EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAOCG00000024134 (Gene tree)
Gene ID: 111571443
Gene Symbol: -
Alias: -
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Plus strand
Length: 16807 bases
Position: chrNXFZ01002784.1:1265876-1282682
Accession: 111571443
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000018936	RRM_1	PF00076.22	3.8e-07	1	1
ENSAOCP00000032061	RRM_1	PF00076.22	4.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000033346	-	4929	XM_023274588	ENSAOCP00000018936	549 (aa)	XP_023130356	UPI000C30211B
ENSAOCT00000033349	-	5037	XM_023274586	ENSAOCP00000032061	585 (aa)	XP_023130354	UPI000C309286

Gene Model

Click here to download ENSAOCG00000024134's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000024134's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAOCG00000024134	-	100	100.000	ENSAOCG00000017865	cpsf6	100	100.000
ENSAOCG00000024134	-	58	39.623	ENSAOCG00000012357	CPSF7	58	52.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000024134	-	100	99.658	ENSAPOG00000009771	-	100	99.658	Acanthochromis_polyacanthus
ENSAOCG00000024134	-	100	99.829	ENSAPEG00000004361	-	100	99.829	Amphiprion_percula
ENSAOCG00000024134	-	100	97.818	ENSATEG00000014806	-	100	97.818	Anabas_testudineus
ENSAOCG00000024134	-	73	80.637	ENSAPLG00000010887	CPSF6	54	84.234	Anas_platyrhynchos
ENSAOCG00000024134	-	65	52.604	ENSCPBG00000017691	-	72	56.395	Chrysemys_picta_bellii
ENSAOCG00000024134	-	95	41.899	ENSDORG00000000998	-	73	57.558	Dipodomys_ordii