EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000021616 (Gene tree)
Gene ID: 111573208
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 69169 bases
Position: chrNXFZ01002903.1:134846-204014
Accession: 111573208
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000016620	RRM_1	PF00076.22	3.2e-13	1	1
ENSAOCP00000016643	RRM_1	PF00076.22	3.6e-13	1	1
ENSAOCP00000030559	RRM_1	PF00076.22	3.6e-13	1	1
ENSAOCP00000016632	RRM_1	PF00076.22	3.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000032368	-	1559	XM_023277238	ENSAOCP00000016632	322 (aa)	XP_023133006	UPI000C3049B0
ENSAOCT00000032371	-	897	-	ENSAOCP00000016620	298 (aa)	-	-
ENSAOCT00000025675	-	3496	-	ENSAOCP00000016643	321 (aa)	-	-
ENSAOCT00000032375	-	3496	-	ENSAOCP00000030559	321 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000021616's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000021616's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000021616	-	92	47.588	ENSAOCG00000023599	-	80	52.521
ENSAOCG00000021616	-	70	60.909	ENSAOCG00000001605	-	75	56.889
ENSAOCG00000021616	-	95	44.872	ENSAOCG00000009883	raly	64	52.830
ENSAOCG00000021616	-	78	88.142	ENSAOCG00000003896	-	89	82.310

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000021616	-	71	57.477	ENSG00000184672	RALYL	93	75.949	Homo_sapiens
ENSAOCG00000021616	-	78	87.747	ENSAPOG00000006963	hnrnpc	89	81.949	Acanthochromis_polyacanthus
ENSAOCG00000021616	-	79	83.784	ENSACIG00000000270	-	99	68.121	Amphilophus_citrinellus
ENSAOCG00000021616	-	97	91.346	ENSACIG00000016568	-	99	91.883	Amphilophus_citrinellus
ENSAOCG00000021616	-	100	99.065	ENSAPEG00000019962	-	100	99.065	Amphiprion_percula
ENSAOCG00000021616	-	78	88.142	ENSAPEG00000001489	-	89	82.310	Amphiprion_percula
ENSAOCG00000021616	-	100	80.449	ENSATEG00000018006	-	100	88.720	Anabas_testudineus
ENSAOCG00000021616	-	79	83.721	ENSATEG00000011734	-	84	81.890	Anabas_testudineus
ENSAOCG00000021616	-	71	55.310	ENSAPLG00000015574	RALYL	79	53.419	Anas_platyrhynchos
ENSAOCG00000021616	-	71	55.310	ENSACAG00000028464	RALYL	78	53.846	Anolis_carolinensis
ENSAOCG00000021616	-	70	58.019	ENSANAG00000023383	RALYL	78	55.856	Aotus_nancymaae
ENSAOCG00000021616	-	78	82.609	ENSACLG00000000995	-	82	85.520	Astatotilapia_calliptera
ENSAOCG00000021616	-	78	82.213	ENSACLG00000013636	-	84	80.237	Astatotilapia_calliptera
ENSAOCG00000021616	-	83	93.258	ENSACLG00000005707	-	90	93.258	Astatotilapia_calliptera
ENSAOCG00000021616	-	68	78.218	ENSAMXG00000042946	hnrnpc	100	73.980	Astyanax_mexicanus
ENSAOCG00000021616	-	82	79.167	ENSAMXG00000034915	zgc:55733	86	76.800	Astyanax_mexicanus
