EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000022839 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 12146 bases
Position: chrNXFZ01000844.1:153978-166123
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000031227	ResIII	PF04851.15	1.9e-10	1	1
ENSAOCP00000031242	ResIII	PF04851.15	2.1e-09	1	1
ENSAOCP00000031227	DEAD	PF00270.29	7.3e-26	1	1
ENSAOCP00000031242	DEAD	PF00270.29	1.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000027021	-	2574	-	ENSAOCP00000031242	858 (aa)	-	-
ENSAOCT00000026992	-	2481	-	ENSAOCP00000031227	826 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000022839's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000022839's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000022839	hfm1	85	32.159	ENSAOCG00000005106	ascc3	64	32.159
ENSAOCG00000022839	hfm1	86	31.967	ENSAOCG00000024593	snrnp200	70	32.465

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000022839	hfm1	100	65.811	ENSG00000162669	HFM1	64	65.811	Homo_sapiens
ENSAOCG00000022839	hfm1	100	95.006	ENSAPOG00000005304	hfm1	100	95.006	Acanthochromis_polyacanthus
ENSAOCG00000022839	hfm1	96	69.105	ENSAMEG00000000432	HFM1	57	67.515	Ailuropoda_melanoleuca
ENSAOCG00000022839	hfm1	96	89.001	ENSACIG00000021553	hfm1	73	89.001	Amphilophus_citrinellus
ENSAOCG00000022839	hfm1	100	98.836	ENSAPEG00000014316	hfm1	100	98.836	Amphiprion_percula
ENSAOCG00000022839	hfm1	96	91.414	ENSATEG00000019181	hfm1	67	91.207	Anabas_testudineus
ENSAOCG00000022839	hfm1	96	69.773	ENSAPLG00000013639	HFM1	59	66.746	Anas_platyrhynchos
ENSAOCG00000022839	hfm1	100	64.720	ENSANAG00000029513	HFM1	65	64.720	Aotus_nancymaae
ENSAOCG00000022839	hfm1	99	83.431	ENSACLG00000009033	hfm1	100	83.431	Astatotilapia_calliptera
ENSAOCG00000022839	hfm1	99	76.634	ENSAMXG00000006108	hfm1	61	76.634	Astyanax_mexicanus
ENSAOCG00000022839	hfm1	96	69.357	ENSBTAG00000020856	HFM1	58	66.906	Bos_taurus
ENSAOCG00000022839	hfm1	100	65.380	ENSCJAG00000001843	HFM1	64	65.380	Callithrix_jacchus
ENSAOCG00000022839	hfm1	96	68.561	ENSCAFG00000020187	HFM1	58	65.755	Canis_familiaris
ENSAOCG00000022839	hfm1	100	66.826	ENSTSYG00000014250	HFM1	62	66.826	Carlito_syrichta
ENSAOCG00000022839	hfm1	96	67.803	ENSCPOG00000007421	HFM1	60	65.588	Cavia_porcellus
ENSAOCG00000022839	hfm1	96	68.348	ENSCCAG00000033206	HFM1	60	65.146	Cebus_capucinus
ENSAOCG00000022839	hfm1	100	65.461	ENSCATG00000030987	HFM1	64	65.461	Cercocebus_atys
ENSAOCG00000022839	hfm1	96	67.677	ENSCLAG00000005173	HFM1	56	66.223	Chinchilla_lanigera
