EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPEG00000006620 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Minus strand
Length: 40628 bases
Position: chr10:32522207-32562834
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000009285	XRN_N	PF03159.18	1.7e-96	1	1
ENSAPEP00000009226	XRN_N	PF03159.18	1.8e-96	1	1
ENSAPEP00000009248	XRN_N	PF03159.18	3.5e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000009538	-	4677	-	ENSAPEP00000009285	1558 (aa)	-	-
ENSAPET00000009479	-	5652	-	ENSAPEP00000009226	1625 (aa)	-	-
ENSAPET00000009501	-	8449	-	ENSAPEP00000009248	1717 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000006620's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000006620's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000006620	xrn1	98	62.720	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSAPEG00000006620	xrn1	99	94.044	ENSAPOG00000000622	xrn1	100	95.137	Acanthochromis_polyacanthus
ENSAPEG00000006620	xrn1	91	72.298	ENSAMEG00000012538	XRN1	100	61.002	Ailuropoda_melanoleuca
ENSAPEG00000006620	xrn1	95	90.902	ENSACIG00000001057	xrn1	99	90.574	Amphilophus_citrinellus
ENSAPEG00000006620	xrn1	99	96.594	ENSAOCG00000014097	xrn1	100	95.017	Amphiprion_ocellaris
ENSAPEG00000006620	xrn1	100	85.681	ENSATEG00000009752	xrn1	99	85.837	Anabas_testudineus
ENSAPEG00000006620	xrn1	89	72.104	ENSAPLG00000004905	XRN1	100	60.751	Anas_platyrhynchos
ENSAPEG00000006620	xrn1	91	69.565	ENSACAG00000004985	XRN1	100	59.703	Anolis_carolinensis
ENSAPEG00000006620	xrn1	91	72.574	ENSANAG00000029013	XRN1	99	73.698	Aotus_nancymaae
ENSAPEG00000006620	xrn1	100	86.337	ENSACLG00000004806	xrn1	99	86.221	Astatotilapia_calliptera
ENSAPEG00000006620	xrn1	99	71.599	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSAPEG00000006620	xrn1	100	60.752	ENSBTAG00000011524	XRN1	100	61.036	Bos_taurus
ENSAPEG00000006620	xrn1	76	37.003	WBGene00012730	xrn-1	75	61.930	Caenorhabditis_elegans
ENSAPEG00000006620	xrn1	91	72.494	ENSCJAG00000001872	XRN1	98	63.249	Callithrix_jacchus
ENSAPEG00000006620	xrn1	91	73.034	ENSCAFG00000007783	XRN1	100	61.127	Canis_familiaris
ENSAPEG00000006620	xrn1	91	73.034	ENSCAFG00020009120	XRN1	99	76.341	Canis_lupus_dingo
ENSAPEG00000006620	xrn1	91	72.472	ENSCHIG00000019192	XRN1	99	61.508	Capra_hircus
ENSAPEG00000006620	xrn1	91	72.071	ENSTSYG00000002705	XRN1	100	61.039	Carlito_syrichta
ENSAPEG00000006620	xrn1	54	85.581	ENSCAPG00000004604	-	94	85.581	Cavia_aperea
ENSAPEG00000006620	xrn1	91	72.414	ENSCCAG00000034800	XRN1	99	77.901	Cebus_capucinus
ENSAPEG00000006620	xrn1	98	62.902	ENSCATG00000041794	XRN1	100	60.654	Cercocebus_atys
ENSAPEG00000006620	xrn1	91	72.713	ENSCLAG00000001451	XRN1	99	78.537	Chinchilla_lanigera
ENSAPEG00000006620	xrn1	98	62.470	ENSCSAG00000011265	XRN1	100	60.269	Chlorocebus_sabaeus
ENSAPEG00000006620	xrn1	55	94.805	ENSCHOG00000013961	-	53	94.805	Choloepus_hoffmanni
ENSAPEG00000006620	xrn1	76	50.200	ENSCSAVG00000008584	-	93	50.100	Ciona_savignyi
ENSAPEG00000006620	xrn1	98	62.772	ENSCANG00000037495	XRN1	99	77.901	Colobus_angolensis_palliatus
