EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSAPEG00000005545 (Gene tree)
Gene ID
-
Gene Symbol
upf3b
Alias
zgc:174674|zgc:66390
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Amphiprion_percula
Status
putative
Strand
Minus strand
Length
3813 bases
Position
chr13:20766433-20770245
Accession
ZDB-GENE-040426-1630
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAPEP00000007724Smg4_UPF3PF03467.156.6e-5411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAPET00000007948-2613-ENSAPEP00000007724457 (aa)--
Gene Model
Click here to download ENSAPEG00000005545's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000005545's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAPEG00000005545upf3b8850.360ENSG00000169062UPF3A5062.400Homo_sapiens
ENSAPEG00000005545upf3b9953.125ENSG00000125351UPF3B9669.048Homo_sapiens
ENSAPEG00000005545upf3b10096.937ENSAPOG00000012775upf3b10096.937Acanthochromis_polyacanthus
ENSAPEG00000005545upf3b9657.734ENSAMEG00000000163UPF3B9657.734Ailuropoda_melanoleuca
ENSAPEG00000005545upf3b10084.233ENSACIG00000013582upf3b10085.313Amphilophus_citrinellus
ENSAPEG00000005545upf3b10097.374ENSAOCG00000000706upf3b10097.374Amphiprion_ocellaris
ENSAPEG00000005545upf3b10086.393ENSATEG00000018742upf3b10086.393Anabas_testudineus
ENSAPEG00000005545upf3b8950.843ENSACAG00000001540UPF3A6756.507Anolis_carolinensis
ENSAPEG00000005545upf3b9860.730ENSACAG00000003625UPF3B9860.086Anolis_carolinensis
ENSAPEG00000005545upf3b9658.134ENSANAG00000021894-9768.900Aotus_nancymaae
ENSAPEG00000005545upf3b10053.926ENSANAG00000025598-10051.983Aotus_nancymaae
ENSAPEG00000005545upf3b10084.532ENSACLG00000001649upf3b10084.967Astatotilapia_calliptera
ENSAPEG00000005545upf3b9346.744ENSAMXG00000002608upf3a5367.200Astyanax_mexicanus
ENSAPEG00000005545upf3b6683.012ENSAMXG00000000199upf3b10083.012Astyanax_mexicanus
ENSAPEG00000005545upf3b5668.613ENSBTAG00000035615UPF3B6868.720Bos_taurus
ENSAPEG00000005545upf3b9048.095ENSCJAG00000019102UPF3A5360.153Callithrix_jacchus
ENSAPEG00000005545upf3b9657.734ENSCJAG00000004975UPF3B9768.421Callithrix_jacchus
ENSAPEG00000005545upf3b9657.952ENSCAFG00000018426UPF3B9857.734Canis_familiaris
ENSAPEG00000005545upf3b9655.338ENSCAFG00020004074UPF3B9655.556Canis_lupus_dingo
ENSAPEG00000005545upf3b9240.898ENSCHIG00000011454-5147.881Capra_hircus
ENSAPEG00000005545upf3b9656.394ENSCHIG00000018011-9853.556Capra_hircus
ENSAPEG00000005545upf3b9656.604ENSCHIG00000000247-9653.766Capra_hircus
ENSAPEG00000005545upf3b9048.113ENSCHIG00000008682UPF3A5159.023Capra_hircus
ENSAPEG00000005545upf3b9658.134ENSTSYG00000014690UPF3B9663.721Carlito_syrichta
ENSAPEG00000005545upf3b5462.948ENSCPOG00000006824UPF3A5657.371Cavia_porcellus
ENSAPEG00000005545upf3b9340.045ENSCCAG00000029813-6955.665Cebus_capucinus