ENSAOCG00000021616	-	70	58.019	ENSCJAG00000000402	RALYL	78	55.856	Callithrix_jacchus
ENSAOCG00000021616	-	70	55.605	ENSCPOG00000012314	RALYL	78	53.648	Cavia_porcellus
ENSAOCG00000021616	-	70	58.019	ENSCCAG00000025003	RALYL	77	75.949	Cebus_capucinus
ENSAOCG00000021616	-	71	57.477	ENSCATG00000042145	RALYL	78	55.856	Cercocebus_atys
ENSAOCG00000021616	-	70	55.605	ENSCLAG00000005228	RALYL	78	53.648	Chinchilla_lanigera
ENSAOCG00000021616	-	71	53.982	ENSCHOG00000013228	RALYL	76	51.064	Choloepus_hoffmanni
ENSAOCG00000021616	-	71	57.477	ENSCANG00000039144	RALYL	78	55.856	Colobus_angolensis_palliatus
ENSAOCG00000021616	-	71	54.867	ENSCGRG00001009241	Ralyl	78	52.991	Cricetulus_griseus_chok1gshd
ENSAOCG00000021616	-	78	88.446	ENSCSEG00000021349	-	78	86.056	Cynoglossus_semilaevis
ENSAOCG00000021616	-	76	75.877	ENSCSEG00000019769	-	80	71.074	Cynoglossus_semilaevis
ENSAOCG00000021616	-	100	86.503	ENSCVAG00000016981	-	100	84.356	Cyprinodon_variegatus
ENSAOCG00000021616	-	86	65.836	ENSCVAG00000002797	-	85	66.142	Cyprinodon_variegatus
ENSAOCG00000021616	-	77	80.567	ENSDARG00000053810	hnrnpc	95	72.816	Danio_rerio
ENSAOCG00000021616	-	84	78.439	ENSDARG00000103845	zgc:55733	90	76.800	Danio_rerio
ENSAOCG00000021616	-	71	55.752	ENSDORG00000003721	Ralyl	78	53.846	Dipodomys_ordii
ENSAOCG00000021616	-	55	55.747	ENSETEG00000014028	RALYL	82	58.642	Echinops_telfairi
ENSAOCG00000021616	-	70	49.770	ENSEBUG00000006049	RALYL	74	48.357	Eptatretus_burgeri
ENSAOCG00000021616	-	95	39.752	ENSEBUG00000012363	hnrnpc	67	46.491	Eptatretus_burgeri
ENSAOCG00000021616	-	71	55.310	ENSEEUG00000007202	RALYL	80	54.077	Erinaceus_europaeus
ENSAOCG00000021616	-	96	77.389	ENSELUG00000004132	-	99	75.962	Esox_lucius
ENSAOCG00000021616	-	99	68.350	ENSELUG00000007714	-	99	67.003	Esox_lucius
ENSAOCG00000021616	-	71	57.407	ENSFALG00000008647	RALYL	97	56.542	Ficedula_albicollis
ENSAOCG00000021616	-	87	75.704	ENSFHEG00000003605	-	83	75.984	Fundulus_heteroclitus
ENSAOCG00000021616	-	97	79.205	ENSFHEG00000007278	-	99	78.328	Fundulus_heteroclitus
ENSAOCG00000021616	-	70	58.411	ENSGALG00000036938	RALYL	95	41.298	Gallus_gallus
ENSAOCG00000021616	-	97	88.462	ENSGAFG00000020992	-	99	87.662	Gambusia_affinis
ENSAOCG00000021616	-	87	75.000	ENSGAFG00000020486	-	82	78.539	Gambusia_affinis
ENSAOCG00000021616	-	76	74.336	ENSGACG00000018932	-	90	69.027	Gasterosteus_aculeatus
ENSAOCG00000021616	-	100	78.979	ENSGACG00000017772	-	96	90.800	Gasterosteus_aculeatus
ENSAOCG00000021616	-	71	57.477	ENSGGOG00000000841	RALYL	78	55.856	Gorilla_gorilla