ENSAOCG00000022839	hfm1	84	52.222	ENSCSAVG00000005094	-	100	52.222	Ciona_savignyi
ENSAOCG00000022839	hfm1	96	64.831	ENSCGRG00001016995	Hfm1	56	64.831	Cricetulus_griseus_chok1gshd
ENSAOCG00000022839	hfm1	96	67.213	ENSCGRG00000017181	Hfm1	58	64.988	Cricetulus_griseus_crigri
ENSAOCG00000022839	hfm1	96	84.975	ENSCSEG00000017659	hfm1	76	82.625	Cynoglossus_semilaevis
ENSAOCG00000022839	hfm1	86	84.151	ENSCVAG00000005075	hfm1	86	84.151	Cyprinodon_variegatus
ENSAOCG00000022839	hfm1	100	74.632	ENSDARG00000104288	hfm1	81	74.632	Danio_rerio
ENSAOCG00000022839	hfm1	97	68.664	ENSDNOG00000004776	HFM1	61	64.061	Dasypus_novemcinctus
ENSAOCG00000022839	hfm1	96	66.296	ENSDORG00000014661	Hfm1	56	66.296	Dipodomys_ordii
ENSAOCG00000022839	hfm1	50	61.098	ENSEBUG00000006133	-	91	61.098	Eptatretus_burgeri
ENSAOCG00000022839	hfm1	96	68.892	ENSEASG00005015424	HFM1	79	68.892	Equus_asinus_asinus
ENSAOCG00000022839	hfm1	96	68.852	ENSECAG00000024039	HFM1	57	66.033	Equus_caballus
ENSAOCG00000022839	hfm1	100	81.141	ENSELUG00000018944	hfm1	98	81.141	Esox_lucius
ENSAOCG00000022839	hfm1	96	68.852	ENSFCAG00000029116	HFM1	58	66.033	Felis_catus
ENSAOCG00000022839	hfm1	96	69.647	ENSFALG00000001781	HFM1	58	66.906	Ficedula_albicollis
ENSAOCG00000022839	hfm1	96	68.056	ENSFDAG00000020816	HFM1	56	65.827	Fukomys_damarensis
ENSAOCG00000022839	hfm1	96	76.671	ENSGMOG00000017436	hfm1	85	74.757	Gadus_morhua
ENSAOCG00000022839	hfm1	99	84.204	ENSGAFG00000018093	hfm1	100	84.204	Gambusia_affinis
ENSAOCG00000022839	hfm1	96	83.712	ENSGACG00000015686	hfm1	85	80.947	Gasterosteus_aculeatus
ENSAOCG00000022839	hfm1	100	65.811	ENSGGOG00000038524	HFM1	64	65.811	Gorilla_gorilla
ENSAOCG00000022839	hfm1	96	87.121	ENSHBUG00000007309	hfm1	79	84.727	Haplochromis_burtoni
ENSAOCG00000022839	hfm1	99	80.071	ENSHCOG00000019632	hfm1	100	80.071	Hippocampus_comes
ENSAOCG00000022839	hfm1	99	75.115	ENSIPUG00000017020	hfm1	98	75.115	Ictalurus_punctatus
ENSAOCG00000022839	hfm1	96	67.465	ENSJJAG00000017198	Hfm1	61	64.177	Jaculus_jaculus
ENSAOCG00000022839	hfm1	96	85.232	ENSKMAG00000002282	hfm1	84	83.843	Kryptolebias_marmoratus
ENSAOCG00000022839	hfm1	100	84.732	ENSLBEG00000006759	hfm1	99	84.732	Labrus_bergylta
ENSAOCG00000022839	hfm1	96	70.463	ENSLACG00000010698	HFM1	79	68.750	Latimeria_chalumnae
ENSAOCG00000022839	hfm1	96	76.071	ENSLOCG00000004931	hfm1	77	73.022	Lepisosteus_oculatus
ENSAOCG00000022839	hfm1	78	70.788	ENSLAFG00000015903	-	91	67.061	Loxodonta_africana
ENSAOCG00000022839	hfm1	100	62.998	ENSMFAG00000003649	HFM1	64	62.998	Macaca_fascicularis
