EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000022617 (Gene tree)
Gene ID: 111576462
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 8599 bases
Position: chrNXFZ01000848.1:1071-9669
Accession: 111576462
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000031146	PPR	PF01535.20	1.3e-13	1	2
ENSAOCP00000031146	PPR	PF01535.20	1.3e-13	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000026817	-	1980	XM_023282139	ENSAOCP00000031146	659 (aa)	XP_023137907	UPI000C300559

Gene Model

Click here to download ENSAOCG00000022617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000022617's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000022617	ptcd1	94	100.000	ENSAOCG00000020741	-	89	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000022617	ptcd1	81	48.029	ENSG00000248919	ATP5MF-PTCD1	82	45.367	Homo_sapiens
ENSAOCG00000022617	ptcd1	81	48.029	ENSG00000106246	PTCD1	88	45.367	Homo_sapiens
ENSAOCG00000022617	ptcd1	98	86.822	ENSAPOG00000010679	ptcd1	99	86.822	Acanthochromis_polyacanthus
ENSAOCG00000022617	ptcd1	92	46.334	ENSAMEG00000006224	-	83	46.334	Ailuropoda_melanoleuca
ENSAOCG00000022617	ptcd1	93	70.429	ENSACIG00000017861	ptcd1	91	70.429	Amphilophus_citrinellus
ENSAOCG00000022617	ptcd1	94	99.196	ENSAPEG00000022632	ptcd1	89	99.196	Amphiprion_percula
ENSAOCG00000022617	ptcd1	94	68.082	ENSATEG00000007016	ptcd1	88	68.396	Anabas_testudineus
ENSAOCG00000022617	ptcd1	81	47.772	ENSAPLG00000006862	-	89	47.260	Anas_platyrhynchos
ENSAOCG00000022617	ptcd1	83	47.727	ENSACAG00000012871	-	75	47.727	Anolis_carolinensis
ENSAOCG00000022617	ptcd1	81	48.233	ENSANAG00000035790	-	82	47.895	Aotus_nancymaae
ENSAOCG00000022617	ptcd1	94	69.340	ENSACLG00000002824	ptcd1	88	69.340	Astatotilapia_calliptera
ENSAOCG00000022617	ptcd1	84	51.010	ENSAMXG00000037292	ptcd1	87	51.347	Astyanax_mexicanus
ENSAOCG00000022617	ptcd1	86	46.723	ENSBTAG00000020440	-	75	46.293	Bos_taurus
ENSAOCG00000022617	ptcd1	81	48.485	ENSCJAG00000015815	-	80	48.142	Callithrix_jacchus
ENSAOCG00000022617	ptcd1	88	47.595	ENSCAFG00000015055	-	79	47.595	Canis_familiaris
ENSAOCG00000022617	ptcd1	88	47.682	ENSCAFG00020014480	-	79	47.595	Canis_lupus_dingo
ENSAOCG00000022617	ptcd1	86	47.966	ENSCHIG00000027000	-	83	48.136	Capra_hircus
ENSAOCG00000022617	ptcd1	81	48.566	ENSTSYG00000029495	-	86	46.066	Carlito_syrichta
ENSAOCG00000022617	ptcd1	86	46.411	ENSCAPG00000014660	-	90	46.411	Cavia_aperea
ENSAOCG00000022617	ptcd1	88	46.546	ENSCPOG00000001780	-	85	46.546	Cavia_porcellus
ENSAOCG00000022617	ptcd1	81	47.972	ENSCCAG00000034025	-	80	47.636	Cebus_capucinus
ENSAOCG00000022617	ptcd1	81	48.122	ENSCATG00000040859	-	88	45.280	Cercocebus_atys
ENSAOCG00000022617	ptcd1	86	46.578	ENSCLAG00000006354	-	84	46.656	Chinchilla_lanigera
ENSAOCG00000022617	ptcd1	81	48.214	ENSCSAG00000017794	-	93	44.914	Chlorocebus_sabaeus
ENSAOCG00000022617	ptcd1	81	46.416	ENSCPBG00000020866	-	78	46.416	Chrysemys_picta_bellii
ENSAOCG00000022617	ptcd1	75	30.077	ENSCING00000007717	-	87	30.077	Ciona_intestinalis
