EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPEG00000002252 (Gene tree)
Gene ID: -
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog b
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Minus strand
Length: 10032 bases
Position: chr19:8877-18908
Accession: ZDB-GENE-040426-2164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000003117	AD	PF09793.9	2.3e-25	1	1
ENSAPEP00000003103	AD	PF09793.9	3.5e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000003175	-	2275	-	ENSAPEP00000003103	196 (aa)	-	UPI0001F34FB0
ENSAPET00000003189	-	2294	-	ENSAPEP00000003117	188 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000002252's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000002252's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000002252	lsm12b	100	85.714	ENSG00000161654	LSM12	100	85.714	Homo_sapiens
ENSAPEG00000002252	lsm12b	100	99.490	ENSAPOG00000007907	lsm12b	100	99.490	Acanthochromis_polyacanthus
ENSAPEG00000002252	lsm12b	100	83.920	ENSAMEG00000018321	LSM12	100	83.920	Ailuropoda_melanoleuca
ENSAPEG00000002252	lsm12b	100	97.959	ENSACIG00000008538	lsm12b	100	97.959	Amphilophus_citrinellus
ENSAPEG00000002252	lsm12b	100	100.000	ENSAOCG00000021847	lsm12b	88	100.000	Amphiprion_ocellaris
ENSAPEG00000002252	lsm12b	100	98.469	ENSATEG00000005705	lsm12b	100	98.469	Anabas_testudineus
ENSAPEG00000002252	lsm12b	100	84.694	ENSACAG00000004618	LSM12	100	84.694	Anolis_carolinensis
ENSAPEG00000002252	lsm12b	100	85.714	ENSANAG00000029011	LSM12	100	85.714	Aotus_nancymaae
ENSAPEG00000002252	lsm12b	100	98.469	ENSACLG00000026332	lsm12b	100	98.469	Astatotilapia_calliptera
ENSAPEG00000002252	lsm12b	100	94.388	ENSAMXG00000032952	lsm12b	100	94.388	Astyanax_mexicanus
ENSAPEG00000002252	lsm12b	100	86.224	ENSAMXG00000036117	lsm12a	91	86.224	Astyanax_mexicanus
ENSAPEG00000002252	lsm12b	100	85.714	ENSBTAG00000016252	LSM12	100	85.714	Bos_taurus
ENSAPEG00000002252	lsm12b	100	85.714	ENSCJAG00000048480	LSM12	100	85.714	Callithrix_jacchus
ENSAPEG00000002252	lsm12b	100	85.714	ENSCAFG00000014379	LSM12	92	85.714	Canis_familiaris
ENSAPEG00000002252	lsm12b	100	85.714	ENSCAFG00020012173	LSM12	100	85.714	Canis_lupus_dingo
ENSAPEG00000002252	lsm12b	100	85.714	ENSCHIG00000018175	LSM12	100	85.714	Capra_hircus
ENSAPEG00000002252	lsm12b	100	85.714	ENSTSYG00000036361	LSM12	100	85.714	Carlito_syrichta
ENSAPEG00000002252	lsm12b	83	81.481	ENSCAPG00000009647	LSM12	89	81.481	Cavia_aperea
ENSAPEG00000002252	lsm12b	100	84.694	ENSCPOG00000012860	LSM12	100	84.694	Cavia_porcellus
ENSAPEG00000002252	lsm12b	100	85.714	ENSCCAG00000032905	LSM12	100	85.714	Cebus_capucinus
ENSAPEG00000002252	lsm12b	100	85.714	ENSCATG00000030577	-	100	85.714	Cercocebus_atys
ENSAPEG00000002252	lsm12b	100	85.204	ENSCLAG00000015759	LSM12	100	85.204	Chinchilla_lanigera
ENSAPEG00000002252	lsm12b	100	86.224	ENSCSAG00000003486	LSM12	100	86.224	Chlorocebus_sabaeus
ENSAPEG00000002252	lsm12b	56	86.239	ENSCHOG00000001198	LSM12	100	86.239	Choloepus_hoffmanni
