EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPEG00000015861 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Plus strand
Length: 13133 bases
Position: chr12:26114233-26127365
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000022248	ResIII	PF04851.15	2.7e-07	1	1
ENSAPEP00000022267	ResIII	PF04851.15	2.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000022836	SMARCAL1-201	3387	-	ENSAPEP00000022248	913 (aa)	-	-
ENSAPET00000022856	SMARCAL1-202	3168	-	ENSAPEP00000022267	840 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000015861's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000015861's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000015861	SMARCAL1	99	55.598	ENSG00000138375	SMARCAL1	99	68.323	Homo_sapiens
ENSAPEG00000015861	SMARCAL1	100	94.862	ENSAPOG00000020156	SMARCAL1	100	93.976	Acanthochromis_polyacanthus
ENSAPEG00000015861	SMARCAL1	93	88.412	ENSACIG00000001500	smarcal1	97	83.802	Amphilophus_citrinellus
ENSAPEG00000015861	SMARCAL1	98	98.551	ENSAOCG00000014266	SMARCAL1	99	98.551	Amphiprion_ocellaris
ENSAPEG00000015861	SMARCAL1	99	85.259	ENSATEG00000020624	SMARCAL1	99	81.264	Anabas_testudineus
ENSAPEG00000015861	SMARCAL1	99	60.465	ENSACAG00000004612	SMARCAL1	93	60.465	Anolis_carolinensis
ENSAPEG00000015861	SMARCAL1	98	88.136	ENSACLG00000015990	SMARCAL1	99	82.281	Astatotilapia_calliptera
ENSAPEG00000015861	SMARCAL1	99	65.795	ENSAMXG00000003350	smarcal1	99	65.686	Astyanax_mexicanus
ENSAPEG00000015861	SMARCAL1	79	64.958	ENSCPBG00000013599	SMARCAL1	73	64.958	Chrysemys_picta_bellii
ENSAPEG00000015861	SMARCAL1	67	56.069	ENSCING00000009308	-	100	48.594	Ciona_intestinalis
ENSAPEG00000015861	SMARCAL1	97	73.855	ENSCSEG00000010785	SMARCAL1	99	73.855	Cynoglossus_semilaevis
ENSAPEG00000015861	SMARCAL1	99	83.858	ENSCVAG00000018780	SMARCAL1	99	74.480	Cyprinodon_variegatus
ENSAPEG00000015861	SMARCAL1	64	56.214	ENSEBUG00000011906	SMARCAL1	73	56.214	Eptatretus_burgeri
ENSAPEG00000015861	SMARCAL1	99	73.262	ENSELUG00000010440	-	99	71.447	Esox_lucius
ENSAPEG00000015861	SMARCAL1	75	65.698	ENSFALG00000003981	SMARCAL1	71	65.698	Ficedula_albicollis
ENSAPEG00000015861	SMARCAL1	99	81.496	ENSFHEG00000008380	SMARCAL1	99	74.890	Fundulus_heteroclitus
ENSAPEG00000015861	SMARCAL1	59	81.034	ENSGMOG00000010034	smarcal1	97	75.414	Gadus_morhua
ENSAPEG00000015861	SMARCAL1	96	66.359	ENSGALG00000011475	RPL37A	89	66.359	Gallus_gallus
ENSAPEG00000015861	SMARCAL1	81	83.551	ENSGACG00000006073	SMARCAL1	100	86.220	Gasterosteus_aculeatus
ENSAPEG00000015861	SMARCAL1	72	67.481	ENSGAGG00000015660	SMARCAL1	71	67.481	Gopherus_agassizii
ENSAPEG00000015861	SMARCAL1	98	87.288	ENSHBUG00000002973	smarcal1	99	82.000	Haplochromis_burtoni
ENSAPEG00000015861	SMARCAL1	95	72.414	ENSHCOG00000017921	smarcal1	98	72.184	Hippocampus_comes
ENSAPEG00000015861	SMARCAL1	97	78.029	ENSKMAG00000012023	SMARCAL1	99	78.029	Kryptolebias_marmoratus
ENSAPEG00000015861	SMARCAL1	86	88.360	ENSLBEG00000022915	smarcal1	100	84.341	Labrus_bergylta
ENSAPEG00000015861	SMARCAL1	90	87.879	ENSLBEG00000003493	smarcal1	100	79.742	Labrus_bergylta