ENSAOCG00000022617	ptcd1	91	45.920	ENSCANG00000023441	-	88	45.920	Colobus_angolensis_palliatus
ENSAOCG00000022617	ptcd1	89	45.738	ENSCGRG00001023686	Ptcd1	86	45.990	Cricetulus_griseus_chok1gshd
ENSAOCG00000022617	ptcd1	87	45.910	ENSCGRG00000015031	Ptcd1	84	46.167	Cricetulus_griseus_crigri
ENSAOCG00000022617	ptcd1	94	57.543	ENSCSEG00000002378	ptcd1	88	58.009	Cynoglossus_semilaevis
ENSAOCG00000022617	ptcd1	94	66.987	ENSCVAG00000015826	ptcd1	88	66.987	Cyprinodon_variegatus
ENSAOCG00000022617	ptcd1	94	66.346	ENSCVAG00000003621	ptcd1	93	66.346	Cyprinodon_variegatus
ENSAOCG00000022617	ptcd1	82	53.014	ENSDARG00000076176	ptcd1	81	53.014	Danio_rerio
ENSAOCG00000022617	ptcd1	82	47.788	ENSDNOG00000009957	-	79	47.887	Dasypus_novemcinctus
ENSAOCG00000022617	ptcd1	81	47.865	ENSDORG00000000740	Ptcd1	83	46.897	Dipodomys_ordii
ENSAOCG00000022617	ptcd1	69	49.660	ENSEBUG00000014515	ptcd1	89	49.660	Eptatretus_burgeri
ENSAOCG00000022617	ptcd1	91	45.787	ENSEASG00005002480	-	88	46.264	Equus_asinus_asinus
ENSAOCG00000022617	ptcd1	91	45.597	ENSECAG00000016617	-	91	46.276	Equus_caballus
ENSAOCG00000022617	ptcd1	83	56.507	ENSELUG00000016517	ptcd1	79	56.507	Esox_lucius
ENSAOCG00000022617	ptcd1	87	47.088	ENSFCAG00000015069	-	84	47.430	Felis_catus
ENSAOCG00000022617	ptcd1	81	47.887	ENSFALG00000013803	-	84	46.393	Ficedula_albicollis
ENSAOCG00000022617	ptcd1	86	47.746	ENSFDAG00000006393	-	84	47.833	Fukomys_damarensis
ENSAOCG00000022617	ptcd1	72	70.711	ENSFHEG00000012491	ptcd1	83	70.711	Fundulus_heteroclitus
ENSAOCG00000022617	ptcd1	81	61.922	ENSGMOG00000007639	ptcd1	87	61.922	Gadus_morhua
ENSAOCG00000022617	ptcd1	81	46.410	ENSGALG00000004711	-	90	43.865	Gallus_gallus
ENSAOCG00000022617	ptcd1	93	64.309	ENSGAFG00000013175	ptcd1	87	64.309	Gambusia_affinis
ENSAOCG00000022617	ptcd1	84	71.048	ENSGACG00000016607	ptcd1	87	71.048	Gasterosteus_aculeatus
ENSAOCG00000022617	ptcd1	82	48.029	ENSGAGG00000021832	-	84	47.578	Gopherus_agassizii
ENSAOCG00000022617	ptcd1	81	47.491	ENSGGOG00000015123	-	88	44.888	Gorilla_gorilla
ENSAOCG00000022617	ptcd1	94	69.025	ENSHBUG00000018275	ptcd1	88	69.025	Haplochromis_burtoni
ENSAOCG00000022617	ptcd1	84	48.014	ENSHGLG00000017621	-	84	47.236	Heterocephalus_glaber_female
ENSAOCG00000022617	ptcd1	84	48.014	ENSHGLG00100007218	-	84	47.236	Heterocephalus_glaber_male
ENSAOCG00000022617	ptcd1	94	56.825	ENSHCOG00000010784	ptcd1	89	57.845	Hippocampus_comes
ENSAOCG00000022617	ptcd1	85	47.945	ENSSTOG00000001682	-	82	48.116	Ictidomys_tridecemlineatus
ENSAOCG00000022617	ptcd1	86	47.731	ENSJJAG00000000319	Ptcd1	85	47.475	Jaculus_jaculus
ENSAOCG00000022617	ptcd1	88	67.736	ENSKMAG00000008708	ptcd1	83	68.243	Kryptolebias_marmoratus
ENSAOCG00000022617	ptcd1	94	66.044	ENSLBEG00000008061	ptcd1	89	66.044	Labrus_bergylta
ENSAOCG00000022617	ptcd1	84	48.007	ENSLACG00000011172	ptcd1	81	48.180	Latimeria_chalumnae
ENSAOCG00000022617	ptcd1	81	52.870	ENSLOCG00000004833	ptcd1	87	52.527	Lepisosteus_oculatus
ENSAOCG00000022617	ptcd1	82	47.257	ENSLAFG00000002588	-	85	45.336	Loxodonta_africana