ENSAPEG00000005545upf3b9049.647ENSCCAG00000018406UPF3A5360.153Cebus_capucinus
ENSAPEG00000005545upf3b9953.125ENSCATG00000017506UPF3B9768.900Cercocebus_atys
ENSAPEG00000005545upf3b9050.356ENSCATG00000029733UPF3A5262.800Cercocebus_atys
ENSAPEG00000005545upf3b9659.259ENSCLAG00000003260UPF3B9659.259Chinchilla_lanigera
ENSAPEG00000005545upf3b10051.515ENSCSAG00000018348UPF3B10055.263Chlorocebus_sabaeus
ENSAPEG00000005545upf3b9049.883ENSCSAG00000017388UPF3A5262.055Chlorocebus_sabaeus
ENSAPEG00000005545upf3b9459.729ENSCPBG00000020685UPF3B9358.957Chrysemys_picta_bellii
ENSAPEG00000005545upf3b5668.382ENSCANG00000029220UPF3B6668.720Colobus_angolensis_palliatus
ENSAPEG00000005545upf3b9454.566ENSCGRG00001006858-9454.810Cricetulus_griseus_chok1gshd
ENSAPEG00000005545upf3b6957.530ENSCGRG00001013643-9255.556Cricetulus_griseus_chok1gshd
ENSAPEG00000005545upf3b8658.081ENSCGRG00000007627Upf3b9358.376Cricetulus_griseus_crigri
ENSAPEG00000005545upf3b9975.000ENSCSEG00000002046upf3b9975.891Cynoglossus_semilaevis
ENSAPEG00000005545upf3b10081.223ENSCVAG00000005030upf3b10081.004Cyprinodon_variegatus
ENSAPEG00000005545upf3b9550.223ENSDARG00000069297upf3a9350.331Danio_rerio
ENSAPEG00000005545upf3b9473.853ENSDARG00000000489upf3b9971.245Danio_rerio
ENSAPEG00000005545upf3b9656.421ENSDNOG00000008665UPF3B9656.329Dasypus_novemcinctus
ENSAPEG00000005545upf3b7751.667ENSDNOG00000034391UPF3A5457.600Dasypus_novemcinctus
ENSAPEG00000005545upf3b9656.863ENSDORG00000006077Upf3b9357.494Dipodomys_ordii
ENSAPEG00000005545upf3b9340.139ENSETEG00000010110UPF3A5051.600Echinops_telfairi
ENSAPEG00000005545upf3b9655.991ENSEASG00005012919UPF3B9656.863Equus_asinus_asinus
ENSAPEG00000005545upf3b9449.091ENSEASG00005021884UPF3A5158.800Equus_asinus_asinus
ENSAPEG00000005545upf3b9449.887ENSECAG00000017141UPF3A5158.800Equus_caballus
ENSAPEG00000005545upf3b9655.991ENSECAG00000016947UPF3B9656.863Equus_caballus
ENSAPEG00000005545upf3b9971.488ENSELUG00000020389upf3b10074.227Esox_lucius
ENSAPEG00000005545upf3b9658.190ENSFCAG00000004388UPF3B10056.549Felis_catus
ENSAPEG00000005545upf3b9647.875ENSFCAG00000014602UPF3A5257.088Felis_catus
ENSAPEG00000005545upf3b9956.151ENSFALG00000001569UPF3B9955.754Ficedula_albicollis
ENSAPEG00000005545upf3b9757.883ENSFDAG00000018869UPF3B9657.826Fukomys_damarensis
ENSAPEG00000005545upf3b10080.652ENSFHEG00000017895upf3b10079.565Fundulus_heteroclitus
ENSAPEG00000005545upf3b10068.710ENSGMOG00000001621upf3b10068.790Gadus_morhua
ENSAPEG00000005545upf3b9957.917ENSGALG00000008618UPF3B9958.542Gallus_gallus
ENSAPEG00000005545upf3b10080.568ENSGAFG00000000829upf3b10081.004Gambusia_affinis
ENSAPEG00000005545upf3b10078.710ENSGACG00000017435upf3b9489.844Gasterosteus_aculeatus