ENSAPEG00000002252	lsm12b	100	86.224	ENSCPBG00000027105	LSM12	100	86.224	Chrysemys_picta_bellii
ENSAPEG00000002252	lsm12b	100	85.714	ENSCANG00000043328	LSM12	100	85.714	Colobus_angolensis_palliatus
ENSAPEG00000002252	lsm12b	100	85.714	ENSCGRG00001002094	Lsm12	100	85.714	Cricetulus_griseus_chok1gshd
ENSAPEG00000002252	lsm12b	89	77.586	ENSCGRG00000004316	Lsm12	98	77.586	Cricetulus_griseus_crigri
ENSAPEG00000002252	lsm12b	100	98.469	ENSCSEG00000008434	lsm12b	100	98.469	Cynoglossus_semilaevis
ENSAPEG00000002252	lsm12b	100	97.959	ENSCVAG00000008755	lsm12b	100	97.959	Cyprinodon_variegatus
ENSAPEG00000002252	lsm12b	100	87.245	ENSDARG00000028848	lsm12a	100	87.245	Danio_rerio
ENSAPEG00000002252	lsm12b	100	95.408	ENSDARG00000109510	lsm12b	100	95.408	Danio_rerio
ENSAPEG00000002252	lsm12b	100	85.714	ENSDNOG00000002418	LSM12	91	85.714	Dasypus_novemcinctus
ENSAPEG00000002252	lsm12b	100	85.714	ENSDORG00000016381	Lsm12	100	85.714	Dipodomys_ordii
ENSAPEG00000002252	lsm12b	77	32.911	FBgn0036057	CG14164	83	32.911	Drosophila_melanogaster
ENSAPEG00000002252	lsm12b	86	33.333	FBgn0030364	Lsm12	76	33.735	Drosophila_melanogaster
ENSAPEG00000002252	lsm12b	100	85.204	ENSETEG00000008374	LSM12	100	85.204	Echinops_telfairi
ENSAPEG00000002252	lsm12b	88	76.301	ENSETEG00000011012	-	99	76.301	Echinops_telfairi
ENSAPEG00000002252	lsm12b	90	66.864	ENSEBUG00000016299	lsm12a	93	66.864	Eptatretus_burgeri
ENSAPEG00000002252	lsm12b	100	85.714	ENSEASG00005010155	LSM12	100	85.714	Equus_asinus_asinus
ENSAPEG00000002252	lsm12b	100	85.714	ENSECAG00000009071	LSM12	100	85.714	Equus_caballus
ENSAPEG00000002252	lsm12b	78	85.621	ENSEEUG00000002419	-	100	85.621	Erinaceus_europaeus
ENSAPEG00000002252	lsm12b	100	92.857	ENSELUG00000000256	-	100	92.857	Esox_lucius
ENSAPEG00000002252	lsm12b	100	95.408	ENSELUG00000015538	lsm12b	100	90.816	Esox_lucius
ENSAPEG00000002252	lsm12b	100	85.714	ENSFCAG00000037021	LSM12	100	85.714	Felis_catus
ENSAPEG00000002252	lsm12b	80	82.051	ENSFDAG00000008954	LSM12	91	82.051	Fukomys_damarensis
ENSAPEG00000002252	lsm12b	100	97.959	ENSFHEG00000019913	lsm12b	100	97.959	Fundulus_heteroclitus
ENSAPEG00000002252	lsm12b	81	98.734	ENSGMOG00000015449	lsm12b	100	98.734	Gadus_morhua
ENSAPEG00000002252	lsm12b	78	86.275	ENSGALG00000039803	LSM12	100	86.275	Gallus_gallus
ENSAPEG00000002252	lsm12b	100	97.959	ENSGAFG00000011829	lsm12b	100	97.959	Gambusia_affinis
ENSAPEG00000002252	lsm12b	81	99.367	ENSGACG00000003428	lsm12b	100	99.367	Gasterosteus_aculeatus
ENSAPEG00000002252	lsm12b	100	85.204	ENSGAGG00000021965	LSM12	100	85.204	Gopherus_agassizii
ENSAPEG00000002252	lsm12b	100	85.714	ENSGGOG00000010589	-	100	85.714	Gorilla_gorilla
ENSAPEG00000002252	lsm12b	99	89.247	ENSHBUG00000007667	lsm12b	74	98.204	Haplochromis_burtoni
ENSAPEG00000002252	lsm12b	100	85.714	ENSHGLG00000011411	LSM12	100	85.714	Heterocephalus_glaber_female
ENSAPEG00000002252	lsm12b	79	85.065	ENSHGLG00100000241	LSM12	82	85.065	Heterocephalus_glaber_male
ENSAPEG00000002252	lsm12b	100	95.918	ENSHCOG00000002094	lsm12b	100	95.918	Hippocampus_comes
