58.156	Gorilla_gorilla
ENSAOCG00000020784	upf3a	81	48.320	ENSGGOG00000043074	-	80	46.770	Gorilla_gorilla
ENSAOCG00000020784	upf3a	80	48.936	ENSGGOG00000041219	-	85	47.013	Gorilla_gorilla
ENSAOCG00000020784	upf3a	100	96.976	ENSHBUG00000011325	upf3a	100	96.976	Haplochromis_burtoni
ENSAOCG00000020784	upf3a	82	54.453	ENSHGLG00000001544	UPF3A	50	67.633	Heterocephalus_glaber_female
ENSAOCG00000020784	upf3a	82	54.453	ENSHGLG00100013244	UPF3A	50	67.633	Heterocephalus_glaber_male
ENSAOCG00000020784	upf3a	94	81.364	ENSHCOG00000013985	upf3a	94	81.818	Hippocampus_comes
ENSAOCG00000020784	upf3a	99	81.210	ENSIPUG00000023450	upf3a	100	81.210	Ictalurus_punctatus
ENSAOCG00000020784	upf3a	100	94.828	ENSKMAG00000004381	upf3a	100	94.828	Kryptolebias_marmoratus
ENSAOCG00000020784	upf3a	98	89.451	ENSLBEG00000021570	upf3a	100	89.497	Labrus_bergylta
ENSAOCG00000020784	upf3a	60	43.402	ENSLACG00000006645	UPF3A	66	87.500	Latimeria_chalumnae
ENSAOCG00000020784	upf3a	97	75.817	ENSLOCG00000002665	upf3a	98	75.817	Lepisosteus_oculatus
ENSAOCG00000020784	upf3a	92	56.236	ENSMFAG00000045016	UPF3A	95	56.054	Macaca_fascicularis
ENSAOCG00000020784	upf3a	87	58.780	ENSMMUG00000007449	UPF3A	95	57.403	Macaca_mulatta
ENSAOCG00000020784	upf3a	84	60.000	ENSMNEG00000036402	UPF3A	83	60.000	Macaca_nemestrina
ENSAOCG00000020784	upf3a	84	59.494	ENSMLEG00000014726	UPF3A	94	59.500	Mandrillus_leucophaeus
ENSAOCG00000020784	upf3a	100	91.649	ENSMAMG00000018364	upf3a	100	91.649	Mastacembelus_armatus
ENSAOCG00000020784	upf3a	100	93.555	ENSMZEG00005021571	upf3a	100	93.555	Maylandia_zebra
ENSAOCG00000020784	upf3a	85	64.303	ENSMGAG00000014837	UPF3A	99	64.303	Meleagris_gallopavo
ENSAOCG00000020784	upf3a	54	72.000	ENSMOCG00000000550	Upf3a	57	68.812	Microtus_ochrogaster
ENSAOCG00000020784	upf3a	100	88.958	ENSMMOG00000019751	upf3a	100	88.958	Mola_mola
ENSAOCG00000020784	upf3a	83	67.419	ENSMODG00000003159	UPF3A	93	68.250	Monodelphis_domestica
ENSAOCG00000020784	upf3a	80	61.436	MGP_PahariEiJ_G0021311	Upf3a	87	58.933	Mus_pahari
ENSAOCG00000020784	upf3a	91	56.114	ENSMPUG00000009139	UPF3A	90	57.666	Mustela_putorius_furo
ENSAOCG00000020784	upf3a	80	61.125	ENSMLUG00000015905	UPF3A	92	61.125	Myotis_lucifugus
ENSAOCG00000020784	upf3a	87	54.588	ENSNGAG00000019314	Upf3a	54	63.717	Nannospalax_galili
ENSAOCG00000020784	upf3a	100	96.760	ENSNBRG00000000828	upf3a	100	96.760	Neolamprologus_brichardi
ENSAOCG00000020784	upf3a	88	58.491	ENSNLEG00000007563	UPF3A	90	58.491	Nomascus_leucogenys
ENSAOCG00000020784	upf3a	100	96.352	ENSONIG00000006817	upf3a	100	96.352	Oreochromis_niloticus
ENSAOCG00000020784	upf3a	76	56.793	ENSOANG00000006985	-	95	56.183	Ornithorhynchus_anatinus
ENSAOCG00000020784	upf3a	100	87.152	ENSORLG00000010911	upf3a	100	87.152	Oryzias_latipes
ENSAOCG00000020784	upf3a	82	44.175	ENSORLG00020003758	upf3b	51	69.595	Oryzias_latipes_hni
ENSAOCG00000020784	upf3a	100	86.393	ENSORLG00020014317	upf3a	100	86.393	Oryzias_latipes_hni
ENSAOCG00000020784	upf3a	100	87.257	ENSORLG00015017339	upf3a	58	87.257	Oryzias_latipes_hsok
ENSAOCG00000020784	upf3a	100	89.417	ENSOMEG00000014425	upf3a	100	89.417	Oryzias_melastigma
ENSAOCG00000020784	upf3a	73	61.891	ENSOGAG00000004788	UPF3A	84	61.891	Otolemur_garnettii
ENSAOCG00000020784	upf3a	83	58.706	ENSOARG00000009004	UPF3A	84	58.706	Ovis_aries
ENSAOCG00000020784	upf3a	88	57.176	ENSPPAG00000042267	UPF3A	91	56.944	Pan_paniscus
ENSAOCG00000020784	upf3a	90	58.239	ENSPPRG00000025062	UPF3A	92	58.239	Panthera_pardus
ENSAOCG00000020784	upf3a	88	57.176	ENSPTRG00000006073	UPF3A	90	56.944	Pan_troglodytes