ENSAPEG00000006620	xrn1	91	72.178	ENSCGRG00001019411	Xrn1	99	78.855	Cricetulus_griseus_chok1gshd
ENSAPEG00000006620	xrn1	91	72.178	ENSCGRG00000012464	Xrn1	99	78.855	Cricetulus_griseus_crigri
ENSAPEG00000006620	xrn1	99	75.691	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSAPEG00000006620	xrn1	72	87.245	ENSCVAG00000013089	xrn1	99	87.245	Cyprinodon_variegatus
ENSAPEG00000006620	xrn1	99	72.959	ENSDARG00000091652	xrn1	98	83.333	Danio_rerio
ENSAPEG00000006620	xrn1	91	72.472	ENSDORG00000013833	Xrn1	100	60.821	Dipodomys_ordii
ENSAPEG00000006620	xrn1	80	39.235	FBgn0020261	pcm	78	39.235	Drosophila_melanogaster
ENSAPEG00000006620	xrn1	86	70.270	ENSETEG00000003978	XRN1	88	68.595	Echinops_telfairi
ENSAPEG00000006620	xrn1	91	72.935	ENSEASG00005002687	XRN1	99	78.537	Equus_asinus_asinus
ENSAPEG00000006620	xrn1	98	62.779	ENSECAG00000008301	XRN1	100	60.551	Equus_caballus
ENSAPEG00000006620	xrn1	89	81.579	ENSEEUG00000011323	XRN1	92	65.396	Erinaceus_europaeus
ENSAPEG00000006620	xrn1	100	73.075	ENSELUG00000000169	xrn1	100	73.022	Esox_lucius
ENSAPEG00000006620	xrn1	98	59.367	ENSFCAG00000027589	XRN1	99	80.440	Felis_catus
ENSAPEG00000006620	xrn1	93	70.195	ENSFALG00000007021	XRN1	100	60.331	Ficedula_albicollis
ENSAPEG00000006620	xrn1	91	71.888	ENSFDAG00000020494	XRN1	99	78.378	Fukomys_damarensis
ENSAPEG00000006620	xrn1	90	75.473	ENSGMOG00000006396	xrn1	88	75.802	Gadus_morhua
ENSAPEG00000006620	xrn1	91	72.147	ENSGALG00000002706	XRN1	100	60.927	Gallus_gallus
ENSAPEG00000006620	xrn1	98	89.022	ENSGACG00000014328	xrn1	100	80.598	Gasterosteus_aculeatus
ENSAPEG00000006620	xrn1	91	72.466	ENSGAGG00000017535	XRN1	99	62.375	Gopherus_agassizii
ENSAPEG00000006620	xrn1	100	60.847	ENSGGOG00000008047	XRN1	100	60.551	Gorilla_gorilla
ENSAPEG00000006620	xrn1	99	85.587	ENSHBUG00000005908	xrn1	98	84.886	Haplochromis_burtoni
ENSAPEG00000006620	xrn1	91	72.552	ENSHGLG00000014476	XRN1	99	78.219	Heterocephalus_glaber_female
ENSAPEG00000006620	xrn1	91	72.552	ENSHGLG00100015130	XRN1	99	78.219	Heterocephalus_glaber_male
ENSAPEG00000006620	xrn1	94	84.886	ENSHCOG00000014062	xrn1	99	84.804	Hippocampus_comes
ENSAPEG00000006620	xrn1	98	72.418	ENSIPUG00000015229	xrn1	100	69.828	Ictalurus_punctatus
ENSAPEG00000006620	xrn1	91	72.654	ENSSTOG00000013552	XRN1	99	78.060	Ictidomys_tridecemlineatus
ENSAPEG00000006620	xrn1	89	72.108	ENSJJAG00000010863	Xrn1	99	77.778	Jaculus_jaculus
ENSAPEG00000006620	xrn1	98	82.666	ENSKMAG00000021356	xrn1	99	81.319	Kryptolebias_marmoratus
ENSAPEG00000006620	xrn1	96	93.478	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSAPEG00000006620	xrn1	92	71.801	ENSLACG00000009020	XRN1	100	60.487	Latimeria_chalumnae
ENSAPEG00000006620	xrn1	98	69.314	ENSLOCG00000007944	xrn1	100	67.003	Lepisosteus_oculatus
ENSAPEG00000006620	xrn1	68	73.510	ENSLAFG00000015426	XRN1	99	73.290	Loxodonta_africana
ENSAPEG00000006620	xrn1	98	62.963	ENSMFAG00000032599	XRN1	100	60.710	Macaca_fascicularis
ENSAPEG00000006620	xrn1	98	62.902	ENSMMUG00000014038	XRN1	100	60.654	Macaca_mulatta