ENSAPEG00000002252	lsm12b	100	94.898	ENSIPUG00000014800	lsm12	100	94.898	Ictalurus_punctatus
ENSAPEG00000002252	lsm12b	99	84.021	ENSIPUG00000008936	lsm12a	99	84.021	Ictalurus_punctatus
ENSAPEG00000002252	lsm12b	100	85.714	ENSSTOG00000007403	LSM12	100	85.714	Ictidomys_tridecemlineatus
ENSAPEG00000002252	lsm12b	84	73.585	ENSJJAG00000014652	-	95	73.585	Jaculus_jaculus
ENSAPEG00000002252	lsm12b	96	76.316	ENSJJAG00000011793	-	100	76.316	Jaculus_jaculus
ENSAPEG00000002252	lsm12b	100	84.694	ENSJJAG00000004364	-	100	85.455	Jaculus_jaculus
ENSAPEG00000002252	lsm12b	90	96.471	ENSKMAG00000007704	lsm12b	56	97.605	Kryptolebias_marmoratus
ENSAPEG00000002252	lsm12b	100	99.490	ENSLBEG00000027999	lsm12b	100	99.490	Labrus_bergylta
ENSAPEG00000002252	lsm12b	100	88.265	ENSLACG00000015981	LSM12	100	88.265	Latimeria_chalumnae
ENSAPEG00000002252	lsm12b	100	92.857	ENSLOCG00000013079	lsm12b	99	92.857	Lepisosteus_oculatus
ENSAPEG00000002252	lsm12b	100	85.714	ENSLAFG00000005202	LSM12	100	85.714	Loxodonta_africana
ENSAPEG00000002252	lsm12b	100	85.714	ENSMFAG00000031376	LSM12	100	85.714	Macaca_fascicularis
ENSAPEG00000002252	lsm12b	100	85.714	ENSMMUG00000006804	LSM12	100	85.714	Macaca_mulatta
ENSAPEG00000002252	lsm12b	65	74.713	ENSMMUG00000042106	-	100	74.713	Macaca_mulatta
ENSAPEG00000002252	lsm12b	100	85.714	ENSMNEG00000030594	-	100	85.714	Macaca_nemestrina
ENSAPEG00000002252	lsm12b	100	85.714	ENSMLEG00000039934	LSM12	100	85.714	Mandrillus_leucophaeus
ENSAPEG00000002252	lsm12b	100	99.490	ENSMAMG00000004279	lsm12b	100	99.490	Mastacembelus_armatus
ENSAPEG00000002252	lsm12b	100	98.469	ENSMZEG00005005754	lsm12b	100	98.469	Maylandia_zebra
ENSAPEG00000002252	lsm12b	100	86.224	ENSMICG00000037219	LSM12	100	86.224	Microcebus_murinus
ENSAPEG00000002252	lsm12b	100	72.959	ENSMOCG00000017015	-	86	72.959	Microtus_ochrogaster
ENSAPEG00000002252	lsm12b	100	85.714	ENSMOCG00000019878	-	100	85.714	Microtus_ochrogaster
ENSAPEG00000002252	lsm12b	100	99.490	ENSMMOG00000020848	lsm12b	100	99.490	Mola_mola
ENSAPEG00000002252	lsm12b	100	99.490	ENSMALG00000007578	lsm12b	100	99.490	Monopterus_albus
ENSAPEG00000002252	lsm12b	100	85.204	MGP_CAROLIEiJ_G0017241	Lsm12	100	85.204	Mus_caroli
ENSAPEG00000002252	lsm12b	100	85.714	ENSMUSG00000020922	Lsm12	100	85.714	Mus_musculus
ENSAPEG00000002252	lsm12b	100	78.873	MGP_PahariEiJ_G0018371	Lsm12	100	78.873	Mus_pahari
ENSAPEG00000002252	lsm12b	100	85.204	MGP_SPRETEiJ_G0018084	Lsm12	100	85.204	Mus_spretus
ENSAPEG00000002252	lsm12b	100	86.224	ENSMLUG00000006391	LSM12	100	86.224	Myotis_lucifugus
ENSAPEG00000002252	lsm12b	100	59.113	ENSNGAG00000015429	-	100	59.113	Nannospalax_galili
ENSAPEG00000002252	lsm12b	100	85.714	ENSNGAG00000001870	Lsm12	100	85.714	Nannospalax_galili
ENSAPEG00000002252	lsm12b	100	98.469	ENSNBRG00000006266	lsm12b	100	98.469	Neolamprologus_brichardi
ENSAPEG00000002252	lsm12b	100	85.714	ENSNLEG00000005580	-	100	85.714	Nomascus_leucogenys
