EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000023744 (Gene tree)
Gene ID: 111568522
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 12270 bases
Position: chrNXFZ01002190.1:100993-113262
Accession: 111568522
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000018548	DND1_DSRM	PF14709.7	9e-26	1	1
ENSAOCP00000018548	RRM_1	PF00076.22	3.2e-41	1	3
ENSAOCP00000018548	RRM_1	PF00076.22	3.2e-41	2	3
ENSAOCP00000018548	RRM_1	PF00076.22	3.2e-41	3	3
ENSAOCP00000018541	RRM_1	PF00076.22	7.9e-39	1	3
ENSAOCP00000018541	RRM_1	PF00076.22	7.9e-39	2	3
ENSAOCP00000018541	RRM_1	PF00076.22	7.9e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000033183	-	1767	XM_023270205	ENSAOCP00000018548	588 (aa)	XP_023125973	UPI000C309F50
ENSAOCT00000033179	-	1083	-	ENSAOCP00000018541	360 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000023744's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000023744's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000023744	a1cf	87	64.912	ENSAOCG00000001892	-	79	64.912
ENSAOCG00000023744	a1cf	81	53.925	ENSAOCG00000023948	hnrnpr	65	44.418
ENSAOCG00000023744	a1cf	56	32.836	ENSAOCG00000009051	dnd1	56	31.707
ENSAOCG00000023744	a1cf	81	54.949	ENSAOCG00000018281	syncripl	63	49.855
ENSAOCG00000023744	a1cf	87	70.701	ENSAOCG00000022245	rbm47	80	51.460

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000023744	a1cf	96	84.348	ENSG00000148584	A1CF	100	88.119	Homo_sapiens
ENSAOCG00000023744	a1cf	100	94.898	ENSAPOG00000008259	a1cf	100	94.898	Acanthochromis_polyacanthus
ENSAOCG00000023744	a1cf	96	83.478	ENSAMEG00000000523	A1CF	100	73.892	Ailuropoda_melanoleuca
ENSAOCG00000023744	a1cf	93	93.433	ENSACIG00000008632	a1cf	100	86.656	Amphilophus_citrinellus
ENSAOCG00000023744	a1cf	100	98.490	ENSAPEG00000009537	a1cf	100	98.490	Amphiprion_percula
ENSAOCG00000023744	a1cf	100	89.701	ENSATEG00000013720	a1cf	100	88.538	Anabas_testudineus
ENSAOCG00000023744	a1cf	96	84.348	ENSAPLG00000002964	A1CF	100	73.563	Anas_platyrhynchos
ENSAOCG00000023744	a1cf	96	81.159	ENSACAG00000015269	A1CF	100	74.167	Anolis_carolinensis
ENSAOCG00000023744	a1cf	96	84.638	ENSANAG00000019974	A1CF	100	75.581	Aotus_nancymaae
ENSAOCG00000023744	a1cf	97	90.313	ENSACLG00000017428	a1cf	100	86.723	Astatotilapia_calliptera
ENSAOCG00000023744	a1cf	100	74.513	ENSAMXG00000018180	a1cf	100	74.351	Astyanax_mexicanus
ENSAOCG00000023744	a1cf	96	84.058	ENSBTAG00000021195	A1CF	97	78.318	Bos_taurus
ENSAOCG00000023744	a1cf	96	84.638	ENSCJAG00000005045	A1CF	100	74.426	Callithrix_jacchus
ENSAOCG00000023744	a1cf	96	83.188	ENSCAFG00000015581	A1CF	100	73.520	Canis_familiaris
ENSAOCG00000023744	a1cf	96	83.188	ENSCAFG00020026421	A1CF	98	83.333	Canis_lupus_dingo
