EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAOCG00000024444 (Gene tree)
Gene ID: 111570771
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Amphiprion_ocellaris
Status: putative
Strand: Minus strand
Length: 4934 bases
Position: chrNXFZ01002493.1:949665-954598
Accession: 111570771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAOCP00000032230	SMN	PF06003.12	1.2e-112	1	1
ENSAOCP00000019193	SMN	PF06003.12	2.9e-104	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAOCT00000028986	-	2105	XM_023273705	ENSAOCP00000032230	283 (aa)	XP_023129473	UPI000C30F3D6
ENSAOCT00000033467	-	837	-	ENSAOCP00000019193	278 (aa)	-	-

Gene Model

Click here to download ENSAOCG00000024444's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAOCG00000024444's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAOCG00000024444	smn1	94	52.518	ENSG00000205571	SMN2	92	51.685	Homo_sapiens
ENSAOCG00000024444	smn1	94	52.518	ENSG00000172062	SMN1	92	51.685	Homo_sapiens
ENSAOCG00000024444	smn1	100	95.760	ENSAPOG00000011324	smn1	100	95.760	Acanthochromis_polyacanthus
ENSAOCG00000024444	smn1	94	53.261	ENSAMEG00000003316	-	89	51.986	Ailuropoda_melanoleuca
ENSAOCG00000024444	smn1	93	78.327	ENSACIG00000019772	-	99	78.327	Amphilophus_citrinellus
ENSAOCG00000024444	smn1	61	77.647	ENSACIG00000007598	smn1	94	77.647	Amphilophus_citrinellus
ENSAOCG00000024444	smn1	100	98.921	ENSAPEG00000016504	smn1	100	98.921	Amphiprion_percula
ENSAOCG00000024444	smn1	95	85.926	ENSATEG00000002182	smn1	82	84.074	Anabas_testudineus
ENSAOCG00000024444	smn1	69	40.741	ENSAPLG00000010912	-	96	45.918	Anas_platyrhynchos
ENSAOCG00000024444	smn1	98	52.632	ENSACAG00000010017	-	96	52.098	Anolis_carolinensis
ENSAOCG00000024444	smn1	94	50.178	ENSANAG00000032133	-	92	49.275	Aotus_nancymaae
ENSAOCG00000024444	smn1	99	80.287	ENSACLG00000007308	smn1	94	79.928	Astatotilapia_calliptera
ENSAOCG00000024444	smn1	100	63.380	ENSAMXG00000013884	smn1	100	64.912	Astyanax_mexicanus
ENSAOCG00000024444	smn1	94	51.799	ENSBTAG00000005743	SMN2	93	50.725	Bos_taurus
ENSAOCG00000024444	smn1	94	53.763	ENSCJAG00000016290	-	92	49.630	Callithrix_jacchus
ENSAOCG00000024444	smn1	94	51.613	ENSCAFG00000007812	SMN	93	51.625	Canis_familiaris
ENSAOCG00000024444	smn1	94	51.613	ENSCAFG00020019229	-	86	51.625	Canis_lupus_dingo
ENSAOCG00000024444	smn1	94	52.593	ENSCHIG00000015559	-	91	50.725	Capra_hircus
ENSAOCG00000024444	smn1	94	53.623	ENSTSYG00000012058	-	93	52.727	Carlito_syrichta
ENSAOCG00000024444	smn1	73	47.393	ENSCAPG00000011021	-	88	46.667	Cavia_aperea
ENSAOCG00000024444	smn1	94	52.347	ENSCPOG00000036973	-	92	53.237	Cavia_porcellus
ENSAOCG00000024444	smn1	94	52.128	ENSCPOG00000012328	-	93	53.004	Cavia_porcellus
ENSAOCG00000024444	smn1	94	51.292	ENSCCAG00000018127	-	91	50.000	Cebus_capucinus
ENSAOCG00000024444	smn1	94	52.518	ENSCATG00000037002	-	92	52.060	Cercocebus_atys
ENSAOCG00000024444	smn1	94	50.362	ENSCLAG00000000284	-	92	52.500	Chinchilla_lanigera