ENSAOCG00000021616	-	96	67.155	ENSHBUG00000018342	-	82	81.028	Haplochromis_burtoni
ENSAOCG00000021616	-	100	89.198	ENSHBUG00000010527	-	100	89.506	Haplochromis_burtoni
ENSAOCG00000021616	-	70	55.157	ENSHGLG00000004866	RALYL	78	53.219	Heterocephalus_glaber_female
ENSAOCG00000021616	-	70	55.157	ENSHGLG00100017480	RALYL	78	53.219	Heterocephalus_glaber_male
ENSAOCG00000021616	-	81	85.294	ENSHCOG00000012333	hnrnpc	91	85.199	Hippocampus_comes
ENSAOCG00000021616	-	82	79.545	ENSIPUG00000008666	zgc:55733	95	79.263	Ictalurus_punctatus
ENSAOCG00000021616	-	80	81.008	ENSIPUG00000011271	hnrnpc	98	80.088	Ictalurus_punctatus
ENSAOCG00000021616	-	70	55.804	ENSSTOG00000012583	RALYL	80	53.419	Ictidomys_tridecemlineatus
ENSAOCG00000021616	-	89	77.083	ENSKMAG00000011170	-	81	79.842	Kryptolebias_marmoratus
ENSAOCG00000021616	-	100	88.272	ENSKMAG00000018265	-	100	87.654	Kryptolebias_marmoratus
ENSAOCG00000021616	-	100	86.646	ENSLBEG00000006193	-	96	88.636	Labrus_bergylta
ENSAOCG00000021616	-	91	70.395	ENSLBEG00000024418	-	93	69.474	Labrus_bergylta
ENSAOCG00000021616	-	89	73.793	ENSLBEG00000006979	-	93	73.091	Labrus_bergylta
ENSAOCG00000021616	-	82	68.657	ENSLOCG00000002560	hnrnpc	88	69.112	Lepisosteus_oculatus
ENSAOCG00000021616	-	71	57.477	ENSMNEG00000033288	RALYL	78	55.856	Macaca_nemestrina
ENSAOCG00000021616	-	71	57.477	ENSMLEG00000038284	RALYL	78	55.856	Mandrillus_leucophaeus
ENSAOCG00000021616	-	83	93.633	ENSMAMG00000008033	-	100	90.432	Mastacembelus_armatus
ENSAOCG00000021616	-	78	84.585	ENSMAMG00000012236	-	84	80.237	Mastacembelus_armatus
ENSAOCG00000021616	-	100	89.506	ENSMZEG00005024249	-	100	89.815	Maylandia_zebra
ENSAOCG00000021616	-	78	82.609	ENSMZEG00005020460	-	87	78.599	Maylandia_zebra
ENSAOCG00000021616	-	71	54.867	ENSMAUG00000015149	Ralyl	78	52.991	Mesocricetus_auratus
ENSAOCG00000021616	-	70	57.277	ENSMICG00000005558	RALYL	80	75.949	Microcebus_murinus
ENSAOCG00000021616	-	70	55.357	ENSMOCG00000017371	Ralyl	78	52.991	Microtus_ochrogaster
ENSAOCG00000021616	-	82	83.650	ENSMMOG00000021465	-	88	82.937	Mola_mola
ENSAOCG00000021616	-	90	90.068	ENSMMOG00000019520	-	100	87.671	Mola_mola
ENSAOCG00000021616	-	83	90.189	ENSMALG00000014623	-	84	90.566	Monopterus_albus
ENSAOCG00000021616	-	79	77.647	ENSMALG00000007520	-	83	74.104	Monopterus_albus
ENSAOCG00000021616	-	71	54.425	ENSMUSG00000039717	Ralyl	93	74.684	Mus_musculus
ENSAOCG00000021616	-	70	56.696	ENSMPUG00000010724	RALYL	78	52.564	Mustela_putorius_furo
ENSAOCG00000021616	-	71	54.867	ENSNGAG00000013375	Ralyl	78	52.991	Nannospalax_galili
ENSAOCG00000021616	-	80	83.333	ENSNBRG00000004912	-	95	79.741	Neolamprologus_brichardi
