EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPEG00000013544 (Gene tree)
Gene ID: -
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Plus strand
Length: 29803 bases
Position: chr16:26079494-26109296
Accession: ZDB-GENE-030131-7120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000019085	ResIII	PF04851.15	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000019603	-	4770	-	ENSAPEP00000019085	1589 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000013544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000013544's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPEG00000013544	chd1	98	56.269	ENSAPEG00000016676	chd2	99	55.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000013544	chd1	94	78.721	ENSG00000153922	CHD1	95	83.178	Homo_sapiens
ENSAPEG00000013544	chd1	72	96.531	ENSAPOG00000005764	chd1	98	96.531	Acanthochromis_polyacanthus
ENSAPEG00000013544	chd1	100	98.364	ENSAOCG00000023105	chd1	100	98.364	Amphiprion_ocellaris
ENSAPEG00000013544	chd1	94	92.533	ENSATEG00000010676	chd1	90	92.867	Anabas_testudineus
ENSAPEG00000013544	chd1	79	86.067	ENSAMXG00000010843	chd1	95	85.851	Astyanax_mexicanus
ENSAPEG00000013544	chd1	94	78.721	ENSCATG00000032035	CHD1	89	78.198	Cercocebus_atys
ENSAPEG00000013544	chd1	94	78.721	ENSCSAG00000015339	CHD1	88	78.198	Chlorocebus_sabaeus
ENSAPEG00000013544	chd1	55	79.019	ENSCPBG00000015831	CHD1	86	79.019	Chrysemys_picta_bellii
ENSAPEG00000013544	chd1	92	77.637	ENSCANG00000036916	CHD1	89	75.849	Colobus_angolensis_palliatus
ENSAPEG00000013544	chd1	94	77.676	ENSCGRG00001023943	Chd1	89	77.480	Cricetulus_griseus_chok1gshd
ENSAPEG00000013544	chd1	92	78.772	ENSCGRG00000008652	Chd1	88	77.480	Cricetulus_griseus_crigri
ENSAPEG00000013544	chd1	96	87.735	ENSCSEG00000009553	chd1	97	87.873	Cynoglossus_semilaevis
ENSAPEG00000013544	chd1	77	81.959	ENSEASG00005016110	CHD1	96	75.587	Equus_asinus_asinus
ENSAPEG00000013544	chd1	94	84.539	ENSELUG00000017677	chd1	93	84.342	Esox_lucius
ENSAPEG00000013544	chd1	77	91.429	ENSFHEG00000021164	chd1	89	91.184	Fundulus_heteroclitus
ENSAPEG00000013544	chd1	94	88.416	ENSGMOG00000001537	chd1	90	83.373	Gadus_morhua
ENSAPEG00000013544	chd1	97	75.490	ENSGALG00000031327	-	92	76.878	Gallus_gallus
ENSAPEG00000013544	chd1	83	85.461	ENSGAFG00000019880	chd1	87	84.739	Gambusia_affinis
ENSAPEG00000013544	chd1	94	75.179	ENSGGOG00000011463	CHD1	89	74.593	Gorilla_gorilla
ENSAPEG00000013544	chd1	96	90.402	ENSHCOG00000014222	chd1	96	90.532	Hippocampus_comes
ENSAPEG00000013544	chd1	96	84.065	ENSIPUG00000001369	chd1	96	83.376	Ictalurus_punctatus
ENSAPEG00000013544	chd1	56	82.054	ENSLAFG00000023183	CHD1	81	82.054	Loxodonta_africana
ENSAPEG00000013544	chd1	94	78.721	ENSMFAG00000031226	CHD1	89	78.198	Macaca_fascicularis
ENSAPEG00000013544	chd1	77	82.286	ENSMMUG00000014090	CHD1	85	82.286	Macaca_mulatta
