EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPEG00000015927 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Minus strand
Length: 18285 bases
Position: chr24:11694318-11712602
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000022379	RRM_1	PF00076.22	2.3e-33	1	2
ENSAPEP00000022379	RRM_1	PF00076.22	2.3e-33	2	2
ENSAPEP00000022332	RRM_1	PF00076.22	4.1e-33	1	2
ENSAPEP00000022332	RRM_1	PF00076.22	4.1e-33	2	2
ENSAPEP00000022345	RRM_1	PF00076.22	4.1e-33	1	2
ENSAPEP00000022345	RRM_1	PF00076.22	4.1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000022971	-	1290	-	ENSAPEP00000022379	429 (aa)	-	-
ENSAPET00000022938	-	5144	-	ENSAPEP00000022345	521 (aa)	-	-
ENSAPET00000022923	-	4944	-	ENSAPEP00000022332	521 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000015927's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000015927's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPEG00000015927	pspc1	77	61.787	ENSAPEG00000016556	sfpq	54	61.804
ENSAPEG00000015927	pspc1	68	64.045	ENSAPEG00000011383	nono	87	63.483

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000015927	pspc1	79	73.256	ENSG00000121390	PSPC1	82	80.556	Homo_sapiens
ENSAPEG00000015927	pspc1	100	97.893	ENSAPOG00000015946	pspc1	100	97.893	Acanthochromis_polyacanthus
ENSAPEG00000015927	pspc1	88	68.116	ENSAMEG00000017420	PSPC1	88	71.277	Ailuropoda_melanoleuca
ENSAPEG00000015927	pspc1	100	79.846	ENSACIG00000018695	pspc1	100	78.887	Amphilophus_citrinellus
ENSAPEG00000015927	pspc1	100	100.000	ENSAOCG00000005279	pspc1	100	100.000	Amphiprion_ocellaris
ENSAPEG00000015927	pspc1	100	76.850	ENSATEG00000004878	pspc1	100	76.660	Anabas_testudineus
ENSAPEG00000015927	pspc1	69	66.486	ENSAPLG00000003643	SFPQ	86	56.604	Anas_platyrhynchos
ENSAPEG00000015927	pspc1	76	67.626	ENSAPLG00000006246	PSPC1	100	68.281	Anas_platyrhynchos
ENSAPEG00000015927	pspc1	88	67.850	ENSACAG00000002093	PSPC1	91	67.339	Anolis_carolinensis
ENSAPEG00000015927	pspc1	60	71.042	ENSACAG00000013307	-	66	53.275	Anolis_carolinensis
ENSAPEG00000015927	pspc1	87	68.973	ENSANAG00000000059	PSPC1	83	78.086	Aotus_nancymaae
ENSAPEG00000015927	pspc1	100	77.969	ENSACLG00000027220	pspc1	100	77.143	Astatotilapia_calliptera
ENSAPEG00000015927	pspc1	100	67.593	ENSAMXG00000036881	pspc1	100	68.333	Astyanax_mexicanus
ENSAPEG00000015927	pspc1	87	69.409	ENSBTAG00000003934	PSPC1	89	70.638	Bos_taurus
ENSAPEG00000015927	pspc1	88	68.750	ENSCJAG00000004554	PSPC1	88	71.064	Callithrix_jacchus
ENSAPEG00000015927	pspc1	79	73.256	ENSCAFG00020002009	PSPC1	83	80.556	Canis_lupus_dingo
ENSAPEG00000015927	pspc1	87	69.409	ENSCHIG00000016708	PSPC1	89	70.638	Capra_hircus
ENSAPEG00000015927	pspc1	76	63.350	ENSTSYG00000032882	PSPC1	88	62.927	Carlito_syrichta
ENSAPEG00000015927	pspc1	79	73.256	ENSCPOG00000000395	PSPC1	83	80.556	Cavia_porcellus
ENSAPEG00000015927	pspc1	87	68.973	ENSCCAG00000033498	PSPC1	88	71.277	Cebus_capucinus
ENSAPEG00000015927	pspc1	79	73.023	ENSCATG00000036434	PSPC1	90	80.556	Cercocebus_atys
ENSAPEG00000015927	pspc1	67	73.641	ENSCLAG00000005241	PSPC1	89	70.343	Chinchilla_lanigera
ENSAPEG00000015927	pspc1	82	66.742	ENSCHOG00000008913	PSPC1	91	65.839	Choloepus_hoffmanni
ENSAPEG00000015927	pspc1	89	67.909	ENSCPBG00000020859	PSPC1	90	68.476	Chrysemys_picta_bellii
