EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPEG00000006238 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Minus strand
Length: 4118 bases
Position: chr2:20082678-20086795
Accession: ZDB-GENE-040426-1652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000008637	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000008881	-	1463	-	ENSAPEP00000008637	149 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000006238's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000006238's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPEG00000006238	lsm4	65	32.000	ENSAPEG00000020375	si:ch73-14h10.2	87	32.000
ENSAPEG00000006238	lsm4	52	33.766	ENSAPEG00000021845	-	60	34.667
ENSAPEG00000006238	lsm4	72	34.259	ENSAPEG00000006260	-	94	32.039
ENSAPEG00000006238	lsm4	52	33.766	ENSAPEG00000021851	LSM10	57	34.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000006238	lsm4	59	98.864	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSAPEG00000006238	lsm4	100	98.675	ENSAPOG00000005643	lsm4	100	98.675	Acanthochromis_polyacanthus
ENSAPEG00000006238	lsm4	58	98.851	ENSAMEG00000011162	LSM4	67	96.939	Ailuropoda_melanoleuca
ENSAPEG00000006238	lsm4	100	99.329	ENSAOCG00000006414	lsm4	100	99.329	Amphiprion_ocellaris
ENSAPEG00000006238	lsm4	100	93.421	ENSATEG00000016559	lsm4	100	94.079	Anabas_testudineus
ENSAPEG00000006238	lsm4	59	98.864	ENSANAG00000034659	LSM4	99	75.000	Aotus_nancymaae
ENSAPEG00000006238	lsm4	100	95.302	ENSACLG00000022738	lsm4	100	95.302	Astatotilapia_calliptera
ENSAPEG00000006238	lsm4	100	86.667	ENSAMXG00000016932	lsm4	100	86.000	Astyanax_mexicanus
ENSAPEG00000006238	lsm4	59	98.864	ENSBTAG00000008578	LSM4	99	75.000	Bos_taurus
ENSAPEG00000006238	lsm4	56	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSAPEG00000006238	lsm4	59	98.864	ENSCJAG00000014171	LSM4	99	75.000	Callithrix_jacchus
ENSAPEG00000006238	lsm4	59	98.864	ENSCAFG00000014900	LSM4	90	75.000	Canis_familiaris
ENSAPEG00000006238	lsm4	59	98.864	ENSCAFG00020012137	LSM4	99	75.000	Canis_lupus_dingo
ENSAPEG00000006238	lsm4	58	98.851	ENSCHIG00000010928	LSM4	90	74.825	Capra_hircus
ENSAPEG00000006238	lsm4	59	97.727	ENSTSYG00000030906	LSM4	99	74.306	Carlito_syrichta
ENSAPEG00000006238	lsm4	59	97.727	ENSCAPG00000014140	LSM4	71	95.960	Cavia_aperea
ENSAPEG00000006238	lsm4	59	97.727	ENSCPOG00000024117	LSM4	71	95.960	Cavia_porcellus
ENSAPEG00000006238	lsm4	59	98.864	ENSCCAG00000036308	LSM4	99	75.000	Cebus_capucinus
ENSAPEG00000006238	lsm4	59	98.864	ENSCATG00000029311	LSM4	99	75.000	Cercocebus_atys
ENSAPEG00000006238	lsm4	59	98.864	ENSCLAG00000010828	LSM4	99	74.658	Chinchilla_lanigera
ENSAPEG00000006238	lsm4	59	98.864	ENSCSAG00000005370	LSM4	99	75.000	Chlorocebus_sabaeus
ENSAPEG00000006238	lsm4	59	100.000	ENSCPBG00000012925	LSM4	72	97.980	Chrysemys_picta_bellii
ENSAPEG00000006238	lsm4	58	93.023	ENSCING00000007519	-	72	92.391	Ciona_intestinalis