ENSAOCG00000021616	-	100	89.815	ENSNBRG00000015676	-	100	90.741	Neolamprologus_brichardi
ENSAOCG00000021616	-	71	57.477	ENSNLEG00000002702	RALYL	74	55.856	Nomascus_leucogenys
ENSAOCG00000021616	-	60	50.259	ENSOPRG00000013650	-	100	46.569	Ochotona_princeps
ENSAOCG00000021616	-	71	54.667	ENSODEG00000001012	RALYL	78	53.648	Octodon_degus
ENSAOCG00000021616	-	100	89.815	ENSONIG00000018350	-	100	90.123	Oreochromis_niloticus
ENSAOCG00000021616	-	78	83.794	ENSONIG00000007859	-	90	81.992	Oreochromis_niloticus
ENSAOCG00000021616	-	78	74.118	ENSORLG00000009999	-	82	71.373	Oryzias_latipes
ENSAOCG00000021616	-	100	85.498	ENSORLG00000003144	-	100	85.714	Oryzias_latipes
ENSAOCG00000021616	-	78	73.725	ENSORLG00020018228	hnrnpc	82	70.980	Oryzias_latipes_hni
ENSAOCG00000021616	-	100	84.911	ENSORLG00015009460	-	100	85.207	Oryzias_latipes_hsok
ENSAOCG00000021616	-	78	74.118	ENSORLG00015019755	-	82	71.373	Oryzias_latipes_hsok
ENSAOCG00000021616	-	100	88.000	ENSOMEG00000022665	-	100	88.923	Oryzias_melastigma
ENSAOCG00000021616	-	78	75.686	ENSOMEG00000020488	-	81	72.941	Oryzias_melastigma
ENSAOCG00000021616	-	71	57.477	ENSPPAG00000038705	RALYL	78	55.856	Pan_paniscus
ENSAOCG00000021616	-	70	60.280	ENSPPRG00000018612	RALYL	78	55.804	Panthera_pardus
ENSAOCG00000021616	-	70	60.280	ENSPTIG00000020331	RALYL	78	55.804	Panthera_tigris_altaica
ENSAOCG00000021616	-	71	57.477	ENSPTRG00000020381	RALYL	78	55.856	Pan_troglodytes
ENSAOCG00000021616	-	71	57.477	ENSPANG00000029305	RALYL	78	55.856	Papio_anubis
ENSAOCG00000021616	-	81	77.903	ENSPKIG00000022837	-	96	78.095	Paramormyrops_kingsleyae
ENSAOCG00000021616	-	83	79.779	ENSPKIG00000008592	-	96	75.316	Paramormyrops_kingsleyae
ENSAOCG00000021616	-	70	55.804	ENSPSIG00000011135	RALYL	78	53.419	Pelodiscus_sinensis
ENSAOCG00000021616	-	99	79.392	ENSPMGG00000013144	-	99	75.676	Periophthalmus_magnuspinnatus
ENSAOCG00000021616	-	95	61.311	ENSPMGG00000017774	-	92	63.801	Periophthalmus_magnuspinnatus
ENSAOCG00000021616	-	71	54.867	ENSPEMG00000016447	Ralyl	78	52.991	Peromyscus_maniculatus_bairdii
ENSAOCG00000021616	-	71	53.744	ENSPMAG00000002407	RALYL	97	52.444	Petromyzon_marinus
ENSAOCG00000021616	-	100	88.199	ENSPFOG00000002643	-	100	87.578	Poecilia_formosa
ENSAOCG00000021616	-	87	75.265	ENSPFOG00000001583	-	82	76.772	Poecilia_formosa
ENSAOCG00000021616	-	87	73.404	ENSPLAG00000015305	-	82	74.704	Poecilia_latipinna
ENSAOCG00000021616	-	100	87.307	ENSPLAG00000000061	-	100	89.783	Poecilia_latipinna
ENSAOCG00000021616	-	87	76.761	ENSPMEG00000004802	-	82	76.772	Poecilia_mexicana