ENSAPEG00000015927	pspc1	59	60.630	ENSCSAVG00000003533	-	52	61.372	Ciona_savignyi
ENSAPEG00000015927	pspc1	65	68.231	ENSCANG00000018948	PSPC1	87	82.061	Colobus_angolensis_palliatus
ENSAPEG00000015927	pspc1	85	69.584	ENSCGRG00001018368	Pspc1	88	70.726	Cricetulus_griseus_chok1gshd
ENSAPEG00000015927	pspc1	85	69.584	ENSCGRG00000011724	Pspc1	88	70.726	Cricetulus_griseus_crigri
ENSAPEG00000015927	pspc1	100	78.161	ENSCVAG00000007679	-	100	78.161	Cyprinodon_variegatus
ENSAPEG00000015927	pspc1	100	63.941	ENSDARG00000006621	pspc1	100	69.212	Danio_rerio
ENSAPEG00000015927	pspc1	80	72.893	ENSDNOG00000011078	PSPC1	91	69.628	Dasypus_novemcinctus
ENSAPEG00000015927	pspc1	85	67.100	ENSDORG00000016050	Pspc1	90	67.292	Dipodomys_ordii
ENSAPEG00000015927	pspc1	68	44.860	ENSEBUG00000010133	pspc1	78	46.465	Eptatretus_burgeri
ENSAPEG00000015927	pspc1	79	61.722	ENSEBUG00000003964	-	64	66.482	Eptatretus_burgeri
ENSAPEG00000015927	pspc1	79	73.488	ENSEASG00005000119	PSPC1	83	80.556	Equus_asinus_asinus
ENSAPEG00000015927	pspc1	79	73.488	ENSECAG00000017286	PSPC1	83	80.556	Equus_caballus
ENSAPEG00000015927	pspc1	61	70.385	ENSEEUG00000011288	-	51	70.385	Erinaceus_europaeus
ENSAPEG00000015927	pspc1	100	67.391	ENSELUG00000003746	pspc1	100	68.750	Esox_lucius
ENSAPEG00000015927	pspc1	79	73.488	ENSFCAG00000027841	PSPC1	83	80.556	Felis_catus
ENSAPEG00000015927	pspc1	99	62.894	ENSFALG00000008750	PSPC1	90	68.247	Ficedula_albicollis
ENSAPEG00000015927	pspc1	88	68.344	ENSFDAG00000002617	PSPC1	90	70.378	Fukomys_damarensis
ENSAPEG00000015927	pspc1	100	64.218	ENSGMOG00000015074	pspc1	100	64.595	Gadus_morhua
ENSAPEG00000015927	pspc1	88	68.776	ENSGALG00000017142	PSPC1	90	68.685	Gallus_gallus
ENSAPEG00000015927	pspc1	96	68.692	ENSGAFG00000006327	pspc1	81	81.378	Gambusia_affinis
ENSAPEG00000015927	pspc1	100	75.954	ENSGACG00000014901	pspc1	95	83.481	Gasterosteus_aculeatus
ENSAPEG00000015927	pspc1	71	65.426	ENSGAGG00000017325	-	65	59.719	Gopherus_agassizii
ENSAPEG00000015927	pspc1	89	67.909	ENSGAGG00000019164	PSPC1	90	68.476	Gopherus_agassizii
ENSAPEG00000015927	pspc1	79	73.256	ENSGGOG00000003414	PSPC1	82	80.556	Gorilla_gorilla
ENSAPEG00000015927	pspc1	100	86.564	ENSHBUG00000001139	pspc1	100	87.140	Haplochromis_burtoni
ENSAPEG00000015927	pspc1	79	73.488	ENSHGLG00000018811	PSPC1	89	70.378	Heterocephalus_glaber_female
ENSAPEG00000015927	pspc1	64	76.173	ENSHGLG00100007962	PSPC1	92	78.000	Heterocephalus_glaber_male
ENSAPEG00000015927	pspc1	79	78.795	ENSHCOG00000013251	pspc1	99	73.942	Hippocampus_comes
ENSAPEG00000015927	pspc1	100	70.225	ENSIPUG00000013192	pspc1	100	69.501	Ictalurus_punctatus
ENSAPEG00000015927	pspc1	90	65.116	ENSSTOG00000026833	PSPC1	82	80.556	Ictidomys_tridecemlineatus
ENSAPEG00000015927	pspc1	76	74.939	ENSJJAG00000018334	Pspc1	88	70.638	Jaculus_jaculus
ENSAPEG00000015927	pspc1	100	62.095	ENSKMAG00000013525	-	98	72.316	Kryptolebias_marmoratus
ENSAPEG00000015927	pspc1	99	78.839	ENSLBEG00000004474	pspc1	100	78.839	Labrus_bergylta
ENSAPEG00000015927	pspc1	91	64.128	ENSLACG00000010762	PSPC1	100	62.340	Latimeria_chalumnae
ENSAPEG00000015927	pspc1	92	69.899	ENSLOCG00000010832	pspc1	99	68.030	Lepisosteus_oculatus