ENSAPEG00000006238	lsm4	58	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSAPEG00000006238	lsm4	59	98.864	ENSCANG00000043686	LSM4	99	75.000	Colobus_angolensis_palliatus
ENSAPEG00000006238	lsm4	59	95.455	ENSCGRG00001014436	Lsm4	71	93.939	Cricetulus_griseus_chok1gshd
ENSAPEG00000006238	lsm4	58	95.402	ENSCGRG00000009398	Lsm4	71	93.878	Cricetulus_griseus_crigri
ENSAPEG00000006238	lsm4	100	83.221	ENSCSEG00000016127	lsm4	100	91.275	Cynoglossus_semilaevis
ENSAPEG00000006238	lsm4	90	89.552	ENSCVAG00000021828	lsm4	98	89.552	Cyprinodon_variegatus
ENSAPEG00000006238	lsm4	100	90.604	ENSCVAG00000010601	lsm4	100	90.604	Cyprinodon_variegatus
ENSAPEG00000006238	lsm4	95	83.108	ENSDARG00000023852	lsm4	98	83.688	Danio_rerio
ENSAPEG00000006238	lsm4	59	97.727	ENSDORG00000024225	Lsm4	99	74.306	Dipodomys_ordii
ENSAPEG00000006238	lsm4	67	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSAPEG00000006238	lsm4	50	93.333	ENSEBUG00000003639	-	64	77.083	Eptatretus_burgeri
ENSAPEG00000006238	lsm4	93	88.489	ENSELUG00000012821	lsm4	100	88.489	Esox_lucius
ENSAPEG00000006238	lsm4	59	98.864	ENSFCAG00000040580	LSM4	99	75.000	Felis_catus
ENSAPEG00000006238	lsm4	58	100.000	ENSFALG00000009478	LSM4	71	97.959	Ficedula_albicollis
ENSAPEG00000006238	lsm4	58	98.851	ENSFDAG00000010124	LSM4	99	74.825	Fukomys_damarensis
ENSAPEG00000006238	lsm4	99	79.085	ENSGMOG00000007729	lsm4	99	78.667	Gadus_morhua
ENSAPEG00000006238	lsm4	59	100.000	ENSGALG00000003385	LSM4	72	97.980	Gallus_gallus
ENSAPEG00000006238	lsm4	100	89.262	ENSGAFG00000004903	lsm4	97	86.567	Gambusia_affinis
ENSAPEG00000006238	lsm4	100	88.742	ENSGACG00000008140	lsm4	100	89.404	Gasterosteus_aculeatus
ENSAPEG00000006238	lsm4	59	100.000	ENSGAGG00000017812	LSM4	72	97.980	Gopherus_agassizii
ENSAPEG00000006238	lsm4	59	98.864	ENSGGOG00000012914	-	99	75.000	Gorilla_gorilla
ENSAPEG00000006238	lsm4	100	94.631	ENSHBUG00000008858	lsm4	80	94.631	Haplochromis_burtoni
ENSAPEG00000006238	lsm4	97	75.342	ENSHGLG00000006568	LSM4	99	74.658	Heterocephalus_glaber_female
ENSAPEG00000006238	lsm4	62	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSAPEG00000006238	lsm4	100	91.946	ENSHCOG00000008819	lsm4	100	91.946	Hippocampus_comes
ENSAPEG00000006238	lsm4	100	86.667	ENSIPUG00000005368	Lsm4	100	86.000	Ictalurus_punctatus
ENSAPEG00000006238	lsm4	59	98.864	ENSSTOG00000016494	LSM4	99	75.000	Ictidomys_tridecemlineatus
ENSAPEG00000006238	lsm4	59	96.591	ENSJJAG00000017420	Lsm4	99	73.611	Jaculus_jaculus
ENSAPEG00000006238	lsm4	100	88.591	ENSKMAG00000005073	lsm4	100	91.946	Kryptolebias_marmoratus
ENSAPEG00000006238	lsm4	100	97.987	ENSLBEG00000027930	lsm4	100	97.987	Labrus_bergylta
ENSAPEG00000006238	lsm4	59	100.000	ENSLACG00000015861	LSM4	71	97.980	Latimeria_chalumnae
ENSAPEG00000006238	lsm4	85	91.406	ENSLOCG00000002025	lsm4	100	79.866	Lepisosteus_oculatus
ENSAPEG00000006238	lsm4	58	97.701	ENSLAFG00000017459	LSM4	71	95.918	Loxodonta_africana
ENSAPEG00000006238	lsm4	59	98.864	ENSMFAG00000031194	LSM4	99	75.000	Macaca_fascicularis