ENSAOCG00000023744	a1cf	96	84.348	ENSCHIG00000020411	A1CF	100	74.632	Capra_hircus
ENSAOCG00000023744	a1cf	88	84.953	ENSTSYG00000001755	A1CF	100	75.309	Carlito_syrichta
ENSAOCG00000023744	a1cf	100	74.344	ENSCAPG00000017386	A1CF	100	73.761	Cavia_aperea
ENSAOCG00000023744	a1cf	96	83.478	ENSCPOG00000009807	A1CF	100	73.607	Cavia_porcellus
ENSAOCG00000023744	a1cf	96	84.638	ENSCCAG00000018168	A1CF	100	74.220	Cebus_capucinus
ENSAOCG00000023744	a1cf	96	84.348	ENSCATG00000043715	A1CF	100	75.208	Cercocebus_atys
ENSAOCG00000023744	a1cf	95	83.430	ENSCLAG00000010424	A1CF	100	73.977	Chinchilla_lanigera
ENSAOCG00000023744	a1cf	96	84.638	ENSCSAG00000007032	A1CF	100	74.220	Chlorocebus_sabaeus
ENSAOCG00000023744	a1cf	94	79.130	ENSCHOG00000009089	A1CF	98	71.692	Choloepus_hoffmanni
ENSAOCG00000023744	a1cf	96	83.478	ENSCPBG00000026464	A1CF	100	74.056	Chrysemys_picta_bellii
ENSAOCG00000023744	a1cf	96	84.638	ENSCANG00000038032	A1CF	100	74.220	Colobus_angolensis_palliatus
ENSAOCG00000023744	a1cf	93	85.030	ENSCGRG00001017413	A1cf	100	73.486	Cricetulus_griseus_chok1gshd
ENSAOCG00000023744	a1cf	93	85.030	ENSCGRG00000017332	A1cf	100	72.995	Cricetulus_griseus_crigri
ENSAOCG00000023744	a1cf	100	83.687	ENSCSEG00000002361	a1cf	100	83.199	Cynoglossus_semilaevis
ENSAOCG00000023744	a1cf	100	88.538	ENSCVAG00000010520	a1cf	100	88.870	Cyprinodon_variegatus
ENSAOCG00000023744	a1cf	94	88.462	ENSDARG00000002968	a1cf	100	80.905	Danio_rerio
ENSAOCG00000023744	a1cf	96	83.188	ENSDNOG00000002829	A1CF	100	73.607	Dasypus_novemcinctus
ENSAOCG00000023744	a1cf	81	84.058	ENSETEG00000012527	A1CF	81	84.058	Echinops_telfairi
ENSAOCG00000023744	a1cf	93	86.228	ENSEASG00005012924	A1CF	100	74.062	Equus_asinus_asinus
ENSAOCG00000023744	a1cf	93	85.928	ENSECAG00000010424	A1CF	100	73.736	Equus_caballus
ENSAOCG00000023744	a1cf	76	73.358	ENSEEUG00000000013	A1CF	97	67.105	Erinaceus_europaeus
ENSAOCG00000023744	a1cf	96	87.246	ENSELUG00000003159	a1cf	100	78.818	Esox_lucius
ENSAOCG00000023744	a1cf	96	83.478	ENSFCAG00000011179	A1CF	100	74.709	Felis_catus
ENSAOCG00000023744	a1cf	91	87.538	ENSFALG00000013183	A1CF	100	76.206	Ficedula_albicollis
ENSAOCG00000023744	a1cf	96	84.058	ENSFDAG00000019371	A1CF	100	74.295	Fukomys_damarensis
ENSAOCG00000023744	a1cf	100	81.561	ENSFHEG00000019652	a1cf	96	90.625	Fundulus_heteroclitus
ENSAOCG00000023744	a1cf	96	84.104	ENSGMOG00000018943	a1cf	100	79.070	Gadus_morhua
ENSAOCG00000023744	a1cf	86	85.897	ENSGALG00000003765	A1CF	96	73.958	Gallus_gallus
ENSAOCG00000023744	a1cf	97	89.744	ENSGAFG00000014868	a1cf	100	80.629	Gambusia_affinis
ENSAOCG00000023744	a1cf	100	84.477	ENSGACG00000010241	a1cf	100	83.660	Gasterosteus_aculeatus