ENSAPEG00000002252	lsm12b	88	85.542	ENSMEUG00000007501	-	100	85.542	Notamacropus_eugenii
ENSAPEG00000002252	lsm12b	100	85.714	ENSOPRG00000008552	LSM12	100	85.714	Ochotona_princeps
ENSAPEG00000002252	lsm12b	100	78.061	ENSODEG00000007886	-	74	78.061	Octodon_degus
ENSAPEG00000002252	lsm12b	99	85.567	ENSODEG00000017998	-	99	85.567	Octodon_degus
ENSAPEG00000002252	lsm12b	100	98.469	ENSONIG00000007933	lsm12b	100	98.469	Oreochromis_niloticus
ENSAPEG00000002252	lsm12b	99	79.487	ENSOCUG00000024823	-	100	79.487	Oryctolagus_cuniculus
ENSAPEG00000002252	lsm12b	99	80.513	ENSOCUG00000021254	-	100	80.513	Oryctolagus_cuniculus
ENSAPEG00000002252	lsm12b	100	83.920	ENSOCUG00000008566	-	100	83.920	Oryctolagus_cuniculus
ENSAPEG00000002252	lsm12b	99	80.000	ENSOCUG00000027889	-	100	80.000	Oryctolagus_cuniculus
ENSAPEG00000002252	lsm12b	100	97.959	ENSORLG00000011310	lsm12b	100	97.959	Oryzias_latipes
ENSAPEG00000002252	lsm12b	100	97.959	ENSORLG00020002060	lsm12b	92	97.959	Oryzias_latipes_hni
ENSAPEG00000002252	lsm12b	100	97.959	ENSORLG00015001647	lsm12b	92	97.959	Oryzias_latipes_hsok
ENSAPEG00000002252	lsm12b	100	98.980	ENSOMEG00000006184	lsm12b	92	98.980	Oryzias_melastigma
ENSAPEG00000002252	lsm12b	100	86.224	ENSOGAG00000010489	LSM12	100	86.224	Otolemur_garnettii
ENSAPEG00000002252	lsm12b	100	82.673	ENSOARG00000006589	LSM12	100	82.673	Ovis_aries
ENSAPEG00000002252	lsm12b	100	76.020	ENSPPAG00000034974	-	100	76.020	Pan_paniscus
ENSAPEG00000002252	lsm12b	100	85.714	ENSPPRG00000023420	LSM12	100	85.714	Panthera_pardus
ENSAPEG00000002252	lsm12b	78	85.621	ENSPTIG00000012704	-	82	85.621	Panthera_tigris_altaica
ENSAPEG00000002252	lsm12b	72	84.545	ENSPTIG00000014850	-	100	84.545	Panthera_tigris_altaica
ENSAPEG00000002252	lsm12b	100	85.714	ENSPTRG00000009261	LSM12	100	85.714	Pan_troglodytes
ENSAPEG00000002252	lsm12b	100	85.714	ENSPANG00000021315	-	100	85.714	Papio_anubis
ENSAPEG00000002252	lsm12b	100	93.878	ENSPKIG00000021058	lsm12b	100	93.878	Paramormyrops_kingsleyae
ENSAPEG00000002252	lsm12b	100	84.184	ENSPKIG00000017932	-	100	84.184	Paramormyrops_kingsleyae
ENSAPEG00000002252	lsm12b	100	98.469	ENSPMGG00000021344	lsm12b	100	98.469	Periophthalmus_magnuspinnatus
ENSAPEG00000002252	lsm12b	100	85.714	ENSPEMG00000012199	Lsm12	100	85.714	Peromyscus_maniculatus_bairdii
ENSAPEG00000002252	lsm12b	89	68.000	ENSPMAG00000005461	lsm12a	99	68.000	Petromyzon_marinus
ENSAPEG00000002252	lsm12b	100	85.714	ENSPCIG00000020244	LSM12	100	85.714	Phascolarctos_cinereus
ENSAPEG00000002252	lsm12b	100	96.939	ENSPFOG00000015930	lsm12b	100	96.939	Poecilia_formosa
ENSAPEG00000002252	lsm12b	100	96.939	ENSPLAG00000021089	lsm12b	100	96.939	Poecilia_latipinna
ENSAPEG00000002252	lsm12b	100	96.939	ENSPMEG00000012961	lsm12b	100	96.939	Poecilia_mexicana
ENSAPEG00000002252	lsm12b	87	98.246	ENSPREG00000010236	lsm12b	95	98.246	Poecilia_reticulata
ENSAPEG00000002252	lsm12b	100	85.714	ENSPPYG00000008344	LSM12	100	85.714	Pongo_abelii
ENSAPEG00000002252	lsm12b	85	86.164	ENSPCAG00000008790	LSM12	100	86.164	Procavia_capensis