ENSAOCG00000022839	hfm1	100	65.228	ENSMMUG00000006819	HFM1	64	65.228	Macaca_mulatta
ENSAOCG00000022839	hfm1	99	84.750	ENSMAMG00000004623	hfm1	100	84.750	Mastacembelus_armatus
ENSAOCG00000022839	hfm1	99	83.431	ENSMZEG00005004679	hfm1	100	83.431	Maylandia_zebra
ENSAOCG00000022839	hfm1	91	68.575	ENSMGAG00000008437	HFM1	93	68.575	Meleagris_gallopavo
ENSAOCG00000022839	hfm1	100	64.826	ENSMAUG00000018858	Hfm1	62	64.826	Mesocricetus_auratus
ENSAOCG00000022839	hfm1	100	64.685	ENSMICG00000037935	HFM1	64	64.685	Microcebus_murinus
ENSAOCG00000022839	hfm1	96	67.424	ENSMOCG00000014812	Hfm1	58	65.186	Microtus_ochrogaster
ENSAOCG00000022839	hfm1	100	88.065	ENSMMOG00000006148	hfm1	99	88.065	Mola_mola
ENSAOCG00000022839	hfm1	100	88.605	ENSMALG00000002401	hfm1	100	88.605	Monopterus_albus
ENSAOCG00000022839	hfm1	88	74.737	MGP_CAROLIEiJ_G0027496	Hfm1	50	74.737	Mus_caroli
ENSAOCG00000022839	hfm1	96	67.424	ENSMUSG00000043410	Hfm1	58	64.826	Mus_musculus
ENSAOCG00000022839	hfm1	96	67.298	MGP_PahariEiJ_G0017268	Hfm1	58	64.826	Mus_pahari
ENSAOCG00000022839	hfm1	96	67.929	MGP_SPRETEiJ_G0028495	Hfm1	58	65.306	Mus_spretus
ENSAOCG00000022839	hfm1	96	68.600	ENSMPUG00000004594	HFM1	57	65.914	Mustela_putorius_furo
ENSAOCG00000022839	hfm1	96	68.474	ENSMLUG00000010200	HFM1	58	66.187	Myotis_lucifugus
ENSAOCG00000022839	hfm1	99	83.431	ENSNBRG00000002910	hfm1	100	83.431	Neolamprologus_brichardi
ENSAOCG00000022839	hfm1	100	64.486	ENSNLEG00000010285	HFM1	63	64.486	Nomascus_leucogenys
ENSAOCG00000022839	hfm1	86	66.667	ENSMEUG00000015788	HFM1	52	67.532	Notamacropus_eugenii
ENSAOCG00000022839	hfm1	96	62.169	ENSOPRG00000013916	HFM1	58	61.151	Ochotona_princeps
ENSAOCG00000022839	hfm1	96	88.384	ENSONIG00000010590	hfm1	76	88.384	Oreochromis_niloticus
ENSAOCG00000022839	hfm1	96	81.061	ENSORLG00000026844	hfm1	100	84.331	Oryzias_latipes
ENSAOCG00000022839	hfm1	89	84.946	ENSORLG00020002951	hfm1	70	71.325	Oryzias_latipes_hni
ENSAOCG00000022839	hfm1	99	80.505	ENSOMEG00000016474	hfm1	62	80.505	Oryzias_melastigma
ENSAOCG00000022839	hfm1	100	66.108	ENSOGAG00000032369	HFM1	68	66.108	Otolemur_garnettii
ENSAOCG00000022839	hfm1	96	69.105	ENSOARG00000015812	HFM1	58	66.667	Ovis_aries
ENSAOCG00000022839	hfm1	100	66.044	ENSPPAG00000024582	HFM1	69	66.044	Pan_paniscus
ENSAOCG00000022839	hfm1	96	68.852	ENSPPRG00000003270	HFM1	58	66.033	Panthera_pardus
ENSAOCG00000022839	hfm1	96	68.979	ENSPTIG00000018881	HFM1	58	66.033	Panthera_tigris_altaica
ENSAOCG00000022839	hfm1	100	66.121	ENSPTRG00000000948	HFM1	63	66.121	Pan_troglodytes
ENSAOCG00000022839	hfm1	100	65.228	ENSPANG00000009838	HFM1	64	65.228	Papio_anubis