ENSAOCG00000022617	ptcd1	81	48.301	ENSMFAG00000041324	-	88	45.440	Macaca_fascicularis
ENSAOCG00000022617	ptcd1	81	48.301	ENSMMUG00000030408	-	88	45.440	Macaca_mulatta
ENSAOCG00000022617	ptcd1	81	48.301	ENSMNEG00000043786	-	88	45.440	Macaca_nemestrina
ENSAOCG00000022617	ptcd1	81	36.066	ENSMLEG00000031179	-	86	35.610	Mandrillus_leucophaeus
ENSAOCG00000022617	ptcd1	94	66.667	ENSMAMG00000007623	ptcd1	88	66.667	Mastacembelus_armatus
ENSAOCG00000022617	ptcd1	94	69.182	ENSMZEG00005012722	ptcd1	88	69.182	Maylandia_zebra
ENSAOCG00000022617	ptcd1	84	45.378	ENSMGAG00000004211	-	77	45.546	Meleagris_gallopavo
ENSAOCG00000022617	ptcd1	86	45.408	ENSMICG00000017428	-	84	45.408	Microcebus_murinus
ENSAOCG00000022617	ptcd1	94	68.809	ENSMMOG00000020243	ptcd1	86	73.656	Mola_mola
ENSAOCG00000022617	ptcd1	82	46.609	ENSMODG00000001350	-	78	46.609	Monodelphis_domestica
ENSAOCG00000022617	ptcd1	94	69.764	ENSMALG00000018442	ptcd1	88	69.764	Monopterus_albus
ENSAOCG00000022617	ptcd1	82	45.936	MGP_CAROLIEiJ_G0028011	Ptcd1	80	45.936	Mus_caroli
ENSAOCG00000022617	ptcd1	82	46.441	ENSMUSG00000029624	Ptcd1	80	46.441	Mus_musculus
ENSAOCG00000022617	ptcd1	89	44.839	MGP_PahariEiJ_G0024580	Ptcd1	88	44.839	Mus_pahari
ENSAOCG00000022617	ptcd1	82	46.195	MGP_SPRETEiJ_G0029012	Ptcd1	80	46.466	Mus_spretus
ENSAOCG00000022617	ptcd1	89	46.504	ENSMPUG00000016518	-	86	47.411	Mustela_putorius_furo
ENSAOCG00000022617	ptcd1	85	47.530	ENSMLUG00000010994	-	84	45.853	Myotis_lucifugus
ENSAOCG00000022617	ptcd1	94	68.388	ENSNBRG00000010079	ptcd1	92	68.388	Neolamprologus_brichardi
ENSAOCG00000022617	ptcd1	72	46.774	ENSNLEG00000011060	-	83	46.774	Nomascus_leucogenys
ENSAOCG00000022617	ptcd1	82	46.996	ENSMEUG00000006930	-	80	46.996	Notamacropus_eugenii
ENSAOCG00000022617	ptcd1	74	51.095	ENSOPRG00000013647	-	74	50.685	Ochotona_princeps
ENSAOCG00000022617	ptcd1	82	70.932	ENSONIG00000003168	ptcd1	90	70.932	Oreochromis_niloticus
ENSAOCG00000022617	ptcd1	94	45.008	ENSOANG00000007728	-	80	45.860	Ornithorhynchus_anatinus
ENSAOCG00000022617	ptcd1	86	46.801	ENSOCUG00000010584	-	82	46.801	Oryctolagus_cuniculus
ENSAOCG00000022617	ptcd1	94	64.070	ENSORLG00000009275	ptcd1	91	64.070	Oryzias_latipes
ENSAOCG00000022617	ptcd1	94	64.490	ENSORLG00020000988	ptcd1	91	64.490	Oryzias_latipes_hni
ENSAOCG00000022617	ptcd1	94	64.013	ENSORLG00015010557	ptcd1	91	64.013	Oryzias_latipes_hsok
ENSAOCG00000022617	ptcd1	94	65.550	ENSOMEG00000020627	ptcd1	92	65.550	Oryzias_melastigma
ENSAOCG00000022617	ptcd1	81	46.181	ENSOGAG00000010877	-	80	45.855	Otolemur_garnettii
ENSAOCG00000022617	ptcd1	86	44.501	ENSOARG00000018676	-	84	44.670	Ovis_aries
ENSAOCG00000022617	ptcd1	81	48.029	ENSPPAG00000036024	-	88	45.455	Pan_paniscus
ENSAOCG00000022617	ptcd1	88	47.282	ENSPPRG00000003478	-	86	47.282	Panthera_pardus
ENSAOCG00000022617	ptcd1	81	48.208	ENSPTRG00000019452	-	88	45.527	Pan_troglodytes
ENSAOCG00000022617	ptcd1	81	48.479	ENSPANG00000016730	-	88	45.600	Papio_anubis
ENSAOCG00000022617	ptcd1	81	51.712	ENSPKIG00000014215	ptcd1	80	51.892	Paramormyrops_kingsleyae