ENSAOCG00000024444	smn1	94	52.878	ENSCSAG00000015688	-	91	52.174	Chlorocebus_sabaeus
ENSAOCG00000024444	smn1	88	47.308	ENSCHOG00000007346	-	77	86.957	Choloepus_hoffmanni
ENSAOCG00000024444	smn1	96	49.827	ENSCPBG00000010968	-	97	49.434	Chrysemys_picta_bellii
ENSAOCG00000024444	smn1	97	49.643	ENSCANG00000033324	-	94	48.611	Colobus_angolensis_palliatus
ENSAOCG00000024444	smn1	94	53.261	ENSCANG00000038242	-	93	52.434	Colobus_angolensis_palliatus
ENSAOCG00000024444	smn1	94	52.727	ENSCGRG00001017959	-	93	51.481	Cricetulus_griseus_chok1gshd
ENSAOCG00000024444	smn1	94	41.481	ENSCGRG00001016998	-	91	38.745	Cricetulus_griseus_chok1gshd
ENSAOCG00000024444	smn1	94	52.727	ENSCGRG00000007698	Smn1	93	51.481	Cricetulus_griseus_crigri
ENSAOCG00000024444	smn1	98	66.434	ENSCSEG00000015227	smn1	100	66.783	Cynoglossus_semilaevis
ENSAOCG00000024444	smn1	100	80.634	ENSCVAG00000007498	smn1	100	80.634	Cyprinodon_variegatus
ENSAOCG00000024444	smn1	100	64.808	ENSDARG00000018494	smn1	100	65.505	Danio_rerio
ENSAOCG00000024444	smn1	82	42.918	ENSDNOG00000045949	-	65	55.782	Dasypus_novemcinctus
ENSAOCG00000024444	smn1	82	48.548	ENSDNOG00000007283	-	86	47.685	Dasypus_novemcinctus
ENSAOCG00000024444	smn1	94	43.116	ENSDORG00000007082	Smn1	90	44.151	Dipodomys_ordii
ENSAOCG00000024444	smn1	65	44.086	ENSETEG00000001406	-	87	46.111	Echinops_telfairi
ENSAOCG00000024444	smn1	96	40.273	ENSEBUG00000011902	smn1	96	37.415	Eptatretus_burgeri
ENSAOCG00000024444	smn1	89	46.718	ENSEASG00005018000	-	89	46.360	Equus_asinus_asinus
ENSAOCG00000024444	smn1	94	51.825	ENSECAG00000015215	-	93	51.264	Equus_caballus
ENSAOCG00000024444	smn1	88	51.724	ENSEEUG00000015777	-	100	50.000	Erinaceus_europaeus
ENSAOCG00000024444	smn1	100	68.310	ENSELUG00000018067	smn1	100	67.958	Esox_lucius
ENSAOCG00000024444	smn1	94	52.347	ENSFCAG00000028292	SMN	93	51.986	Felis_catus
ENSAOCG00000024444	smn1	95	53.455	ENSFALG00000012320	-	95	50.000	Ficedula_albicollis
ENSAOCG00000024444	smn1	94	49.286	ENSFDAG00000017683	-	92	52.313	Fukomys_damarensis
ENSAOCG00000024444	smn1	97	80.797	ENSFHEG00000018508	smn1	100	80.797	Fundulus_heteroclitus
ENSAOCG00000024444	smn1	100	67.491	ENSGMOG00000017279	smn1	98	65.724	Gadus_morhua
ENSAOCG00000024444	smn1	95	51.481	ENSGALG00000002430	SMN	97	49.213	Gallus_gallus
ENSAOCG00000024444	smn1	100	82.686	ENSGAFG00000009501	smn1	100	82.686	Gambusia_affinis
ENSAOCG00000024444	smn1	100	81.272	ENSGACG00000010584	smn1	97	79.505	Gasterosteus_aculeatus
ENSAOCG00000024444	smn1	96	51.439	ENSGAGG00000011374	-	95	49.822	Gopherus_agassizii
ENSAOCG00000024444	smn1	98	35.075	ENSGAGG00000013639	-	92	35.821	Gopherus_agassizii
ENSAOCG00000024444	smn1	91	50.388	ENSGGOG00000003872	-	93	48.473	Gorilla_gorilla
ENSAOCG00000024444	smn1	55	60.759	ENSGGOG00000026704	-	85	55.556	Gorilla_gorilla
ENSAOCG00000024444	smn1	100	83.039	ENSHBUG00000013987	smn1	100	82.686	Haplochromis_burtoni
ENSAOCG00000024444	smn1	94	48.188	ENSHGLG00000001905	-	94	46.309	Heterocephalus_glaber_female
