EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPEG00000008029 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Plus strand
Length: 12265 bases
Position: chr10:34013696-34025960
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000011225	RRM_1	PF00076.22	1.3e-30	1	2
ENSAPEP00000011225	RRM_1	PF00076.22	1.3e-30	2	2
ENSAPEP00000011207	RRM_1	PF00076.22	2e-30	1	2
ENSAPEP00000011207	RRM_1	PF00076.22	2e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000011529	-	873	-	ENSAPEP00000011225	290 (aa)	-	-
ENSAPET00000011511	-	2868	-	ENSAPEP00000011207	336 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000008029's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000008029's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPEG00000008029	trnau1apb	59	31.034	ENSAPEG00000002524	-	72	31.034
ENSAPEG00000008029	trnau1apb	66	30.460	ENSAPEG00000024742	tial1	76	30.460
ENSAPEG00000008029	trnau1apb	98	43.620	ENSAPEG00000008868	trnau1apa	98	44.674

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000008029	trnau1apb	100	89.298	ENSAPOG00000010086	trnau1apb	100	88.629	Acanthochromis_polyacanthus
ENSAPEG00000008029	trnau1apb	100	86.310	ENSACIG00000001863	trnau1apb	100	82.738	Amphilophus_citrinellus
ENSAPEG00000008029	trnau1apb	100	98.235	ENSAOCG00000011891	trnau1apb	100	98.235	Amphiprion_ocellaris
ENSAPEG00000008029	trnau1apb	100	92.059	ENSATEG00000002196	trnau1apb	100	84.706	Anabas_testudineus
ENSAPEG00000008029	trnau1apb	100	86.136	ENSACLG00000003016	trnau1apb	100	82.301	Astatotilapia_calliptera
ENSAPEG00000008029	trnau1apb	99	66.562	ENSAMXG00000001805	trnau1apb	99	65.815	Astyanax_mexicanus
ENSAPEG00000008029	trnau1apb	99	83.430	ENSCSEG00000018215	trnau1apb	99	69.527	Cynoglossus_semilaevis
ENSAPEG00000008029	trnau1apb	95	80.000	ENSCVAG00000017866	trnau1apb	100	72.783	Cyprinodon_variegatus
ENSAPEG00000008029	trnau1apb	100	65.089	ENSDARG00000056475	trnau1apb	98	63.772	Danio_rerio
ENSAPEG00000008029	trnau1apb	100	65.089	ENSELUG00000016683	trnau1apb	99	62.963	Esox_lucius
ENSAPEG00000008029	trnau1apb	100	83.526	ENSFHEG00000001267	trnau1apb	99	75.652	Fundulus_heteroclitus
ENSAPEG00000008029	trnau1apb	100	72.286	ENSGMOG00000001160	trnau1apb	100	74.260	Gadus_morhua
ENSAPEG00000008029	trnau1apb	63	92.308	ENSGAFG00000006770	trnau1apb	100	76.547	Gambusia_affinis
ENSAPEG00000008029	trnau1apb	100	82.738	ENSGACG00000014944	trnau1apb	100	82.440	Gasterosteus_aculeatus
ENSAPEG00000008029	trnau1apb	71	40.741	ENSGAGG00000022384	-	78	38.498	Gopherus_agassizii
ENSAPEG00000008029	trnau1apb	100	92.353	ENSHBUG00000018944	trnau1apb	99	81.765	Haplochromis_burtoni
ENSAPEG00000008029	trnau1apb	69	82.684	ENSHCOG00000011350	trnau1apb	70	82.192	Hippocampus_comes
ENSAPEG00000008029	trnau1apb	99	65.282	ENSIPUG00000008843	tsp1l	99	63.174	Ictalurus_punctatus
ENSAPEG00000008029	trnau1apb	65	91.781	ENSKMAG00000010082	trnau1apb	99	76.246	Kryptolebias_marmoratus
ENSAPEG00000008029	trnau1apb	100	90.774	ENSLBEG00000020480	trnau1apb	100	88.393	Labrus_bergylta