ENSAPEG00000005545upf3b9961.489ENSGAGG00000001219UPF3B9961.064Gopherus_agassizii
ENSAPEG00000005545upf3b9953.125ENSGGOG00000023995UPF3B10056.757Gorilla_gorilla
ENSAPEG00000005545upf3b8849.880ENSGGOG00000015428UPF3A5261.154Gorilla_gorilla
ENSAPEG00000005545upf3b10084.096ENSHBUG00000017393upf3b10084.532Haplochromis_burtoni
ENSAPEG00000005545upf3b9657.734ENSHGLG00000019582-9657.734Heterocephalus_glaber_female
ENSAPEG00000005545upf3b7057.143ENSHGLG00000011189-8156.686Heterocephalus_glaber_female
ENSAPEG00000005545upf3b5459.600ENSHGLG00000001544UPF3A5758.800Heterocephalus_glaber_female
ENSAPEG00000005545upf3b9654.248ENSHGLG00100002042-9654.031Heterocephalus_glaber_male
ENSAPEG00000005545upf3b7057.143ENSHGLG00100001889-8256.686Heterocephalus_glaber_male
ENSAPEG00000005545upf3b5459.600ENSHGLG00100013244UPF3A5758.800Heterocephalus_glaber_male
ENSAPEG00000005545upf3b10073.448ENSHCOG00000017004upf3b10072.414Hippocampus_comes
ENSAPEG00000005545upf3b9350.233ENSHCOG00000013985upf3a6973.333Hippocampus_comes
ENSAPEG00000005545upf3b10072.688ENSIPUG00000019249upf3b10072.258Ictalurus_punctatus
ENSAPEG00000005545upf3b9944.563ENSIPUG00000023450upf3a6161.246Ictalurus_punctatus
ENSAPEG00000005545upf3b9657.734ENSSTOG00000001101UPF3B9856.842Ictidomys_tridecemlineatus
ENSAPEG00000005545upf3b10054.071ENSJJAG00000000053Upf3b10054.071Jaculus_jaculus
ENSAPEG00000005545upf3b10084.464ENSKMAG00000020300upf3b10084.464Kryptolebias_marmoratus
ENSAPEG00000005545upf3b6089.455ENSLBEG00000028689upf3b6485.862Labrus_bergylta
ENSAPEG00000005545upf3b10061.864ENSLACG00000008691UPF3B10060.208Latimeria_chalumnae
ENSAPEG00000005545upf3b9155.529ENSLOCG00000002665upf3a8752.392Lepisosteus_oculatus
ENSAPEG00000005545upf3b6875.478ENSLOCG00000015238upf3b10063.656Lepisosteus_oculatus
ENSAPEG00000005545upf3b9956.965ENSLAFG00000001267UPF3B10056.639Loxodonta_africana
ENSAPEG00000005545upf3b9953.125ENSMFAG00000045414UPF3B9768.900Macaca_fascicularis
ENSAPEG00000005545upf3b9953.125ENSMMUG00000020222UPF3B9768.900Macaca_mulatta
ENSAPEG00000005545upf3b8551.134ENSMMUG00000007449UPF3A5263.223Macaca_mulatta
ENSAPEG00000005545upf3b9953.125ENSMNEG00000039794UPF3B9768.900Macaca_nemestrina
ENSAPEG00000005545upf3b9953.125ENSMLEG00000010999UPF3B9768.900Mandrillus_leucophaeus
ENSAPEG00000005545upf3b8950.120ENSMLEG00000014726UPF3A5662.963Mandrillus_leucophaeus
ENSAPEG00000005545upf3b9350.889ENSMAMG00000018364upf3a8450.580Mastacembelus_armatus
ENSAPEG00000005545upf3b10084.749ENSMZEG00005007871upf3b10085.185Maylandia_zebra
ENSAPEG00000005545upf3b8358.612ENSMGAG00000007728UPF3B9958.869Meleagris_gallopavo
ENSAPEG00000005545upf3b8650.985ENSMGAG00000014837UPF3A5862.656Meleagris_gallopavo
ENSAPEG00000005545upf3b10052.183ENSMAUG00000008705Upf3b10052.092Mesocricetus_auratus