ENSAOCG00000023744	a1cf	91	81.707	ENSGAGG00000016508	A1CF	98	72.774	Gopherus_agassizii
ENSAOCG00000023744	a1cf	96	84.348	ENSGGOG00000009670	A1CF	100	73.934	Gorilla_gorilla
ENSAOCG00000023744	a1cf	97	90.598	ENSHBUG00000021959	a1cf	100	86.820	Haplochromis_burtoni
ENSAOCG00000023744	a1cf	96	83.478	ENSHGLG00000008955	A1CF	100	73.486	Heterocephalus_glaber_female
ENSAOCG00000023744	a1cf	96	82.319	ENSHGLG00100000518	A1CF	100	72.831	Heterocephalus_glaber_male
ENSAOCG00000023744	a1cf	93	84.257	ENSHCOG00000017669	a1cf	100	76.423	Hippocampus_comes
ENSAOCG00000023744	a1cf	98	85.593	ENSIPUG00000010367	a1cf	95	83.210	Ictalurus_punctatus
ENSAOCG00000023744	a1cf	100	86.667	ENSKMAG00000006568	a1cf	100	86.829	Kryptolebias_marmoratus
ENSAOCG00000023744	a1cf	97	90.883	ENSLBEG00000020994	a1cf	99	87.234	Labrus_bergylta
ENSAOCG00000023744	a1cf	91	89.058	ENSLACG00000008061	A1CF	100	77.537	Latimeria_chalumnae
ENSAOCG00000023744	a1cf	96	88.116	ENSLOCG00000006302	a1cf	100	78.654	Lepisosteus_oculatus
ENSAOCG00000023744	a1cf	96	82.319	ENSLAFG00000015462	A1CF	100	74.304	Loxodonta_africana
ENSAOCG00000023744	a1cf	96	84.638	ENSMFAG00000035948	A1CF	100	75.208	Macaca_fascicularis
ENSAOCG00000023744	a1cf	96	84.638	ENSMMUG00000007077	A1CF	100	75.208	Macaca_mulatta
ENSAOCG00000023744	a1cf	96	84.348	ENSMNEG00000031454	A1CF	100	75.042	Macaca_nemestrina
ENSAOCG00000023744	a1cf	96	84.348	ENSMLEG00000037223	A1CF	100	74.220	Mandrillus_leucophaeus
ENSAOCG00000023744	a1cf	100	86.755	ENSMAMG00000010402	a1cf	100	86.589	Mastacembelus_armatus
ENSAOCG00000023744	a1cf	97	90.313	ENSMZEG00005013245	a1cf	100	83.940	Maylandia_zebra
ENSAOCG00000023744	a1cf	91	86.364	ENSMGAG00000001507	A1CF	100	73.770	Meleagris_gallopavo
ENSAOCG00000023744	a1cf	93	84.431	ENSMAUG00000007422	A1cf	100	73.159	Mesocricetus_auratus
ENSAOCG00000023744	a1cf	96	83.188	ENSMICG00000003377	A1CF	100	75.083	Microcebus_murinus
ENSAOCG00000023744	a1cf	93	85.629	ENSMOCG00000021536	A1cf	100	73.977	Microtus_ochrogaster
ENSAOCG00000023744	a1cf	100	78.041	ENSMMOG00000009422	a1cf	100	78.885	Mola_mola
ENSAOCG00000023744	a1cf	96	82.609	ENSMODG00000016478	A1CF	99	77.132	Monodelphis_domestica
ENSAOCG00000023744	a1cf	93	92.239	ENSMALG00000012992	a1cf	100	81.081	Monopterus_albus
ENSAOCG00000023744	a1cf	93	85.030	MGP_CAROLIEiJ_G0022873	A1cf	100	73.964	Mus_caroli
ENSAOCG00000023744	a1cf	93	85.030	ENSMUSG00000052595	A1cf	99	83.333	Mus_musculus
ENSAOCG00000023744	a1cf	93	84.132	MGP_PahariEiJ_G0014366	A1cf	100	73.134	Mus_pahari
ENSAOCG00000023744	a1cf	93	84.384	MGP_SPRETEiJ_G0023792	A1cf	100	74.043	Mus_spretus
ENSAOCG00000023744	a1cf	96	75.072	ENSMPUG00000016971	A1CF	100	68.801	Mustela_putorius_furo
