EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPEG00000006219 (Gene tree)
Gene ID: -
Gene Symbol: snrnp70
Alias: U1 small ribonucleoprotein 70kd|snrp70|wu:fc20b04|zgc:136450
Full Name: small nuclear ribonucleoprotein 70 (U1)
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Plus strand
Length: 7804 bases
Position: chr14:301631-309434
Accession: ZDB-GENE-040825-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000008625	RRM_1	PF00076.22	1.6e-19	1	1
ENSAPEP00000008647	RRM_1	PF00076.22	7.7e-09	1	1
ENSAPEP00000008647	U1snRNP70_N	PF12220.8	3.9e-25	1	1
ENSAPEP00000008625	U1snRNP70_N	PF12220.8	4.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000008891	-	1272	-	ENSAPEP00000008647	423 (aa)	-	-
ENSAPET00000008869	-	1828	-	ENSAPEP00000008625	470 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000006219's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000006219's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000006219	snrnp70	100	85.021	ENSACIG00000017909	snrnp70	100	85.957	Amphilophus_citrinellus
ENSAPEG00000006219	snrnp70	100	98.947	ENSAOCG00000011672	snrnp70	100	98.947	Amphiprion_ocellaris
ENSAPEG00000006219	snrnp70	52	48.016	WBGene00004390	rnp-7	57	51.579	Caenorhabditis_elegans
ENSAPEG00000006219	snrnp70	52	71.849	ENSCANG00000036607	SNRNP70	90	92.825	Colobus_angolensis_palliatus
ENSAPEG00000006219	snrnp70	100	85.835	ENSHBUG00000018856	snrnp70	100	80.892	Haplochromis_burtoni
ENSAPEG00000006219	snrnp70	100	82.180	ENSMAMG00000004556	snrnp70	100	83.932	Mastacembelus_armatus
ENSAPEG00000006219	snrnp70	100	83.298	ENSMZEG00005022849	snrnp70	100	79.830	Maylandia_zebra
ENSAPEG00000006219	snrnp70	100	69.038	ENSMMOG00000005467	snrnp70	72	85.204	Mola_mola
ENSAPEG00000006219	snrnp70	74	88.252	ENSMALG00000002275	snrnp70	90	83.224	Monopterus_albus
ENSAPEG00000006219	snrnp70	100	82.839	ENSOMEG00000013002	snrnp70	100	82.979	Oryzias_melastigma
ENSAPEG00000006219	snrnp70	57	82.463	ENSPPAG00000035067	SNRNP70	99	89.634	Pan_paniscus
ENSAPEG00000006219	snrnp70	55	69.636	ENSPTRG00000011277	SNRNP70	99	89.634	Pan_troglodytes
ENSAPEG00000006219	snrnp70	57	58.103	ENSPSIG00000015251	SNRNP70	88	81.250	Pelodiscus_sinensis
ENSAPEG00000006219	snrnp70	57	63.095	ENSPCOG00000023103	SNRNP70	79	84.305	Propithecus_coquereli
ENSAPEG00000006219	snrnp70	100	85.412	ENSPNYG00000003258	snrnp70	100	80.467	Pundamilia_nyererei
ENSAPEG00000006219	snrnp70	100	73.517	ENSSMAG00000013978	snrnp70	100	71.167	Scophthalmus_maximus
ENSAPEG00000006219	snrnp70	52	87.600	ENSSPUG00000016621	SNRNP70	52	94.144	Sphenodon_punctatus
ENSAPEG00000006219	snrnp70	100	63.774	ENSXCOG00000008991	snrnp70	100	69.197	Xiphophorus_couchianus
ENSAPEG00000006219	snrnp70	100	63.557	ENSXMAG00000012789	snrnp70	100	69.414	Xiphophorus_maculatus