ENSAOCG00000024444	smn1	94	51.825	ENSHGLG00000001018	-	92	52.688	Heterocephalus_glaber_female
ENSAOCG00000024444	smn1	94	51.825	ENSHGLG00100011252	-	92	52.688	Heterocephalus_glaber_male
ENSAOCG00000024444	smn1	92	47.368	ENSHGLG00100018676	-	96	47.619	Heterocephalus_glaber_male
ENSAOCG00000024444	smn1	94	75.849	ENSHCOG00000017136	smn1	89	75.849	Hippocampus_comes
ENSAOCG00000024444	smn1	100	65.505	ENSIPUG00000012580	smn1	89	65.505	Ictalurus_punctatus
ENSAOCG00000024444	smn1	91	52.453	ENSSTOG00000012288	-	93	51.698	Ictidomys_tridecemlineatus
ENSAOCG00000024444	smn1	51	51.049	ENSJJAG00000014853	-	91	45.455	Jaculus_jaculus
ENSAOCG00000024444	smn1	100	80.070	ENSKMAG00000007239	smn1	100	80.070	Kryptolebias_marmoratus
ENSAOCG00000024444	smn1	100	84.155	ENSLBEG00000022550	smn1	100	83.451	Labrus_bergylta
ENSAOCG00000024444	smn1	99	35.548	ENSLACG00000009808	-	95	35.172	Latimeria_chalumnae
ENSAOCG00000024444	smn1	100	57.241	ENSLOCG00000011339	smn1	100	57.042	Lepisosteus_oculatus
ENSAOCG00000024444	smn1	94	52.381	ENSLAFG00000003425	-	89	52.857	Loxodonta_africana
ENSAOCG00000024444	smn1	94	53.237	ENSMFAG00000031523	SMN1	95	51.119	Macaca_fascicularis
ENSAOCG00000024444	smn1	94	49.640	ENSMFAG00000008812	-	91	48.736	Macaca_fascicularis
ENSAOCG00000024444	smn1	94	49.281	ENSMMUG00000030594	-	91	48.375	Macaca_mulatta
ENSAOCG00000024444	smn1	94	53.237	ENSMMUG00000020214	SMN1	92	52.809	Macaca_mulatta
ENSAOCG00000024444	smn1	94	53.237	ENSMNEG00000035094	-	92	52.809	Macaca_nemestrina
ENSAOCG00000024444	smn1	76	40.789	ENSMNEG00000036423	-	81	39.352	Macaca_nemestrina
ENSAOCG00000024444	smn1	94	53.237	ENSMLEG00000041902	-	93	52.809	Mandrillus_leucophaeus
ENSAOCG00000024444	smn1	100	83.451	ENSMAMG00000011034	smn1	100	82.394	Mastacembelus_armatus
ENSAOCG00000024444	smn1	100	83.392	ENSMZEG00005013634	smn1	100	83.039	Maylandia_zebra
ENSAOCG00000024444	smn1	69	50.761	ENSMGAG00000008889	-	95	45.026	Meleagris_gallopavo
ENSAOCG00000024444	smn1	94	52.536	ENSMAUG00000010262	Smn1	93	51.111	Mesocricetus_auratus
ENSAOCG00000024444	smn1	82	49.153	ENSMICG00000034708	-	81	55.000	Microcebus_murinus
ENSAOCG00000024444	smn1	94	52.727	ENSMOCG00000017833	Smn1	93	51.852	Microtus_ochrogaster
ENSAOCG00000024444	smn1	96	73.801	ENSMMOG00000005504	smn1	97	71.642	Mola_mola
ENSAOCG00000024444	smn1	94	55.147	ENSMODG00000001436	-	92	49.442	Monodelphis_domestica
ENSAOCG00000024444	smn1	100	85.915	ENSMALG00000008025	smn1	100	84.507	Monopterus_albus
ENSAOCG00000024444	smn1	94	53.623	MGP_CAROLIEiJ_G0018836	Smn1	93	53.506	Mus_caroli
ENSAOCG00000024444	smn1	94	53.623	ENSMUSG00000021645	Smn1	93	53.506	Mus_musculus
ENSAOCG00000024444	smn1	94	55.019	MGP_PahariEiJ_G0015911	Smn1	93	53.506	Mus_pahari
ENSAOCG00000024444	smn1	94	53.623	MGP_SPRETEiJ_G0019718	Smn1	93	53.137	Mus_spretus
ENSAOCG00000024444	smn1	92	52.768	ENSMPUG00000014470	-	93	53.506	Mustela_putorius_furo