ENSAOCG00000022617	ptcd1	81	46.953	ENSPSIG00000011184	-	93	46.953	Pelodiscus_sinensis
ENSAOCG00000022617	ptcd1	73	38.235	ENSPMAG00000009667	ptcd1	96	38.235	Petromyzon_marinus
ENSAOCG00000022617	ptcd1	82	45.783	ENSPCIG00000024778	-	78	45.783	Phascolarctos_cinereus
ENSAOCG00000022617	ptcd1	93	63.724	ENSPFOG00000004458	ptcd1	87	64.526	Poecilia_formosa
ENSAOCG00000022617	ptcd1	93	63.023	ENSPLAG00000011051	ptcd1	87	63.826	Poecilia_latipinna
ENSAOCG00000022617	ptcd1	93	64.687	ENSPMEG00000020547	ptcd1	87	64.687	Poecilia_mexicana
ENSAOCG00000022617	ptcd1	93	62.862	ENSPREG00000000059	ptcd1	88	62.862	Poecilia_reticulata
ENSAOCG00000022617	ptcd1	86	46.154	ENSPPYG00000017377	-	89	46.154	Pongo_abelii
ENSAOCG00000022617	ptcd1	71	55.556	ENSPCAG00000001852	-	76	55.556	Procavia_capensis
ENSAOCG00000022617	ptcd1	81	47.653	ENSPCOG00000018596	-	82	46.287	Propithecus_coquereli
ENSAOCG00000022617	ptcd1	60	52.131	ENSPVAG00000007529	-	63	52.131	Pteropus_vampyrus
ENSAOCG00000022617	ptcd1	94	68.868	ENSPNYG00000019993	ptcd1	88	68.868	Pundamilia_nyererei
ENSAOCG00000022617	ptcd1	89	50.654	ENSPNAG00000014931	ptcd1	88	51.634	Pygocentrus_nattereri
ENSAOCG00000022617	ptcd1	85	46.299	ENSRNOG00000000987	Ptcd1	84	46.299	Rattus_norvegicus
ENSAOCG00000022617	ptcd1	91	45.425	ENSRBIG00000043393	-	88	45.425	Rhinopithecus_bieti
ENSAOCG00000022617	ptcd1	91	45.847	ENSRROG00000036420	-	88	45.847	Rhinopithecus_roxellana
ENSAOCG00000022617	ptcd1	81	48.307	ENSSBOG00000024114	-	80	47.965	Saimiri_boliviensis_boliviensis
ENSAOCG00000022617	ptcd1	82	48.214	ENSSHAG00000011376	-	85	48.214	Sarcophilus_harrisii
ENSAOCG00000022617	ptcd1	85	52.048	ENSSFOG00015007909	ptcd1	79	52.218	Scleropages_formosus
ENSAOCG00000022617	ptcd1	82	66.486	ENSSMAG00000000218	ptcd1	87	66.847	Scophthalmus_maximus
ENSAOCG00000022617	ptcd1	94	68.896	ENSSDUG00000015671	ptcd1	93	68.896	Seriola_dumerili
ENSAOCG00000022617	ptcd1	94	68.740	ENSSLDG00000014261	ptcd1	91	68.740	Seriola_lalandi_dorsalis
ENSAOCG00000022617	ptcd1	86	45.915	ENSSPUG00000003540	-	82	45.915	Sphenodon_punctatus
ENSAOCG00000022617	ptcd1	94	77.725	ENSSPAG00000011049	ptcd1	88	77.883	Stegastes_partitus
ENSAOCG00000022617	ptcd1	81	49.551	ENSSSCG00000007622	-	90	47.264	Sus_scrofa
ENSAOCG00000022617	ptcd1	82	46.953	ENSTGUG00000007563	-	91	46.953	Taeniopygia_guttata
ENSAOCG00000022617	ptcd1	94	64.263	ENSTRUG00000013471	ptcd1	88	64.263	Takifugu_rubripes
ENSAOCG00000022617	ptcd1	92	64.812	ENSTNIG00000008271	ptcd1	89	64.812	Tetraodon_nigroviridis
ENSAOCG00000022617	ptcd1	85	46.587	ENSTBEG00000011021	-	83	46.587	Tupaia_belangeri
ENSAOCG00000022617	ptcd1	83	47.232	ENSTTRG00000003006	-	81	47.232	Tursiops_truncatus
ENSAOCG00000022617	ptcd1	84	47.314	ENSUAMG00000008049	-	86	46.179	Ursus_americanus
ENSAOCG00000022617	ptcd1	88	48.093	ENSVVUG00000008836	-	85	48.093	Vulpes_vulpes
ENSAOCG00000022617	ptcd1	92	44.657	ENSXETG00000009891	ptcd1	88	44.657	Xenopus_tropicalis
ENSAOCG00000022617	ptcd1	93	64.677	ENSXMAG00000015540	ptcd1	87	65.000	Xiphophorus_maculatus