ENSAPEG00000006238	lsm4	59	98.864	ENSMMUG00000004405	LSM4	99	75.000	Macaca_mulatta
ENSAPEG00000006238	lsm4	59	98.864	ENSMNEG00000042899	LSM4	99	75.000	Macaca_nemestrina
ENSAPEG00000006238	lsm4	59	98.864	ENSMLEG00000027948	LSM4	99	75.000	Mandrillus_leucophaeus
ENSAPEG00000006238	lsm4	100	92.617	ENSMAMG00000006190	lsm4	100	92.617	Mastacembelus_armatus
ENSAPEG00000006238	lsm4	100	94.631	ENSMZEG00005016420	lsm4	100	94.631	Maylandia_zebra
ENSAPEG00000006238	lsm4	89	77.612	ENSMGAG00000004976	LSM4	71	97.959	Meleagris_gallopavo
ENSAPEG00000006238	lsm4	66	95.960	ENSMICG00000000222	LSM4	99	74.306	Microcebus_murinus
ENSAPEG00000006238	lsm4	59	95.455	ENSMOCG00000020861	Lsm4	99	72.917	Microtus_ochrogaster
ENSAPEG00000006238	lsm4	100	91.946	ENSMALG00000018159	lsm4	100	91.946	Monopterus_albus
ENSAPEG00000006238	lsm4	59	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	72.917	Mus_caroli
ENSAPEG00000006238	lsm4	59	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSAPEG00000006238	lsm4	59	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	72.917	Mus_pahari
ENSAPEG00000006238	lsm4	59	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	72.917	Mus_spretus
ENSAPEG00000006238	lsm4	59	98.864	ENSMPUG00000015589	LSM4	99	75.000	Mustela_putorius_furo
ENSAPEG00000006238	lsm4	58	98.851	ENSMLUG00000004010	LSM4	98	74.825	Myotis_lucifugus
ENSAPEG00000006238	lsm4	59	95.455	ENSNGAG00000008644	Lsm4	99	72.917	Nannospalax_galili
ENSAPEG00000006238	lsm4	72	98.148	ENSNBRG00000022150	lsm4	67	98.148	Neolamprologus_brichardi
ENSAPEG00000006238	lsm4	87	69.767	ENSOPRG00000005575	LSM4	98	72.093	Ochotona_princeps
ENSAPEG00000006238	lsm4	97	60.274	ENSODEG00000011712	-	70	60.215	Octodon_degus
ENSAPEG00000006238	lsm4	59	88.636	ENSODEG00000004519	-	99	68.056	Octodon_degus
ENSAPEG00000006238	lsm4	59	98.864	ENSODEG00000020549	-	99	75.000	Octodon_degus
ENSAPEG00000006238	lsm4	100	95.302	ENSONIG00000012724	lsm4	100	95.302	Oreochromis_niloticus
ENSAPEG00000006238	lsm4	58	94.505	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSAPEG00000006238	lsm4	100	91.275	ENSORLG00000008391	lsm4	100	91.275	Oryzias_latipes
ENSAPEG00000006238	lsm4	100	91.946	ENSORLG00020014829	lsm4	100	91.946	Oryzias_latipes_hni
ENSAPEG00000006238	lsm4	100	91.275	ENSORLG00015010205	lsm4	100	91.275	Oryzias_latipes_hsok
ENSAPEG00000006238	lsm4	100	89.933	ENSOMEG00000003606	lsm4	100	89.933	Oryzias_melastigma
ENSAPEG00000006238	lsm4	66	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSAPEG00000006238	lsm4	87	73.643	ENSOARG00000012553	LSM4	96	73.643	Ovis_aries
ENSAPEG00000006238	lsm4	59	98.864	ENSPPAG00000044045	-	99	75.000	Pan_paniscus
ENSAPEG00000006238	lsm4	59	98.864	ENSPPRG00000018264	LSM4	99	75.000	Panthera_pardus
ENSAPEG00000006238	lsm4	58	98.851	ENSPTIG00000006306	LSM4	99	74.825	Panthera_tigris_altaica
ENSAPEG00000006238	lsm4	59	98.864	ENSPTRG00000031470	LSM4	99	75.000	Pan_troglodytes