ENSAPEG00000002252	lsm12b	100	85.714	ENSPCOG00000027951	LSM12	100	85.714	Propithecus_coquereli
ENSAPEG00000002252	lsm12b	100	86.224	ENSPVAG00000013706	LSM12	100	86.224	Pteropus_vampyrus
ENSAPEG00000002252	lsm12b	100	98.469	ENSPNYG00000003386	lsm12b	100	98.469	Pundamilia_nyererei
ENSAPEG00000002252	lsm12b	100	94.898	ENSPNAG00000004186	lsm12b	100	94.898	Pygocentrus_nattereri
ENSAPEG00000002252	lsm12b	100	85.204	ENSPNAG00000018435	lsm12a	100	85.204	Pygocentrus_nattereri
ENSAPEG00000002252	lsm12b	100	85.714	ENSRNOG00000020894	Lsm12	100	85.714	Rattus_norvegicus
ENSAPEG00000002252	lsm12b	100	85.714	ENSRBIG00000027910	LSM12	100	85.714	Rhinopithecus_bieti
ENSAPEG00000002252	lsm12b	99	53.608	ENSRROG00000000537	-	99	53.608	Rhinopithecus_roxellana
ENSAPEG00000002252	lsm12b	100	85.714	ENSRROG00000045530	-	100	85.714	Rhinopithecus_roxellana
ENSAPEG00000002252	lsm12b	100	85.714	ENSSBOG00000025310	LSM12	100	85.714	Saimiri_boliviensis_boliviensis
ENSAPEG00000002252	lsm12b	81	84.177	ENSSHAG00000014914	LSM12	100	84.177	Sarcophilus_harrisii
ENSAPEG00000002252	lsm12b	100	94.388	ENSSFOG00015020392	lsm12a	100	94.388	Scleropages_formosus
ENSAPEG00000002252	lsm12b	100	95.408	ENSSFOG00015009612	lsm12	100	95.408	Scleropages_formosus
ENSAPEG00000002252	lsm12b	100	99.490	ENSSMAG00000008089	lsm12b	100	99.490	Scophthalmus_maximus
ENSAPEG00000002252	lsm12b	100	99.490	ENSSDUG00000012711	lsm12b	100	99.490	Seriola_dumerili
ENSAPEG00000002252	lsm12b	100	99.490	ENSSLDG00000007404	lsm12b	100	99.490	Seriola_lalandi_dorsalis
ENSAPEG00000002252	lsm12b	78	84.967	ENSSARG00000005537	LSM12	100	84.967	Sorex_araneus
ENSAPEG00000002252	lsm12b	100	86.224	ENSSPUG00000011984	LSM12	100	86.224	Sphenodon_punctatus
ENSAPEG00000002252	lsm12b	100	100.000	ENSSPAG00000017058	lsm12b	100	100.000	Stegastes_partitus
ENSAPEG00000002252	lsm12b	100	85.714	ENSSSCG00000032394	LSM12	100	85.714	Sus_scrofa
ENSAPEG00000002252	lsm12b	100	98.469	ENSTRUG00000007121	lsm12b	100	98.469	Takifugu_rubripes
ENSAPEG00000002252	lsm12b	100	97.449	ENSTNIG00000014436	lsm12b	100	97.449	Tetraodon_nigroviridis
ENSAPEG00000002252	lsm12b	100	85.204	ENSTBEG00000012523	-	100	85.204	Tupaia_belangeri
ENSAPEG00000002252	lsm12b	100	83.163	ENSTBEG00000012392	-	100	83.163	Tupaia_belangeri
ENSAPEG00000002252	lsm12b	100	85.714	ENSTTRG00000010433	LSM12	100	85.714	Tursiops_truncatus
ENSAPEG00000002252	lsm12b	100	85.714	ENSUAMG00000006313	LSM12	100	85.714	Ursus_americanus
ENSAPEG00000002252	lsm12b	81	82.911	ENSUMAG00000012987	LSM12	90	82.911	Ursus_maritimus
ENSAPEG00000002252	lsm12b	100	81.122	ENSVPAG00000011145	LSM12	100	81.122	Vicugna_pacos
ENSAPEG00000002252	lsm12b	100	85.714	ENSVVUG00000017581	LSM12	100	85.714	Vulpes_vulpes
ENSAPEG00000002252	lsm12b	82	61.250	ENSXETG00000003371	lsm12	77	61.250	Xenopus_tropicalis
ENSAPEG00000002252	lsm12b	100	97.959	ENSXCOG00000003994	lsm12b	100	97.959	Xiphophorus_couchianus
ENSAPEG00000002252	lsm12b	100	97.959	ENSXMAG00000020950	lsm12b	100	97.959	Xiphophorus_maculatus