ENSAOCG00000022839	hfm1	96	74.968	ENSPKIG00000003810	hfm1	99	72.047	Paramormyrops_kingsleyae
ENSAOCG00000022839	hfm1	96	79.193	ENSPMGG00000011059	hfm1	99	82.058	Periophthalmus_magnuspinnatus
ENSAOCG00000022839	hfm1	96	67.172	ENSPEMG00000022852	Hfm1	58	64.946	Peromyscus_maniculatus_bairdii
ENSAOCG00000022839	hfm1	96	68.679	ENSPCIG00000014233	HFM1	57	66.388	Phascolarctos_cinereus
ENSAOCG00000022839	hfm1	96	85.480	ENSPFOG00000017194	hfm1	79	82.545	Poecilia_formosa
ENSAOCG00000022839	hfm1	96	85.354	ENSPLAG00000000571	hfm1	75	82.446	Poecilia_latipinna
ENSAOCG00000022839	hfm1	96	85.606	ENSPMEG00000019475	hfm1	76	82.688	Poecilia_mexicana
ENSAOCG00000022839	hfm1	99	83.353	ENSPREG00000007803	hfm1	100	83.353	Poecilia_reticulata
ENSAOCG00000022839	hfm1	100	65.811	ENSPPYG00000001163	HFM1	64	65.811	Pongo_abelii
ENSAOCG00000022839	hfm1	96	62.169	ENSPVAG00000009713	HFM1	61	60.327	Pteropus_vampyrus
ENSAOCG00000022839	hfm1	99	83.333	ENSPNYG00000001795	hfm1	100	83.333	Pundamilia_nyererei
ENSAOCG00000022839	hfm1	99	78.750	ENSPNAG00000010865	hfm1	88	78.750	Pygocentrus_nattereri
ENSAOCG00000022839	hfm1	100	64.946	ENSRNOG00000023299	Hfm1	62	64.946	Rattus_norvegicus
ENSAOCG00000022839	hfm1	100	66.152	ENSRROG00000045569	HFM1	63	66.152	Rhinopithecus_roxellana
ENSAOCG00000022839	hfm1	100	66.307	ENSSBOG00000027456	HFM1	59	66.307	Saimiri_boliviensis_boliviensis
ENSAOCG00000022839	hfm1	69	69.896	ENSSHAG00000014616	-	66	69.896	Sarcophilus_harrisii
ENSAOCG00000022839	hfm1	100	75.000	ENSSFOG00015020129	hfm1	59	75.000	Scleropages_formosus
ENSAOCG00000022839	hfm1	96	89.698	ENSSMAG00000006907	hfm1	85	84.041	Scophthalmus_maximus
ENSAOCG00000022839	hfm1	100	89.872	ENSSDUG00000011424	hfm1	100	89.872	Seriola_dumerili
ENSAOCG00000022839	hfm1	100	88.851	ENSSLDG00000016386	hfm1	100	88.851	Seriola_lalandi_dorsalis
ENSAOCG00000022839	hfm1	100	93.364	ENSSPAG00000001023	hfm1	100	93.364	Stegastes_partitus
ENSAOCG00000022839	hfm1	96	69.357	ENSSSCG00000006912	HFM1	61	67.146	Sus_scrofa
ENSAOCG00000022839	hfm1	96	69.270	ENSTGUG00000006172	HFM1	86	67.110	Taeniopygia_guttata
ENSAOCG00000022839	hfm1	55	81.395	ENSTNIG00000006962	hfm1	97	81.395	Tetraodon_nigroviridis
ENSAOCG00000022839	hfm1	96	68.979	ENSTTRG00000013933	HFM1	59	66.427	Tursiops_truncatus
ENSAOCG00000022839	hfm1	96	66.583	ENSVPAG00000011331	HFM1	58	64.269	Vicugna_pacos
ENSAOCG00000022839	hfm1	96	68.640	ENSVVUG00000020760	HFM1	79	68.640	Vulpes_vulpes
ENSAOCG00000022839	hfm1	99	83.199	ENSXMAG00000004178	hfm1	100	83.199	Xiphophorus_maculatus