ENSAPEG00000013544	chd1	94	78.721	ENSMNEG00000045073	CHD1	89	78.198	Macaca_nemestrina
ENSAPEG00000013544	chd1	94	74.347	ENSMLEG00000041096	CHD1	89	74.413	Mandrillus_leucophaeus
ENSAPEG00000013544	chd1	79	93.222	ENSMZEG00005010957	chd1	94	93.073	Maylandia_zebra
ENSAPEG00000013544	chd1	92	76.897	ENSMOCG00000019121	Chd1	88	76.034	Microtus_ochrogaster
ENSAPEG00000013544	chd1	77	94.458	ENSMALG00000013317	chd1	86	94.458	Monopterus_albus
ENSAPEG00000013544	chd1	92	78.786	MGP_CAROLIEiJ_G0021099	Chd1	90	76.339	Mus_caroli
ENSAPEG00000013544	chd1	92	78.853	ENSMUSG00000023852	Chd1	88	77.626	Mus_musculus
ENSAPEG00000013544	chd1	92	78.701	MGP_PahariEiJ_G0023414	Chd1	88	77.800	Mus_pahari
ENSAPEG00000013544	chd1	96	89.191	ENSNBRG00000006860	chd1	96	89.004	Neolamprologus_brichardi
ENSAPEG00000013544	chd1	94	76.639	ENSNLEG00000014493	CHD1	89	76.055	Nomascus_leucogenys
ENSAPEG00000013544	chd1	94	78.748	ENSOANG00000004891	CHD1	100	78.922	Ornithorhynchus_anatinus
ENSAPEG00000013544	chd1	56	90.034	ENSORLG00015016725	chd1	83	90.034	Oryzias_latipes_hsok
ENSAPEG00000013544	chd1	94	77.583	ENSPPAG00000043367	CHD1	90	76.933	Pan_paniscus
ENSAPEG00000013544	chd1	94	78.590	ENSPTRG00000017103	CHD1	89	77.988	Pan_troglodytes
ENSAPEG00000013544	chd1	94	78.721	ENSPANG00000006387	CHD1	89	78.198	Papio_anubis
ENSAPEG00000013544	chd1	94	78.389	ENSPKIG00000024719	chd1	92	77.109	Paramormyrops_kingsleyae
ENSAPEG00000013544	chd1	77	91.626	ENSPMGG00000005785	chd1	91	91.379	Periophthalmus_magnuspinnatus
ENSAPEG00000013544	chd1	92	78.838	ENSPEMG00000015939	Chd1	88	77.546	Peromyscus_maniculatus_bairdii
ENSAPEG00000013544	chd1	94	88.344	ENSPREG00000004209	chd1	90	88.278	Poecilia_reticulata
ENSAPEG00000013544	chd1	75	83.193	ENSRNOG00000014434	Chd1	86	81.944	Rattus_norvegicus
ENSAPEG00000013544	chd1	92	78.223	ENSRBIG00000044325	CHD1	89	76.486	Rhinopithecus_bieti
ENSAPEG00000013544	chd1	92	79.907	ENSRROG00000001726	CHD1	89	78.329	Rhinopithecus_roxellana
ENSAPEG00000013544	chd1	79	84.186	ENSSFOG00015007161	chd1	94	84.351	Scleropages_formosus
ENSAPEG00000013544	chd1	77	95.752	ENSSDUG00000018314	chd1	86	95.752	Seriola_dumerili
ENSAPEG00000013544	chd1	57	92.176	ENSSLDG00000017244	chd1	93	92.077	Seriola_lalandi_dorsalis
ENSAPEG00000013544	chd1	82	93.740	ENSSPAG00000007024	chd1	91	93.740	Stegastes_partitus
ENSAPEG00000013544	chd1	81	83.476	ENSSSCG00000014177	CHD1	87	83.476	Sus_scrofa
ENSAPEG00000013544	chd1	94	87.127	ENSTRUG00000010282	chd1	89	87.459	Takifugu_rubripes
ENSAPEG00000013544	chd1	67	92.703	ENSTNIG00000007101	chd1	85	91.629	Tetraodon_nigroviridis
ENSAPEG00000013544	chd1	98	82.606	ENSXCOG00000017184	chd1	92	84.149	Xiphophorus_couchianus
ENSAPEG00000013544	chd1	75	91.486	ENSXMAG00000014538	chd1	88	90.849	Xiphophorus_maculatus