EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPEG00000010974 (Gene tree)
Gene ID: -
Gene Symbol: prpf38b
Alias: wu:fc43b05|zgc:63496
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Minus strand
Length: 8849 bases
Position: chr10:23098763-23107611
Accession: ZDB-GENE-040426-2878
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000015407	PRP38	PF03371.15	2e-54	1	1
ENSAPEP00000015421	PRP38	PF03371.15	2.5e-54	1	1
ENSAPEP00000015432	PRP38	PF03371.15	2e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000015833	-	1257	-	ENSAPEP00000015432	175 (aa)	-	-
ENSAPET00000015820	-	2354	-	ENSAPEP00000015421	513 (aa)	-	-
ENSAPET00000015806	-	5318	-	ENSAPEP00000015407	469 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000010974's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000010974's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000010974	prpf38b	100	99.360	ENSAPOG00000012791	-	100	99.360	Acanthochromis_polyacanthus
ENSAPEG00000010974	prpf38b	100	99.360	ENSAPOG00000005297	prpf38b	100	99.360	Acanthochromis_polyacanthus
ENSAPEG00000010974	prpf38b	100	99.610	ENSAOCG00000012675	prpf38b	100	99.610	Amphiprion_ocellaris
ENSAPEG00000010974	prpf38b	94	96.951	ENSACLG00000001712	prpf38b	62	94.097	Astatotilapia_calliptera
ENSAPEG00000010974	prpf38b	94	89.634	ENSDARG00000053101	prpf38b	96	89.091	Danio_rerio
ENSAPEG00000010974	prpf38b	94	95.122	ENSFHEG00000002861	prpf38b	62	92.708	Fundulus_heteroclitus
ENSAPEG00000010974	prpf38b	94	96.951	ENSGACG00000015154	prpf38b	70	92.388	Gasterosteus_aculeatus
ENSAPEG00000010974	prpf38b	94	96.951	ENSHBUG00000022496	prpf38b	62	94.097	Haplochromis_burtoni
ENSAPEG00000010974	prpf38b	88	95.455	ENSIPUG00000014942	prpf38b	58	81.655	Ictalurus_punctatus
ENSAPEG00000010974	prpf38b	99	96.532	ENSLBEG00000024500	prpf38b	94	96.532	Labrus_bergylta
ENSAPEG00000010974	prpf38b	100	97.740	ENSMAMG00000010641	prpf38b	94	97.740	Mastacembelus_armatus
ENSAPEG00000010974	prpf38b	94	96.951	ENSMZEG00005025536	prpf38b	62	94.097	Maylandia_zebra
ENSAPEG00000010974	prpf38b	94	96.951	ENSPNYG00000007625	prpf38b	62	94.097	Pundamilia_nyererei
ENSAPEG00000010974	prpf38b	100	97.868	ENSSPAG00000023160	-	100	97.868	Stegastes_partitus