ENSAPEG00000005545upf3b5668.613ENSMICG00000001743UPF3B6668.720Microcebus_murinus
ENSAPEG00000005545upf3b9951.423ENSMOCG00000017893Upf3b10052.236Microtus_ochrogaster
ENSAPEG00000005545upf3b10081.046ENSMMOG00000004183upf3b10080.828Mola_mola
ENSAPEG00000005545upf3b8962.255ENSMODG00000010232UPF3B9462.408Monodelphis_domestica
ENSAPEG00000005545upf3b9151.294ENSMODG00000003159UPF3A6757.432Monodelphis_domestica
ENSAPEG00000005545upf3b10081.720ENSMALG00000008042upf3b10082.796Monopterus_albus
ENSAPEG00000005545upf3b5463.600MGP_CAROLIEiJ_G0030848Upf3a5863.600Mus_caroli
ENSAPEG00000005545upf3b9454.566MGP_CAROLIEiJ_G0032999Upf3b9354.810Mus_caroli
ENSAPEG00000005545upf3b9454.788ENSMUSG00000036572Upf3b9355.034Mus_musculus
ENSAPEG00000005545upf3b7850.276ENSMUSG00000038398Upf3a5763.200Mus_musculus
ENSAPEG00000005545upf3b9454.566MGP_PahariEiJ_G0031543Upf3b9354.810Mus_pahari
ENSAPEG00000005545upf3b7850.552MGP_PahariEiJ_G0021311Upf3a5763.600Mus_pahari
ENSAPEG00000005545upf3b9454.788MGP_SPRETEiJ_G0034152Upf3b9355.034Mus_spretus
ENSAPEG00000005545upf3b7850.556MGP_SPRETEiJ_G0031958Upf3a5763.200Mus_spretus
ENSAPEG00000005545upf3b9657.701ENSMPUG00000001531UPF3B9857.516Mustela_putorius_furo
ENSAPEG00000005545upf3b10057.588ENSMLUG00000010821UPF3B10056.994Myotis_lucifugus
ENSAPEG00000005545upf3b8747.291ENSMLUG00000015905UPF3A5658.943Myotis_lucifugus
ENSAPEG00000005545upf3b9953.333ENSNGAG00000008231Upf3b10053.112Nannospalax_galili
ENSAPEG00000005545upf3b9555.204ENSNLEG00000014897UPF3B9259.276Nomascus_leucogenys
ENSAPEG00000005545upf3b8849.395ENSNLEG00000007563UPF3A5062.000Nomascus_leucogenys
ENSAPEG00000005545upf3b9657.081ENSODEG00000002186-9656.427Octodon_degus
ENSAPEG00000005545upf3b10084.483ENSONIG00000002536upf3b10085.129Oreochromis_niloticus
ENSAPEG00000005545upf3b8858.010ENSOANG00000002594-9557.971Ornithorhynchus_anatinus
ENSAPEG00000005545upf3b7546.705ENSOANG00000006985-5854.065Ornithorhynchus_anatinus
ENSAPEG00000005545upf3b9955.354ENSOCUG00000010213UPF3B10054.949Oryctolagus_cuniculus
ENSAPEG00000005545upf3b10077.899ENSORLG00000001026upf3b10077.899Oryzias_latipes
ENSAPEG00000005545upf3b9752.043ENSORLG00000010911upf3a6958.912Oryzias_latipes
ENSAPEG00000005545upf3b10077.462ENSORLG00020003758upf3b10077.462Oryzias_latipes_hni
ENSAPEG00000005545upf3b9750.216ENSORLG00020014317upf3a6958.485Oryzias_latipes_hni
ENSAPEG00000005545upf3b10077.243ENSORLG00015012954upf3b10077.243Oryzias_latipes_hsok
ENSAPEG00000005545upf3b9349.306ENSOMEG00000014425upf3a6462.295Oryzias_melastigma
ENSAPEG00000005545upf3b10079.650ENSOMEG00000014736upf3b10079.650Oryzias_melastigma
ENSAPEG00000005545upf3b9656.087ENSOGAG00000033003-7460.058Otolemur_garnettii
ENSAPEG00000005545upf3b6464.725ENSOGAG00000004643-9657.484Otolemur_garnettii