ENSAOCG00000020784	upf3a	80	44.935	ENSPTRG00000051640	-	85	43.636	Pan_troglodytes
ENSAOCG00000020784	upf3a	93	58.166	ENSPANG00000004346	UPF3A	95	58.166	Papio_anubis
ENSAOCG00000020784	upf3a	89	50.222	ENSPKIG00000019226	upf3b	86	68.794	Paramormyrops_kingsleyae
ENSAOCG00000020784	upf3a	88	77.536	ENSPKIG00000004422	upf3a	98	70.833	Paramormyrops_kingsleyae
ENSAOCG00000020784	upf3a	83	67.677	ENSPSIG00000007468	UPF3A	96	67.677	Pelodiscus_sinensis
ENSAOCG00000020784	upf3a	100	84.536	ENSPMGG00000012696	upf3a	100	84.536	Periophthalmus_magnuspinnatus
ENSAOCG00000020784	upf3a	80	60.108	ENSPEMG00000019968	-	87	57.990	Peromyscus_maniculatus_bairdii
ENSAOCG00000020784	upf3a	73	70.925	ENSPCIG00000019590	-	90	70.388	Phascolarctos_cinereus
ENSAOCG00000020784	upf3a	100	92.225	ENSPFOG00000013222	upf3a	100	92.225	Poecilia_formosa
ENSAOCG00000020784	upf3a	98	91.028	ENSPLAG00000011960	upf3a	100	91.028	Poecilia_latipinna
ENSAOCG00000020784	upf3a	100	87.992	ENSPMEG00000000836	upf3a	100	87.992	Poecilia_mexicana
ENSAOCG00000020784	upf3a	88	57.407	ENSPPYG00000005536	UPF3A	90	57.639	Pongo_abelii
ENSAOCG00000020784	upf3a	85	45.368	ENSPCOG00000021960	UPF3B	51	70.732	Propithecus_coquereli
ENSAOCG00000020784	upf3a	82	58.418	ENSPVAG00000005656	UPF3A	82	54.745	Pteropus_vampyrus
ENSAOCG00000020784	upf3a	100	93.555	ENSPNYG00000011289	upf3a	100	93.555	Pundamilia_nyererei
ENSAOCG00000020784	upf3a	99	81.818	ENSPNAG00000019532	upf3a	100	82.057	Pygocentrus_nattereri
ENSAOCG00000020784	upf3a	83	52.482	ENSPNAG00000021528	upf3b	54	74.233	Pygocentrus_nattereri
ENSAOCG00000020784	upf3a	71	63.444	ENSRNOG00000017397	Upf3a	81	63.444	Rattus_norvegicus
ENSAOCG00000020784	upf3a	87	58.621	ENSRBIG00000034007	UPF3A	93	58.454	Rhinopithecus_bieti
ENSAOCG00000020784	upf3a	84	59.645	ENSRROG00000012212	UPF3A	85	59.649	Rhinopithecus_roxellana
ENSAOCG00000020784	upf3a	90	50.113	ENSSBOG00000029989	UPF3A	95	49.891	Saimiri_boliviensis_boliviensis
ENSAOCG00000020784	upf3a	82	51.463	ENSSBOG00000019740	UPF3B	78	71.166	Saimiri_boliviensis_boliviensis
ENSAOCG00000020784	upf3a	83	67.929	ENSSHAG00000009895	UPF3A	94	68.514	Sarcophilus_harrisii
ENSAOCG00000020784	upf3a	99	71.922	ENSSFOG00015021851	upf3a	100	71.058	Scleropages_formosus
ENSAOCG00000020784	upf3a	100	85.540	ENSSMAG00000003858	upf3a	100	86.762	Scophthalmus_maximus
ENSAOCG00000020784	upf3a	52	68.526	ENSSMAG00000012913	upf3b	53	74.233	Scophthalmus_maximus
ENSAOCG00000020784	upf3a	100	93.737	ENSSDUG00000009680	upf3a	100	93.737	Seriola_dumerili
ENSAOCG00000020784	upf3a	100	96.976	ENSSLDG00000009700	upf3a	100	96.976	Seriola_lalandi_dorsalis
ENSAOCG00000020784	upf3a	100	97.624	ENSSPAG00000007938	upf3a	100	97.624	Stegastes_partitus
ENSAOCG00000020784	upf3a	87	56.338	ENSSSCG00000024679	UPF3A	51	69.712	Sus_scrofa
ENSAOCG00000020784	upf3a	82	68.608	ENSTGUG00000009493	UPF3A	99	68.608	Taeniopygia_guttata
ENSAOCG00000020784	upf3a	98	87.033	ENSTRUG00000012730	upf3a	99	87.033	Takifugu_rubripes
ENSAOCG00000020784	upf3a	83	77.665	ENSTNIG00000014973	upf3a	100	77.157	Tetraodon_nigroviridis
ENSAOCG00000020784	upf3a	84	45.894	ENSUAMG00000024565	UPF3B	66	63.750	Ursus_americanus
ENSAOCG00000020784	upf3a	80	59.008	ENSVPAG00000003525	UPF3A	94	57.702	Vicugna_pacos
ENSAOCG00000020784	upf3a	82	46.617	ENSVVUG00000011594	UPF3B	77	70.303	Vulpes_vulpes
ENSAOCG00000020784	upf3a	90	55.841	ENSXETG00000002572	upf3a	100	55.841	Xenopus_tropicalis
ENSAOCG00000020784	upf3a	83	46.040	ENSXETG00000007440	upf3b	71	72.393	Xenopus_tropicalis
ENSAOCG00000020784	upf3a	100	91.810	ENSXMAG00000013452	upf3a	100	91.810	Xiphophorus_maculatus