ENSAPEG00000015861	SMARCAL1	99	51.411	ENSLACG00000010974	SMARCAL1	99	51.603	Latimeria_chalumnae
ENSAPEG00000015861	SMARCAL1	92	77.005	ENSLOCG00000009637	smarcal1	91	77.005	Lepisosteus_oculatus
ENSAPEG00000015861	SMARCAL1	98	83.913	ENSMAMG00000000828	SMARCAL1	99	78.889	Mastacembelus_armatus
ENSAPEG00000015861	SMARCAL1	98	88.136	ENSMZEG00005007660	SMARCAL1	99	82.171	Maylandia_zebra
ENSAPEG00000015861	SMARCAL1	96	66.359	ENSMGAG00000011658	SMARCAL1	88	66.359	Meleagris_gallopavo
ENSAPEG00000015861	SMARCAL1	86	89.730	ENSMMOG00000003842	smarcal1	93	82.284	Mola_mola
ENSAPEG00000015861	SMARCAL1	78	59.751	ENSMODG00000015544	SMARCAL1	75	59.751	Monodelphis_domestica
ENSAPEG00000015861	SMARCAL1	93	87.535	ENSNBRG00000016273	smarcal1	97	83.533	Neolamprologus_brichardi
ENSAPEG00000015861	SMARCAL1	91	68.715	ENSMEUG00000004395	SMARCAL1	91	68.715	Notamacropus_eugenii
ENSAPEG00000015861	SMARCAL1	98	86.017	ENSONIG00000009036	smarcal1	100	89.035	Oreochromis_niloticus
ENSAPEG00000015861	SMARCAL1	99	74.348	ENSORLG00000016455	SMARCAL1	99	74.348	Oryzias_latipes
ENSAPEG00000015861	SMARCAL1	99	74.565	ENSORLG00020001610	SMARCAL1	99	74.565	Oryzias_latipes_hni
ENSAPEG00000015861	SMARCAL1	99	74.565	ENSORLG00015001865	SMARCAL1	99	74.565	Oryzias_latipes_hsok
ENSAPEG00000015861	SMARCAL1	99	78.125	ENSOMEG00000001845	smarcal1	99	74.809	Oryzias_melastigma
ENSAPEG00000015861	SMARCAL1	99	76.154	ENSPMGG00000019092	SMARCAL1	99	72.451	Periophthalmus_magnuspinnatus
ENSAPEG00000015861	SMARCAL1	78	59.861	ENSPCIG00000022514	SMARCAL1	72	62.212	Phascolarctos_cinereus
ENSAPEG00000015861	SMARCAL1	99	80.159	ENSPFOG00000000560	SMARCAL1	99	75.272	Poecilia_formosa
ENSAPEG00000015861	SMARCAL1	99	80.159	ENSPMEG00000018146	SMARCAL1	99	75.490	Poecilia_mexicana
ENSAPEG00000015861	SMARCAL1	64	88.506	ENSPREG00000009591	SMARCAL1	97	86.111	Poecilia_reticulata
ENSAPEG00000015861	SMARCAL1	99	66.085	ENSPNAG00000014900	smarcal1	94	66.085	Pygocentrus_nattereri
ENSAPEG00000015861	SMARCAL1	99	58.915	ENSSHAG00000013538	SMARCAL1	79	57.873	Sarcophilus_harrisii
ENSAPEG00000015861	SMARCAL1	99	79.892	ENSSMAG00000010427	SMARCAL1	99	79.892	Scophthalmus_maximus
ENSAPEG00000015861	SMARCAL1	97	90.265	ENSSDUG00000017470	SMARCAL1	95	83.763	Seriola_dumerili
ENSAPEG00000015861	SMARCAL1	99	82.372	ENSSLDG00000007224	SMARCAL1	99	82.372	Seriola_lalandi_dorsalis
ENSAPEG00000015861	SMARCAL1	83	62.047	ENSSPUG00000015369	SMARCAL1	74	63.624	Sphenodon_punctatus
ENSAPEG00000015861	SMARCAL1	92	93.583	ENSSPAG00000003742	smarcal1	99	83.608	Stegastes_partitus
ENSAPEG00000015861	SMARCAL1	76	57.819	ENSSSCG00000035501	SMARCAL1	76	58.250	Sus_scrofa
ENSAPEG00000015861	SMARCAL1	74	64.170	ENSTGUG00000005079	SMARCAL1	99	64.170	Taeniopygia_guttata
ENSAPEG00000015861	SMARCAL1	98	65.188	ENSTRUG00000010701	SMARCAL1	99	65.188	Takifugu_rubripes
ENSAPEG00000015861	SMARCAL1	99	47.068	ENSTTRG00000009001	SMARCAL1	99	44.479	Tursiops_truncatus
ENSAPEG00000015861	SMARCAL1	99	62.745	ENSXETG00000000465	smarcal1	99	56.166	Xenopus_tropicalis