ENSAPEG00000005545upf3b9148.946ENSOARG00000009004UPF3A5459.701Ovis_aries
ENSAPEG00000005545upf3b9656.250ENSOARG00000016051-9653.430Ovis_aries
ENSAPEG00000005545upf3b9046.394ENSOARG00000007869-7146.801Ovis_aries
ENSAPEG00000005545upf3b8849.637ENSPPAG00000042267UPF3A5360.536Pan_paniscus
ENSAPEG00000005545upf3b9953.125ENSPPAG00000040390UPF3B10056.757Pan_paniscus
ENSAPEG00000005545upf3b9648.884ENSPPRG00000025062UPF3A5257.088Panthera_pardus
ENSAPEG00000005545upf3b9658.190ENSPPRG00000023536UPF3B10056.549Panthera_pardus
ENSAPEG00000005545upf3b9653.669ENSPTIG00000015264UPF3B10052.869Panthera_tigris_altaica
ENSAPEG00000005545upf3b9953.125ENSPTRG00000022228UPF3B10056.757Pan_troglodytes
ENSAPEG00000005545upf3b8850.120ENSPTRG00000006073UPF3A5360.536Pan_troglodytes
ENSAPEG00000005545upf3b9150.236ENSPANG00000004346UPF3A5262.400Papio_anubis
ENSAPEG00000005545upf3b9953.125ENSPANG00000000900UPF3B9768.900Papio_anubis
ENSAPEG00000005545upf3b9969.264ENSPKIG00000019226upf3b9385.417Paramormyrops_kingsleyae
ENSAPEG00000005545upf3b8852.000ENSPSIG00000007468UPF3A6261.364Pelodiscus_sinensis
ENSAPEG00000005545upf3b5666.023ENSPSIG00000005833UPF3B8868.526Pelodiscus_sinensis
ENSAPEG00000005545upf3b5687.891ENSPMGG00000016067upf3b9586.590Periophthalmus_magnuspinnatus
ENSAPEG00000005545upf3b7751.695ENSPEMG00000019968-5763.200Peromyscus_maniculatus_bairdii
ENSAPEG00000005545upf3b9455.022ENSPEMG00000012352Upf3b9354.464Peromyscus_maniculatus_bairdii
ENSAPEG00000005545upf3b8960.539ENSPCIG00000028914UPF3B8560.539Phascolarctos_cinereus
ENSAPEG00000005545upf3b9339.957ENSPFOG00000013222upf3a5267.200Poecilia_formosa
ENSAPEG00000005545upf3b10080.786ENSPLAG00000005105upf3b10081.223Poecilia_latipinna
ENSAPEG00000005545upf3b10080.786ENSPLAG00000019922upf3b10081.223Poecilia_latipinna
ENSAPEG00000005545upf3b9349.428ENSPLAG00000011960upf3a5479.570Poecilia_latipinna
ENSAPEG00000005545upf3b10080.786ENSPMEG00000023532upf3b10081.223Poecilia_mexicana
ENSAPEG00000005545upf3b5668.132ENSPPYG00000020675-6368.720Pongo_abelii
ENSAPEG00000005545upf3b8849.153ENSPPYG00000005536UPF3A5062.000Pongo_abelii
ENSAPEG00000005545upf3b5453.200ENSPCAG00000013124UPF3A5047.600Procavia_capensis
ENSAPEG00000005545upf3b9855.301ENSPCAG00000009464UPF3B9655.907Procavia_capensis
ENSAPEG00000005545upf3b9658.190ENSPCOG00000021960UPF3B9357.333Propithecus_coquereli
ENSAPEG00000005545upf3b9246.404ENSPVAG00000005656UPF3A5055.600Pteropus_vampyrus
ENSAPEG00000005545upf3b9647.679ENSPVAG00000014075UPF3B7351.268Pteropus_vampyrus
ENSAPEG00000005545upf3b10085.120ENSPNYG00000009846upf3b10085.120Pundamilia_nyererei
ENSAPEG00000005545upf3b10072.591ENSPNAG00000021528upf3b10084.884Pygocentrus_nattereri