ENSAOCG00000021616	-	100	87.578	ENSPMEG00000016524	-	100	86.957	Poecilia_mexicana
ENSAOCG00000021616	-	83	91.698	ENSPREG00000001852	-	89	90.943	Poecilia_reticulata
ENSAOCG00000021616	-	78	77.559	ENSPREG00000007928	-	82	75.591	Poecilia_reticulata
ENSAOCG00000021616	-	70	48.325	ENSPPYG00000018710	-	68	71.569	Pongo_abelii
ENSAOCG00000021616	-	83	47.917	ENSPVAG00000010821	RALYL	78	52.991	Pteropus_vampyrus
ENSAOCG00000021616	-	99	83.784	ENSPNYG00000003747	-	90	92.884	Pundamilia_nyererei
ENSAOCG00000021616	-	80	83.721	ENSPNYG00000020293	-	86	80.632	Pundamilia_nyererei
ENSAOCG00000021616	-	76	82.379	ENSPNAG00000015686	hnrnpc	89	79.623	Pygocentrus_nattereri
ENSAOCG00000021616	-	82	75.093	ENSPNAG00000019200	zgc:55733	81	75.686	Pygocentrus_nattereri
ENSAOCG00000021616	-	71	57.477	ENSRROG00000023925	RALYL	82	74.074	Rhinopithecus_roxellana
ENSAOCG00000021616	-	87	76.552	ENSSFOG00015012924	-	80	96.203	Scleropages_formosus
ENSAOCG00000021616	-	83	77.491	ENSSFOG00015012015	-	86	83.111	Scleropages_formosus
ENSAOCG00000021616	-	100	86.154	ENSSMAG00000011147	-	96	87.138	Scophthalmus_maximus
ENSAOCG00000021616	-	78	80.237	ENSSMAG00000013592	-	95	74.675	Scophthalmus_maximus
ENSAOCG00000021616	-	100	86.997	ENSSDUG00000006730	-	100	86.687	Seriola_dumerili
ENSAOCG00000021616	-	87	80.851	ENSSDUG00000001723	-	90	81.295	Seriola_dumerili
ENSAOCG00000021616	-	85	82.117	ENSSLDG00000007454	-	82	83.794	Seriola_lalandi_dorsalis
ENSAOCG00000021616	-	83	90.226	ENSSLDG00000007474	-	92	89.474	Seriola_lalandi_dorsalis
ENSAOCG00000021616	-	100	95.342	ENSSPAG00000013996	-	100	94.410	Stegastes_partitus
ENSAOCG00000021616	-	86	82.079	ENSSPAG00000023204	-	89	83.032	Stegastes_partitus
ENSAOCG00000021616	-	73	53.846	ENSTGUG00000011689	RALYL	79	53.448	Taeniopygia_guttata
ENSAOCG00000021616	-	93	71.777	ENSTRUG00000020158	-	99	71.761	Takifugu_rubripes
ENSAOCG00000021616	-	79	80.385	ENSTNIG00000007427	-	83	80.078	Tetraodon_nigroviridis
ENSAOCG00000021616	-	79	80.709	ENSTNIG00000000334	-	93	78.599	Tetraodon_nigroviridis
ENSAOCG00000021616	-	71	49.107	ENSTBEG00000005551	RALYL	88	48.899	Tupaia_belangeri
ENSAOCG00000021616	-	70	54.338	ENSTTRG00000015762	RALYL	78	52.632	Tursiops_truncatus
ENSAOCG00000021616	-	70	53.991	ENSVPAG00000008501	RALYL	78	50.893	Vicugna_pacos
ENSAOCG00000021616	-	89	68.385	ENSXCOG00000006552	-	81	69.685	Xiphophorus_couchianus
ENSAOCG00000021616	-	52	90.184	ENSXCOG00000019434	-	69	88.957	Xiphophorus_couchianus
ENSAOCG00000021616	-	87	75.000	ENSXMAG00000009333	-	82	74.803	Xiphophorus_maculatus
ENSAOCG00000021616	-	83	91.698	ENSXMAG00000022849	-	86	90.943	Xiphophorus_maculatus