EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPEG00000011989 (Gene tree)
Gene ID: -
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein a
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Minus strand
Length: 4443 bases
Position: chr10:23408495-23412937
Accession: ZDB-GENE-050417-329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000016760	RRM_1	PF00076.22	1.4e-25	1	1
ENSAPEP00000016773	RRM_1	PF00076.22	1.4e-25	1	1
ENSAPEP00000016788	RRM_1	PF00076.22	1.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000017221	-	715	-	ENSAPEP00000016760	181 (aa)	-	-
ENSAPET00000017235	-	747	-	ENSAPEP00000016773	182 (aa)	-	-
ENSAPET00000017251	-	725	-	ENSAPEP00000016788	184 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000011989's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000011989's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPEG00000011989	cirbpa	70	38.889	ENSAPEG00000011145	elavl3	63	38.356
ENSAPEG00000011989	cirbpa	89	41.558	ENSAPEG00000010558	-	51	41.333
ENSAPEG00000011989	cirbpa	50	30.769	ENSAPEG00000013125	-	56	32.895

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000011989	cirbpa	71	83.206	ENSAPOG00000004458	cirbpa	72	81.955	Acanthochromis_polyacanthus
ENSAPEG00000011989	cirbpa	99	74.317	ENSACIG00000016116	cirbpa	100	70.213	Amphilophus_citrinellus
ENSAPEG00000011989	cirbpa	99	99.444	ENSAOCG00000016212	cirbpa	100	97.826	Amphiprion_ocellaris
ENSAPEG00000011989	cirbpa	100	81.622	ENSATEG00000014985	cirbpa	100	70.811	Anabas_testudineus
ENSAPEG00000011989	cirbpa	100	73.797	ENSACLG00000002094	-	100	70.811	Astatotilapia_calliptera
ENSAPEG00000011989	cirbpa	100	61.290	ENSCSEG00000014344	cirbpa	100	65.285	Cynoglossus_semilaevis
ENSAPEG00000011989	cirbpa	100	79.459	ENSCVAG00000004853	cirbpa	100	73.913	Cyprinodon_variegatus
ENSAPEG00000011989	cirbpa	100	71.053	ENSFHEG00000002580	cirbpa	100	72.131	Fundulus_heteroclitus
ENSAPEG00000011989	cirbpa	100	72.539	ENSGAFG00000008654	cirbpa	100	74.468	Gambusia_affinis
ENSAPEG00000011989	cirbpa	100	61.307	ENSGACG00000015206	cirbpa	100	62.632	Gasterosteus_aculeatus
ENSAPEG00000011989	cirbpa	100	68.783	ENSHBUG00000022060	cirbpa	100	70.811	Haplochromis_burtoni
ENSAPEG00000011989	cirbpa	100	68.254	ENSKMAG00000005905	cirbpa	100	67.568	Kryptolebias_marmoratus
ENSAPEG00000011989	cirbpa	64	71.795	ENSLBEG00000027731	-	66	83.951	Labrus_bergylta
ENSAPEG00000011989	cirbpa	100	62.703	ENSLBEG00000000292	cirbpa	100	58.602	Labrus_bergylta
ENSAPEG00000011989	cirbpa	100	73.158	ENSMAMG00000010168	cirbpa	100	66.129	Mastacembelus_armatus
ENSAPEG00000011989	cirbpa	100	68.783	ENSMZEG00005025577	-	100	70.811	Maylandia_zebra
ENSAPEG00000011989	cirbpa	100	70.213	ENSMALG00000020092	cirbpa	100	70.270	Monopterus_albus
ENSAPEG00000011989	cirbpa	100	68.783	ENSNBRG00000019658	cirbpa	100	70.811	Neolamprologus_brichardi
ENSAPEG00000011989	cirbpa	99	73.770	ENSONIG00000010169	cirbpa	100	69.149	Oreochromis_niloticus
ENSAPEG00000011989	cirbpa	100	69.110	ENSORLG00000015433	cirbpa	100	70.745	Oryzias_latipes
ENSAPEG00000011989	cirbpa	100	69.110	ENSORLG00020016909	cirbpa	100	70.745	Oryzias_latipes_hni
ENSAPEG00000011989	cirbpa	100	69.110	ENSORLG00015016636	cirbpa	100	70.745	Oryzias_latipes_hsok
ENSAPEG00000011989	cirbpa	100	73.262	ENSOMEG00000021469	cirbpa	73	70.745	Oryzias_melastigma
ENSAPEG00000011989	cirbpa	99	73.626	ENSPMGG00000017342	cirbpa	94	74.863	Periophthalmus_magnuspinnatus
ENSAPEG00000011989	cirbpa	100	74.872	ENSPFOG00000015653	cirbpa	100	79.459	Poecilia_formosa
ENSAPEG00000011989	cirbpa	100	74.869	ENSPLAG00000011125	cirbpa	100	80.000	Poecilia_latipinna
ENSAPEG00000011989	cirbpa	100	74.869	ENSPMEG00000013878	cirbpa	100	80.000	Poecilia_mexicana
ENSAPEG00000011989	cirbpa	99	74.332	ENSPREG00000018042	cirbpa	98	73.797	Poecilia_reticulata
ENSAPEG00000011989	cirbpa	100	68.750	ENSPNYG00000007198	-	100	70.745	Pundamilia_nyererei
ENSAPEG00000011989	cirbpa	99	70.000	ENSSPAG00000023037	cirbpa	99	63.043	Stegastes_partitus
ENSAPEG00000011989	cirbpa	100	69.355	ENSTRUG00000010187	cirbpa	100	67.895	Takifugu_rubripes
ENSAPEG00000011989	cirbpa	100	68.617	ENSTNIG00000000450	cirbpa	100	65.445	Tetraodon_nigroviridis
ENSAPEG00000011989	cirbpa	99	74.332	ENSXCOG00000008262	cirbpa	92	95.890	Xiphophorus_couchianus
ENSAPEG00000011989	cirbpa	100	74.346	ENSXMAG00000019336	cirbpa	100	74.468	Xiphophorus_maculatus