ENSAOCG00000023744	a1cf	96	84.058	ENSMLUG00000016071	A1CF	100	74.141	Myotis_lucifugus
ENSAOCG00000023744	a1cf	93	85.928	ENSNGAG00000015136	A1cf	100	73.486	Nannospalax_galili
ENSAOCG00000023744	a1cf	97	90.313	ENSNBRG00000001712	a1cf	100	86.820	Neolamprologus_brichardi
ENSAOCG00000023744	a1cf	96	84.638	ENSNLEG00000012028	A1CF	100	74.304	Nomascus_leucogenys
ENSAOCG00000023744	a1cf	88	83.386	ENSMEUG00000015909	A1CF	100	74.427	Notamacropus_eugenii
ENSAOCG00000023744	a1cf	96	68.116	ENSOPRG00000010667	A1CF	97	67.035	Ochotona_princeps
ENSAOCG00000023744	a1cf	97	90.883	ENSONIG00000019105	a1cf	100	86.985	Oreochromis_niloticus
ENSAOCG00000023744	a1cf	96	82.709	ENSOANG00000007360	A1CF	99	76.533	Ornithorhynchus_anatinus
ENSAOCG00000023744	a1cf	96	83.768	ENSOCUG00000011587	A1CF	100	74.834	Oryctolagus_cuniculus
ENSAOCG00000023744	a1cf	97	88.319	ENSORLG00000013342	a1cf	100	83.361	Oryzias_latipes
ENSAOCG00000023744	a1cf	100	85.761	ENSORLG00020000586	a1cf	100	84.288	Oryzias_latipes_hni
ENSAOCG00000023744	a1cf	100	85.761	ENSORLG00015018569	a1cf	100	84.288	Oryzias_latipes_hsok
ENSAOCG00000023744	a1cf	100	86.116	ENSOMEG00000013531	a1cf	100	84.437	Oryzias_melastigma
ENSAOCG00000023744	a1cf	96	83.478	ENSOGAG00000012884	A1CF	100	74.713	Otolemur_garnettii
ENSAOCG00000023744	a1cf	96	83.768	ENSOARG00000013695	A1CF	100	74.304	Ovis_aries
ENSAOCG00000023744	a1cf	96	84.348	ENSPPAG00000028115	A1CF	99	78.346	Pan_paniscus
ENSAOCG00000023744	a1cf	96	83.478	ENSPPRG00000012180	A1CF	100	73.727	Panthera_pardus
ENSAOCG00000023744	a1cf	96	83.478	ENSPTIG00000021223	A1CF	100	73.727	Panthera_tigris_altaica
ENSAOCG00000023744	a1cf	96	84.348	ENSPTRG00000002508	A1CF	100	74.917	Pan_troglodytes
ENSAOCG00000023744	a1cf	96	84.638	ENSPANG00000021988	A1CF	100	75.208	Papio_anubis
ENSAOCG00000023744	a1cf	96	88.406	ENSPKIG00000025176	a1cf	100	79.310	Paramormyrops_kingsleyae
ENSAOCG00000023744	a1cf	96	82.899	ENSPSIG00000010318	A1CF	100	74.875	Pelodiscus_sinensis
ENSAOCG00000023744	a1cf	91	86.930	ENSPMGG00000013359	a1cf	99	74.150	Periophthalmus_magnuspinnatus
ENSAOCG00000023744	a1cf	93	85.928	ENSPEMG00000015021	A1cf	100	73.322	Peromyscus_maniculatus_bairdii
ENSAOCG00000023744	a1cf	96	81.449	ENSPCIG00000002175	A1CF	100	74.542	Phascolarctos_cinereus
ENSAOCG00000023744	a1cf	97	89.459	ENSPFOG00000006683	a1cf	100	86.319	Poecilia_formosa
ENSAOCG00000023744	a1cf	97	89.459	ENSPFOG00000007437	-	100	86.319	Poecilia_formosa
ENSAOCG00000023744	a1cf	100	87.129	ENSPLAG00000000026	a1cf	100	87.294	Poecilia_latipinna
ENSAOCG00000023744	a1cf	100	87.129	ENSPLAG00000001210	-	100	87.294	Poecilia_latipinna
ENSAOCG00000023744	a1cf	100	76.873	ENSPMEG00000015529	-	100	77.036	Poecilia_mexicana