ENSAOCG00000024444	smn1	94	50.000	ENSMLUG00000010603	-	89	50.175	Myotis_lucifugus
ENSAOCG00000024444	smn1	94	50.909	ENSNGAG00000019833	Smn1	93	51.799	Nannospalax_galili
ENSAOCG00000024444	smn1	100	84.452	ENSNBRG00000023000	smn1	100	84.452	Neolamprologus_brichardi
ENSAOCG00000024444	smn1	94	52.878	ENSNLEG00000004454	-	92	52.060	Nomascus_leucogenys
ENSAOCG00000024444	smn1	67	51.282	ENSMEUG00000011393	-	100	46.121	Notamacropus_eugenii
ENSAOCG00000024444	smn1	88	49.049	ENSOPRG00000002015	-	100	49.807	Ochotona_princeps
ENSAOCG00000024444	smn1	91	54.275	ENSODEG00000015976	-	91	53.676	Octodon_degus
ENSAOCG00000024444	smn1	100	84.099	ENSONIG00000011799	smn1	100	84.099	Oreochromis_niloticus
ENSAOCG00000024444	smn1	94	47.331	ENSOANG00000001626	-	95	46.014	Ornithorhynchus_anatinus
ENSAOCG00000024444	smn1	94	41.993	ENSOCUG00000025183	-	92	42.238	Oryctolagus_cuniculus
ENSAOCG00000024444	smn1	94	53.261	ENSOCUG00000026649	-	92	50.530	Oryctolagus_cuniculus
ENSAOCG00000024444	smn1	94	53.506	ENSOCUG00000017097	-	92	50.719	Oryctolagus_cuniculus
ENSAOCG00000024444	smn1	100	79.152	ENSORLG00000010552	smn1	100	79.152	Oryzias_latipes
ENSAOCG00000024444	smn1	100	74.910	ENSORLG00020007936	smn1	100	71.479	Oryzias_latipes_hni
ENSAOCG00000024444	smn1	100	78.799	ENSORLG00015022425	smn1	100	78.799	Oryzias_latipes_hsok
ENSAOCG00000024444	smn1	100	80.212	ENSOMEG00000007824	smn1	100	80.212	Oryzias_melastigma
ENSAOCG00000024444	smn1	91	49.265	ENSOGAG00000031414	-	92	48.175	Otolemur_garnettii
ENSAOCG00000024444	smn1	94	51.852	ENSOARG00000005425	-	97	49.818	Ovis_aries
ENSAOCG00000024444	smn1	94	52.518	ENSPPAG00000036640	-	92	51.685	Pan_paniscus
ENSAOCG00000024444	smn1	94	52.347	ENSPPRG00000005575	-	93	51.986	Panthera_pardus
ENSAOCG00000024444	smn1	94	52.158	ENSPTIG00000007745	-	93	51.986	Panthera_tigris_altaica
ENSAOCG00000024444	smn1	94	51.957	ENSPTRG00000016955	-	92	51.685	Pan_troglodytes
ENSAOCG00000024444	smn1	94	53.237	ENSPANG00000013601	-	91	52.536	Papio_anubis
ENSAOCG00000024444	smn1	94	50.000	ENSPANG00000000253	-	91	49.458	Papio_anubis
ENSAOCG00000024444	smn1	100	60.351	ENSPKIG00000011096	smn1	100	57.857	Paramormyrops_kingsleyae
ENSAOCG00000024444	smn1	92	53.933	ENSPSIG00000014787	-	83	49.621	Pelodiscus_sinensis
ENSAOCG00000024444	smn1	100	72.378	ENSPMGG00000012285	smn1	100	67.007	Periophthalmus_magnuspinnatus
ENSAOCG00000024444	smn1	92	40.659	ENSPMAG00000005004	smn1	91	38.433	Petromyzon_marinus
ENSAOCG00000024444	smn1	94	54.779	ENSPCIG00000025764	-	93	49.071	Phascolarctos_cinereus
ENSAOCG00000024444	smn1	100	83.039	ENSPFOG00000007786	smn1	100	83.039	Poecilia_formosa
ENSAOCG00000024444	smn1	100	82.686	ENSPLAG00000012071	smn1	100	82.686	Poecilia_latipinna
ENSAOCG00000024444	smn1	100	83.039	ENSPMEG00000017085	smn1	100	83.039	Poecilia_mexicana
ENSAOCG00000024444	smn1	100	82.686	ENSPREG00000005824	smn1	100	82.686	Poecilia_reticulata
ENSAOCG00000024444	smn1	92	50.923	ENSPPYG00000015533	-	95	50.000	Pongo_abelii