ENSAPEG00000005545upf3b9345.349ENSPNAG00000019532upf3a9249.115Pygocentrus_nattereri
ENSAPEG00000005545upf3b9454.788ENSRNOG00000039994Upf3b9355.034Rattus_norvegicus
ENSAPEG00000005545upf3b8452.417ENSRBIG00000037219UPF3B10056.853Rhinopithecus_bieti
ENSAPEG00000005545upf3b8850.000ENSRBIG00000034007UPF3A5661.508Rhinopithecus_bieti
ENSAPEG00000005545upf3b9953.125ENSRROG00000041031UPF3B9768.900Rhinopithecus_roxellana
ENSAPEG00000005545upf3b8849.879ENSRROG00000012212UPF3A5063.223Rhinopithecus_roxellana
ENSAPEG00000005545upf3b9657.952ENSSBOG00000019740UPF3B9969.378Saimiri_boliviensis_boliviensis
ENSAPEG00000005545upf3b9360.648ENSSHAG00000008634UPF3B9957.620Sarcophilus_harrisii
ENSAPEG00000005545upf3b9152.204ENSSHAG00000009895UPF3A6856.902Sarcophilus_harrisii
ENSAPEG00000005545upf3b9969.783ENSSFOG00015005614upf3b10069.565Scleropages_formosus
ENSAPEG00000005545upf3b10081.116ENSSMAG00000012913upf3b10092.188Scophthalmus_maximus
ENSAPEG00000005545upf3b9345.497ENSSDUG00000009680upf3a5779.570Seriola_dumerili
ENSAPEG00000005545upf3b10085.466ENSSDUG00000005682upf3b10086.768Seriola_dumerili
ENSAPEG00000005545upf3b10086.551ENSSLDG00000003130upf3b10086.985Seriola_lalandi_dorsalis
ENSAPEG00000005545upf3b9253.318ENSSARG00000004147UPF3B10053.986Sorex_araneus
ENSAPEG00000005545upf3b9956.531ENSSPUG00000013082UPF3B9956.237Sphenodon_punctatus
ENSAPEG00000005545upf3b9993.392ENSSPAG00000009989upf3b9993.392Stegastes_partitus
ENSAPEG00000005545upf3b8943.720ENSSSCG00000024679UPF3A5961.600Sus_scrofa
ENSAPEG00000005545upf3b9657.602ENSSSCG00000012617UPF3B10055.992Sus_scrofa
ENSAPEG00000005545upf3b9260.280ENSTGUG00000003413UPF3B9960.280Taeniopygia_guttata
ENSAPEG00000005545upf3b8753.902ENSTGUG00000009493UPF3A9950.243Taeniopygia_guttata
ENSAPEG00000005545upf3b10078.214ENSTRUG00000010645upf3b10077.560Takifugu_rubripes
ENSAPEG00000005545upf3b9449.886ENSTRUG00000012730upf3a6459.609Takifugu_rubripes
ENSAPEG00000005545upf3b10069.264ENSTNIG00000015763upf3b10066.304Tetraodon_nigroviridis
ENSAPEG00000005545upf3b8947.188ENSTNIG00000014973upf3a6552.416Tetraodon_nigroviridis
ENSAPEG00000005545upf3b9448.491ENSTBEG00000003229UPF3B9348.156Tupaia_belangeri
ENSAPEG00000005545upf3b9655.556ENSUAMG00000024565UPF3B9655.556Ursus_americanus
ENSAPEG00000005545upf3b8954.258ENSUMAG00000002150UPF3B8756.448Ursus_maritimus
ENSAPEG00000005545upf3b8457.538ENSVPAG00000009971UPF3B9557.107Vicugna_pacos
ENSAPEG00000005545upf3b9655.120ENSVVUG00000011594UPF3B9768.900Vulpes_vulpes
ENSAPEG00000005545upf3b9453.636ENSXETG00000007440upf3b8577.551Xenopus_tropicalis
ENSAPEG00000005545upf3b10074.017ENSXCOG00000016586upf3b9889.286Xiphophorus_couchianus
ENSAPEG00000005545upf3b10080.349ENSXMAG00000013680upf3b10080.786Xiphophorus_maculatus

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