ENSAOCG00000023744	a1cf	100	77.888	ENSPMEG00000000921	a1cf	100	78.053	Poecilia_mexicana
ENSAOCG00000023744	a1cf	97	89.459	ENSPREG00000016298	a1cf	100	85.993	Poecilia_reticulata
ENSAOCG00000023744	a1cf	96	84.638	ENSPPYG00000002819	A1CF	100	75.290	Pongo_abelii
ENSAOCG00000023744	a1cf	79	58.958	ENSPCAG00000006463	A1CF	62	67.109	Procavia_capensis
ENSAOCG00000023744	a1cf	96	83.188	ENSPCOG00000024172	A1CF	100	74.020	Propithecus_coquereli
ENSAOCG00000023744	a1cf	97	90.883	ENSPNYG00000017944	a1cf	100	86.016	Pundamilia_nyererei
ENSAOCG00000023744	a1cf	98	87.006	ENSPNAG00000007704	a1cf	100	82.013	Pygocentrus_nattereri
ENSAOCG00000023744	a1cf	93	85.629	ENSRNOG00000033195	A1cf	100	74.295	Rattus_norvegicus
ENSAOCG00000023744	a1cf	96	76.812	ENSRBIG00000042892	A1CF	100	72.868	Rhinopithecus_bieti
ENSAOCG00000023744	a1cf	96	84.638	ENSRROG00000041398	A1CF	100	74.220	Rhinopithecus_roxellana
ENSAOCG00000023744	a1cf	96	84.638	ENSSBOG00000021930	A1CF	100	74.548	Saimiri_boliviensis_boliviensis
ENSAOCG00000023744	a1cf	96	82.899	ENSSHAG00000005096	A1CF	100	74.542	Sarcophilus_harrisii
ENSAOCG00000023744	a1cf	96	88.116	ENSSFOG00015011774	a1cf	100	81.518	Scleropages_formosus
ENSAOCG00000023744	a1cf	97	88.034	ENSSMAG00000013271	a1cf	100	86.201	Scophthalmus_maximus
ENSAOCG00000023744	a1cf	97	91.168	ENSSDUG00000013930	a1cf	100	87.829	Seriola_dumerili
ENSAOCG00000023744	a1cf	93	94.627	ENSSLDG00000004290	a1cf	100	81.167	Seriola_lalandi_dorsalis
ENSAOCG00000023744	a1cf	95	68.007	ENSSARG00000005940	A1CF	95	67.657	Sorex_araneus
ENSAOCG00000023744	a1cf	90	82.407	ENSSPUG00000006797	A1CF	95	73.868	Sphenodon_punctatus
ENSAOCG00000023744	a1cf	96	84.348	ENSSSCG00000010431	A1CF	100	74.468	Sus_scrofa
ENSAOCG00000023744	a1cf	96	84.638	ENSTGUG00000005090	A1CF	100	75.041	Taeniopygia_guttata
ENSAOCG00000023744	a1cf	96	88.473	ENSTRUG00000001982	a1cf	100	82.114	Takifugu_rubripes
ENSAOCG00000023744	a1cf	100	84.091	ENSTNIG00000003580	a1cf	100	82.468	Tetraodon_nigroviridis
ENSAOCG00000023744	a1cf	97	70.548	ENSTTRG00000013190	A1CF	95	69.692	Tursiops_truncatus
ENSAOCG00000023744	a1cf	96	83.478	ENSUAMG00000020065	A1CF	100	74.709	Ursus_americanus
ENSAOCG00000023744	a1cf	96	83.478	ENSUMAG00000011162	A1CF	100	73.235	Ursus_maritimus
ENSAOCG00000023744	a1cf	76	84.672	ENSVPAG00000006130	A1CF	86	71.591	Vicugna_pacos
ENSAOCG00000023744	a1cf	96	83.188	ENSVVUG00000002504	A1CF	100	74.667	Vulpes_vulpes
ENSAOCG00000023744	a1cf	96	75.072	ENSXETG00000006611	a1cf	100	67.159	Xenopus_tropicalis
ENSAOCG00000023744	a1cf	100	88.614	ENSXCOG00000003302	a1cf	100	87.583	Xiphophorus_couchianus
ENSAOCG00000023744	a1cf	100	87.459	ENSXMAG00000016703	a1cf	100	86.438	Xiphophorus_maculatus