ENSAPEG00000006620	xrn1	98	63.024	ENSMNEG00000034217	XRN1	100	60.598	Macaca_nemestrina
ENSAPEG00000006620	xrn1	95	89.655	ENSMAMG00000013219	xrn1	99	89.498	Mastacembelus_armatus
ENSAPEG00000006620	xrn1	100	86.221	ENSMZEG00005015099	xrn1	99	86.105	Maylandia_zebra
ENSAPEG00000006620	xrn1	91	71.033	ENSMGAG00000006333	XRN1	100	59.773	Meleagris_gallopavo
ENSAPEG00000006620	xrn1	91	72.552	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSAPEG00000006620	xrn1	62	77.583	ENSMOCG00000008665	Xrn1	99	78.537	Microtus_ochrogaster
ENSAPEG00000006620	xrn1	98	62.500	ENSMODG00000021236	XRN1	100	60.852	Monodelphis_domestica
ENSAPEG00000006620	xrn1	99	80.795	ENSMALG00000004098	xrn1	100	79.444	Monopterus_albus
ENSAPEG00000006620	xrn1	91	67.122	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSAPEG00000006620	xrn1	91	72.552	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSAPEG00000006620	xrn1	91	72.303	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSAPEG00000006620	xrn1	91	72.472	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSAPEG00000006620	xrn1	98	63.291	ENSMPUG00000012040	XRN1	100	61.211	Mustela_putorius_furo
ENSAPEG00000006620	xrn1	91	72.071	ENSMLUG00000016885	XRN1	100	59.888	Myotis_lucifugus
ENSAPEG00000006620	xrn1	62	73.089	ENSNGAG00000023964	Xrn1	99	74.204	Nannospalax_galili
ENSAPEG00000006620	xrn1	98	62.417	ENSNLEG00000004726	XRN1	100	60.269	Nomascus_leucogenys
ENSAPEG00000006620	xrn1	65	96.907	ENSMEUG00000014473	-	66	97.087	Notamacropus_eugenii
ENSAPEG00000006620	xrn1	70	69.565	ENSOPRG00000007337	-	73	68.841	Ochotona_princeps
ENSAPEG00000006620	xrn1	99	85.829	ENSONIG00000016673	xrn1	99	88.689	Oreochromis_niloticus
ENSAPEG00000006620	xrn1	84	68.045	ENSOANG00000006735	XRN1	100	57.343	Ornithorhynchus_anatinus
ENSAPEG00000006620	xrn1	91	72.851	ENSOCUG00000001861	XRN1	100	60.950	Oryctolagus_cuniculus
ENSAPEG00000006620	xrn1	100	82.490	ENSORLG00000013005	xrn1	98	81.966	Oryzias_latipes
ENSAPEG00000006620	xrn1	100	82.083	ENSORLG00020005559	xrn1	100	81.559	Oryzias_latipes_hni
ENSAPEG00000006620	xrn1	100	81.559	ENSORLG00015022523	xrn1	100	81.326	Oryzias_latipes_hsok
ENSAPEG00000006620	xrn1	99	84.433	ENSOMEG00000015397	xrn1	99	89.071	Oryzias_melastigma
ENSAPEG00000006620	xrn1	91	70.064	ENSOGAG00000000170	XRN1	100	59.035	Otolemur_garnettii
ENSAPEG00000006620	xrn1	91	72.494	ENSOARG00000006343	XRN1	99	61.196	Ovis_aries
ENSAPEG00000006620	xrn1	98	62.902	ENSPPAG00000010180	XRN1	100	60.929	Pan_paniscus
ENSAPEG00000006620	xrn1	98	63.107	ENSPPRG00000007125	XRN1	100	61.478	Panthera_pardus
ENSAPEG00000006620	xrn1	98	63.107	ENSPTIG00000021081	XRN1	100	61.421	Panthera_tigris_altaica
ENSAPEG00000006620	xrn1	98	62.902	ENSPTRG00000015482	XRN1	100	60.929	Pan_troglodytes
ENSAPEG00000006620	xrn1	98	62.902	ENSPANG00000010638	XRN1	100	60.598	Papio_anubis
ENSAPEG00000006620	xrn1	92	71.724	ENSPSIG00000018050	XRN1	100	59.878	Pelodiscus_sinensis
ENSAPEG00000006620	xrn1	62	87.859	ENSPMGG00000002648	xrn1	99	87.859	Periophthalmus_magnuspinnatus
ENSAPEG00000006620	xrn1	62	77.742	ENSPEMG00000020610	Xrn1	99	78.855	Peromyscus_maniculatus_bairdii