ENSAPEG00000006238	lsm4	59	98.864	ENSPANG00000014399	LSM4	99	75.000	Papio_anubis
ENSAPEG00000006238	lsm4	100	86.000	ENSPKIG00000006154	lsm4	100	86.000	Paramormyrops_kingsleyae
ENSAPEG00000006238	lsm4	94	76.596	ENSPSIG00000012358	LSM4	72	97.959	Pelodiscus_sinensis
ENSAPEG00000006238	lsm4	59	95.455	ENSPEMG00000001358	Lsm4	99	72.917	Peromyscus_maniculatus_bairdii
ENSAPEG00000006238	lsm4	100	89.262	ENSPFOG00000000570	lsm4	76	89.262	Poecilia_formosa
ENSAPEG00000006238	lsm4	100	89.262	ENSPLAG00000016267	lsm4	100	89.262	Poecilia_latipinna
ENSAPEG00000006238	lsm4	100	89.262	ENSPMEG00000016378	lsm4	100	89.262	Poecilia_mexicana
ENSAPEG00000006238	lsm4	100	89.933	ENSPREG00000011290	lsm4	76	89.933	Poecilia_reticulata
ENSAPEG00000006238	lsm4	59	98.864	ENSPPYG00000009736	LSM4	99	75.000	Pongo_abelii
ENSAPEG00000006238	lsm4	66	95.960	ENSPCOG00000019837	LSM4	99	74.306	Propithecus_coquereli
ENSAPEG00000006238	lsm4	59	98.864	ENSPVAG00000015383	LSM4	99	75.000	Pteropus_vampyrus
ENSAPEG00000006238	lsm4	100	94.631	ENSPNYG00000016794	lsm4	100	94.631	Pundamilia_nyererei
ENSAPEG00000006238	lsm4	95	88.652	ENSPNAG00000016598	lsm4	99	88.652	Pygocentrus_nattereri
ENSAPEG00000006238	lsm4	59	95.455	ENSRNOG00000019572	Lsm4	99	72.917	Rattus_norvegicus
ENSAPEG00000006238	lsm4	59	98.864	ENSRBIG00000024717	LSM4	99	75.000	Rhinopithecus_bieti
ENSAPEG00000006238	lsm4	59	98.864	ENSRROG00000045706	LSM4	99	75.000	Rhinopithecus_roxellana
ENSAPEG00000006238	lsm4	56	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSAPEG00000006238	lsm4	50	98.649	ENSSBOG00000022455	LSM4	98	72.308	Saimiri_boliviensis_boliviensis
ENSAPEG00000006238	lsm4	59	100.000	ENSSHAG00000011559	LSM4	71	97.980	Sarcophilus_harrisii
ENSAPEG00000006238	lsm4	100	86.000	ENSSFOG00015021067	lsm4	100	86.000	Scleropages_formosus
ENSAPEG00000006238	lsm4	100	84.667	ENSSMAG00000021020	lsm4	100	90.667	Scophthalmus_maximus
ENSAPEG00000006238	lsm4	100	88.024	ENSSDUG00000009588	lsm4	100	88.024	Seriola_dumerili
ENSAPEG00000006238	lsm4	100	87.500	ENSSLDG00000006827	lsm4	100	87.500	Seriola_lalandi_dorsalis
ENSAPEG00000006238	lsm4	58	100.000	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSAPEG00000006238	lsm4	100	98.675	ENSSPAG00000011615	lsm4	100	98.675	Stegastes_partitus
ENSAPEG00000006238	lsm4	59	98.864	ENSSSCG00000034314	LSM4	99	75.000	Sus_scrofa
ENSAPEG00000006238	lsm4	100	90.604	ENSTRUG00000021737	lsm4	100	90.604	Takifugu_rubripes
ENSAPEG00000006238	lsm4	100	85.333	ENSTNIG00000010191	lsm4	100	85.333	Tetraodon_nigroviridis
ENSAPEG00000006238	lsm4	73	94.545	ENSUAMG00000000665	LSM4	91	94.545	Ursus_americanus
ENSAPEG00000006238	lsm4	59	98.864	ENSUMAG00000009013	LSM4	99	75.000	Ursus_maritimus
ENSAPEG00000006238	lsm4	58	98.851	ENSVVUG00000008136	LSM4	70	74.825	Vulpes_vulpes
ENSAPEG00000006238	lsm4	66	96.939	ENSXETG00000024933	lsm4	99	74.306	Xenopus_tropicalis
ENSAPEG00000006238	lsm4	100	88.591	ENSXMAG00000026672	lsm4	76	88.591	Xiphophorus_maculatus