ENSAOCG00000024444	smn1	51	45.517	ENSPPYG00000019189	-	99	37.398	Pongo_abelii
ENSAOCG00000024444	smn1	91	51.825	ENSPCAG00000004187	-	97	50.725	Procavia_capensis
ENSAOCG00000024444	smn1	64	51.099	ENSPCOG00000022307	-	70	54.194	Propithecus_coquereli
ENSAOCG00000024444	smn1	94	53.623	ENSPVAG00000005977	-	92	52.347	Pteropus_vampyrus
ENSAOCG00000024444	smn1	100	84.452	ENSPNYG00000014148	smn1	100	84.452	Pundamilia_nyererei
ENSAOCG00000024444	smn1	100	65.035	ENSPNAG00000014007	smn1	87	65.734	Pygocentrus_nattereri
ENSAOCG00000024444	smn1	94	53.091	ENSRNOG00000018067	Smn1	92	51.111	Rattus_norvegicus
ENSAOCG00000024444	smn1	94	52.878	ENSRBIG00000037052	-	91	52.174	Rhinopithecus_bieti
ENSAOCG00000024444	smn1	97	47.670	ENSRBIG00000036775	-	93	46.595	Rhinopithecus_bieti
ENSAOCG00000024444	smn1	94	49.259	ENSRROG00000031088	-	91	44.948	Rhinopithecus_roxellana
ENSAOCG00000024444	smn1	94	52.878	ENSRROG00000039399	-	94	50.530	Rhinopithecus_roxellana
ENSAOCG00000024444	smn1	94	54.545	ENSSBOG00000011665	-	91	50.376	Saimiri_boliviensis_boliviensis
ENSAOCG00000024444	smn1	56	55.280	ENSSBOG00000020112	-	87	45.200	Saimiri_boliviensis_boliviensis
ENSAOCG00000024444	smn1	94	55.147	ENSSHAG00000001499	-	98	46.840	Sarcophilus_harrisii
ENSAOCG00000024444	smn1	100	61.538	ENSSFOG00015015507	smn1	100	60.071	Scleropages_formosus
ENSAOCG00000024444	smn1	100	80.212	ENSSMAG00000007922	smn1	100	80.212	Scophthalmus_maximus
ENSAOCG00000024444	smn1	100	87.676	ENSSDUG00000018533	smn1	100	85.915	Seriola_dumerili
ENSAOCG00000024444	smn1	100	88.028	ENSSLDG00000021135	smn1	100	86.268	Seriola_lalandi_dorsalis
ENSAOCG00000024444	smn1	96	54.317	ENSSPUG00000000373	-	98	50.177	Sphenodon_punctatus
ENSAOCG00000024444	smn1	100	90.459	ENSSPAG00000004345	smn1	100	90.459	Stegastes_partitus
ENSAOCG00000024444	smn1	94	40.977	ENSSSCG00000029127	-	75	68.750	Sus_scrofa
ENSAOCG00000024444	smn1	94	52.708	ENSSSCG00000016970	-	92	52.347	Sus_scrofa
ENSAOCG00000024444	smn1	91	50.725	ENSTGUG00000001548	-	97	48.727	Taeniopygia_guttata
ENSAOCG00000024444	smn1	100	67.845	ENSTRUG00000000736	smn	100	68.198	Takifugu_rubripes
ENSAOCG00000024444	smn1	100	67.931	ENSTNIG00000009892	smn1	100	70.345	Tetraodon_nigroviridis
ENSAOCG00000024444	smn1	65	55.435	ENSTBEG00000002399	-	87	56.354	Tupaia_belangeri
ENSAOCG00000024444	smn1	94	54.015	ENSTTRG00000005080	-	91	53.309	Tursiops_truncatus
ENSAOCG00000024444	smn1	58	59.412	ENSUAMG00000024947	-	66	56.906	Ursus_americanus
ENSAOCG00000024444	smn1	94	53.986	ENSUMAG00000007842	-	69	54.513	Ursus_maritimus
ENSAOCG00000024444	smn1	91	49.425	ENSVPAG00000009887	-	61	82.609	Vicugna_pacos
ENSAOCG00000024444	smn1	94	51.613	ENSVVUG00000006934	-	93	51.625	Vulpes_vulpes
ENSAOCG00000024444	smn1	87	32.819	ENSXETG00000004912	-	82	63.793	Xenopus_tropicalis
ENSAOCG00000024444	smn1	95	57.040	ENSXETG00000018189	smn2	95	50.859	Xenopus_tropicalis
ENSAOCG00000024444	smn1	100	81.625	ENSXMAG00000001521	smn1	100	81.625	Xiphophorus_maculatus