ENSAPEG00000008029	trnau1apb	100	56.090	ENSLOCG00000013175	trnau1apb	99	53.333	Lepisosteus_oculatus
ENSAPEG00000008029	trnau1apb	100	91.471	ENSMAMG00000012192	trnau1apb	100	79.586	Mastacembelus_armatus
ENSAPEG00000008029	trnau1apb	100	92.353	ENSMZEG00005014852	trnau1apb	99	81.765	Maylandia_zebra
ENSAPEG00000008029	trnau1apb	71	38.750	ENSMGAG00000003234	-	99	39.623	Meleagris_gallopavo
ENSAPEG00000008029	trnau1apb	97	77.101	ENSMMOG00000021521	trnau1apb	100	73.837	Mola_mola
ENSAPEG00000008029	trnau1apb	100	83.607	ENSMALG00000003772	trnau1apb	100	83.607	Monopterus_albus
ENSAPEG00000008029	trnau1apb	97	86.626	ENSNBRG00000000751	trnau1apb	99	82.675	Neolamprologus_brichardi
ENSAPEG00000008029	trnau1apb	99	82.583	ENSONIG00000016639	trnau1apb	100	74.132	Oreochromis_niloticus
ENSAPEG00000008029	trnau1apb	67	91.071	ENSORLG00000013265	trnau1apb	99	80.814	Oryzias_latipes
ENSAPEG00000008029	trnau1apb	100	85.965	ENSORLG00020004464	trnau1apb	100	80.982	Oryzias_latipes_hni
ENSAPEG00000008029	trnau1apb	100	85.965	ENSORLG00015021098	trnau1apb	99	81.287	Oryzias_latipes_hsok
ENSAPEG00000008029	trnau1apb	67	90.625	ENSOMEG00000016531	trnau1apb	99	83.721	Oryzias_melastigma
ENSAPEG00000008029	trnau1apb	100	59.763	ENSPKIG00000007995	trnau1apb	99	59.824	Paramormyrops_kingsleyae
ENSAPEG00000008029	trnau1apb	71	42.324	ENSPSIG00000004189	-	78	39.437	Pelodiscus_sinensis
ENSAPEG00000008029	trnau1apb	99	70.470	ENSPMGG00000018509	trnau1apb	95	79.574	Periophthalmus_magnuspinnatus
ENSAPEG00000008029	trnau1apb	100	82.948	ENSPFOG00000003938	trnau1apb	100	79.464	Poecilia_formosa
ENSAPEG00000008029	trnau1apb	100	82.948	ENSPLAG00000015480	trnau1apb	99	73.333	Poecilia_latipinna
ENSAPEG00000008029	trnau1apb	100	82.948	ENSPMEG00000012743	trnau1apb	99	73.333	Poecilia_mexicana
ENSAPEG00000008029	trnau1apb	100	81.503	ENSPREG00000015035	trnau1apb	99	72.174	Poecilia_reticulata
ENSAPEG00000008029	trnau1apb	100	83.481	ENSPNYG00000012127	trnau1apb	100	79.646	Pundamilia_nyererei
ENSAPEG00000008029	trnau1apb	99	67.062	ENSPNAG00000019138	trnau1apb	98	64.072	Pygocentrus_nattereri
ENSAPEG00000008029	trnau1apb	99	61.696	ENSSFOG00015014158	trnau1apb	99	61.584	Scleropages_formosus
ENSAPEG00000008029	trnau1apb	99	89.614	ENSSMAG00000001745	trnau1apb	99	72.917	Scophthalmus_maximus
ENSAPEG00000008029	trnau1apb	99	92.920	ENSSDUG00000011109	trnau1apb	99	85.546	Seriola_dumerili
ENSAPEG00000008029	trnau1apb	99	92.920	ENSSLDG00000012947	trnau1apb	99	85.546	Seriola_lalandi_dorsalis
ENSAPEG00000008029	trnau1apb	100	97.353	ENSSPAG00000006917	trnau1apb	100	97.353	Stegastes_partitus
ENSAPEG00000008029	trnau1apb	100	80.117	ENSTRUG00000008608	trnau1apb	100	77.027	Takifugu_rubripes
ENSAPEG00000008029	trnau1apb	99	70.871	ENSTNIG00000000916	trnau1apb	100	67.267	Tetraodon_nigroviridis
ENSAPEG00000008029	trnau1apb	93	79.795	ENSXCOG00000007974	trnau1apb	94	72.603	Xiphophorus_couchianus
ENSAPEG00000008029	trnau1apb	100	83.237	ENSXMAG00000029918	trnau1apb	99	73.333	Xiphophorus_maculatus