ENSAPEG00000006620	xrn1	71	51.174	ENSPMAG00000002975	xrn1	90	77.299	Petromyzon_marinus
ENSAPEG00000006620	xrn1	93	71.026	ENSPCIG00000028735	XRN1	99	78.503	Phascolarctos_cinereus
ENSAPEG00000006620	xrn1	95	84.650	ENSPFOG00000013932	xrn1	99	85.233	Poecilia_formosa
ENSAPEG00000006620	xrn1	95	84.990	ENSPLAG00000021653	xrn1	99	85.185	Poecilia_latipinna
ENSAPEG00000006620	xrn1	92	85.126	ENSPMEG00000003076	xrn1	95	85.193	Poecilia_mexicana
ENSAPEG00000006620	xrn1	100	82.995	ENSPREG00000021147	xrn1	100	83.169	Poecilia_reticulata
ENSAPEG00000006620	xrn1	100	60.404	ENSPPYG00000014172	XRN1	100	60.168	Pongo_abelii
ENSAPEG00000006620	xrn1	82	79.121	ENSPCAG00000005638	XRN1	92	79.121	Procavia_capensis
ENSAPEG00000006620	xrn1	91	72.231	ENSPCOG00000013089	XRN1	99	77.901	Propithecus_coquereli
ENSAPEG00000006620	xrn1	86	70.390	ENSPVAG00000016265	XRN1	87	70.390	Pteropus_vampyrus
ENSAPEG00000006620	xrn1	99	86.367	ENSPNYG00000010570	xrn1	99	84.128	Pundamilia_nyererei
ENSAPEG00000006620	xrn1	98	72.099	ENSPNAG00000023531	xrn1	100	70.000	Pygocentrus_nattereri
ENSAPEG00000006620	xrn1	91	72.458	ENSRNOG00000042951	Xrn1	100	59.711	Rattus_norvegicus
ENSAPEG00000006620	xrn1	98	62.682	ENSRBIG00000041227	XRN1	100	60.451	Rhinopithecus_bieti
ENSAPEG00000006620	xrn1	74	52.989	YGL173C	XRN1	73	52.989	Saccharomyces_cerevisiae
ENSAPEG00000006620	xrn1	100	61.108	ENSSBOG00000029561	XRN1	100	61.309	Saimiri_boliviensis_boliviensis
ENSAPEG00000006620	xrn1	97	70.462	ENSSHAG00000016207	XRN1	100	60.136	Sarcophilus_harrisii
ENSAPEG00000006620	xrn1	98	70.906	ENSSFOG00015024211	xrn1	100	68.342	Scleropages_formosus
ENSAPEG00000006620	xrn1	99	84.314	ENSSMAG00000016534	xrn1	93	93.878	Scophthalmus_maximus
ENSAPEG00000006620	xrn1	91	92.069	ENSSDUG00000010306	xrn1	97	91.961	Seriola_dumerili
ENSAPEG00000006620	xrn1	95	90.603	ENSSLDG00000021543	xrn1	99	90.290	Seriola_lalandi_dorsalis
ENSAPEG00000006620	xrn1	66	67.562	ENSSARG00000007741	-	75	67.562	Sorex_araneus
ENSAPEG00000006620	xrn1	93	72.764	ENSTGUG00000008498	XRN1	100	60.828	Taeniopygia_guttata
ENSAPEG00000006620	xrn1	100	77.273	ENSTRUG00000004895	xrn1	96	87.768	Takifugu_rubripes
ENSAPEG00000006620	xrn1	95	82.492	ENSTNIG00000017615	xrn1	100	73.387	Tetraodon_nigroviridis
ENSAPEG00000006620	xrn1	79	84.677	ENSTBEG00000003256	XRN1	88	71.406	Tupaia_belangeri
ENSAPEG00000006620	xrn1	100	57.567	ENSTTRG00000012914	XRN1	100	57.705	Tursiops_truncatus
ENSAPEG00000006620	xrn1	91	70.947	ENSUAMG00000001608	XRN1	99	75.199	Ursus_americanus
ENSAPEG00000006620	xrn1	91	72.632	ENSUMAG00000013625	XRN1	100	60.726	Ursus_maritimus
ENSAPEG00000006620	xrn1	98	60.579	ENSVPAG00000004690	XRN1	100	59.145	Vicugna_pacos
ENSAPEG00000006620	xrn1	91	73.034	ENSVVUG00000024461	XRN1	99	78.696	Vulpes_vulpes
ENSAPEG00000006620	xrn1	99	62.289	ENSXETG00000000619	xrn1	99	85.039	Xenopus_tropicalis
ENSAPEG00000006620	xrn1	99	81.806	ENSXCOG00000007917	xrn1	100	78.559	Xiphophorus_couchianus
ENSAPEG00000006620	xrn1	94	86.803	ENSXMAG00000018320	xrn1	98	87.099	Xiphophorus_maculatus