ENSAPEG00000015927	pspc1	82	71.910	ENSLAFG00000010968	PSPC1	91	69.485	Loxodonta_africana
ENSAPEG00000015927	pspc1	79	73.023	ENSMFAG00000032728	PSPC1	91	80.615	Macaca_fascicularis
ENSAPEG00000015927	pspc1	79	73.023	ENSMMUG00000020262	PSPC1	88	80.556	Macaca_mulatta
ENSAPEG00000015927	pspc1	79	73.023	ENSMNEG00000027401	PSPC1	85	75.931	Macaca_nemestrina
ENSAPEG00000015927	pspc1	67	72.826	ENSMLEG00000039043	PSPC1	94	70.343	Mandrillus_leucophaeus
ENSAPEG00000015927	pspc1	100	84.369	ENSMAMG00000004333	pspc1	100	84.181	Mastacembelus_armatus
ENSAPEG00000015927	pspc1	100	77.969	ENSMZEG00005005726	pspc1	100	77.143	Maylandia_zebra
ENSAPEG00000015927	pspc1	77	67.464	ENSMGAG00000015134	PSPC1	100	68.193	Meleagris_gallopavo
ENSAPEG00000015927	pspc1	89	65.707	ENSMAUG00000021067	Pspc1	86	67.892	Mesocricetus_auratus
ENSAPEG00000015927	pspc1	92	68.347	ENSMICG00000013970	PSPC1	83	80.556	Microcebus_murinus
ENSAPEG00000015927	pspc1	78	73.684	ENSMOCG00000006060	Pspc1	90	69.665	Microtus_ochrogaster
ENSAPEG00000015927	pspc1	80	85.714	ENSMMOG00000004352	pspc1	71	85.714	Mola_mola
ENSAPEG00000015927	pspc1	81	72.540	ENSMODG00000008029	PSPC1	66	75.669	Monodelphis_domestica
ENSAPEG00000015927	pspc1	100	84.645	ENSMALG00000008914	pspc1	100	84.453	Monopterus_albus
ENSAPEG00000015927	pspc1	81	72.018	MGP_CAROLIEiJ_G0019341	Pspc1	89	74.519	Mus_caroli
ENSAPEG00000015927	pspc1	81	72.018	ENSMUSG00000021938	Pspc1	88	74.638	Mus_musculus
ENSAPEG00000015927	pspc1	81	72.018	MGP_PahariEiJ_G0030359	Pspc1	89	74.519	Mus_pahari
ENSAPEG00000015927	pspc1	81	72.018	MGP_SPRETEiJ_G0020232	Pspc1	88	74.638	Mus_spretus
ENSAPEG00000015927	pspc1	79	73.256	ENSMPUG00000013347	PSPC1	88	71.277	Mustela_putorius_furo
ENSAPEG00000015927	pspc1	79	72.979	ENSMLUG00000017663	PSPC1	89	70.402	Myotis_lucifugus
ENSAPEG00000015927	pspc1	93	67.677	ENSNGAG00000011271	Pspc1	88	70.299	Nannospalax_galili
ENSAPEG00000015927	pspc1	100	78.009	ENSNBRG00000014059	pspc1	99	76.620	Neolamprologus_brichardi
ENSAPEG00000015927	pspc1	79	73.256	ENSNLEG00000001294	PSPC1	88	71.064	Nomascus_leucogenys
ENSAPEG00000015927	pspc1	61	70.000	ENSMEUG00000000476	PSPC1	72	75.773	Notamacropus_eugenii
ENSAPEG00000015927	pspc1	88	63.866	ENSODEG00000019012	-	88	65.966	Octodon_degus
ENSAPEG00000015927	pspc1	88	60.465	ENSODEG00000007817	-	88	59.874	Octodon_degus
ENSAPEG00000015927	pspc1	100	87.908	ENSONIG00000012010	pspc1	99	88.292	Oreochromis_niloticus
ENSAPEG00000015927	pspc1	67	72.826	ENSOANG00000009017	-	100	69.608	Ornithorhynchus_anatinus
ENSAPEG00000015927	pspc1	81	58.908	ENSOANG00000011381	-	95	55.187	Ornithorhynchus_anatinus
ENSAPEG00000015927	pspc1	79	72.897	ENSOCUG00000006153	PSPC1	88	70.638	Oryctolagus_cuniculus
ENSAPEG00000015927	pspc1	100	78.394	ENSORLG00000004232	-	100	77.820	Oryzias_latipes
ENSAPEG00000015927	pspc1	100	79.159	ENSORLG00020000578	PSPC1	100	76.908	Oryzias_latipes_hni
ENSAPEG00000015927	pspc1	100	78.776	ENSORLG00015017480	pspc1	100	78.203	Oryzias_latipes_hsok
ENSAPEG00000015927	pspc1	79	73.488	ENSOGAG00000012643	PSPC1	88	71.064	Otolemur_garnettii
ENSAPEG00000015927	pspc1	78	73.131	ENSOARG00000014163	PSPC1	95	70.299	Ovis_aries
ENSAPEG00000015927	pspc1	77	70.482	ENSPPAG00000009836	PSPC1	92	80.556	Pan_paniscus
ENSAPEG00000015927	pspc1	79	73.488	ENSPPRG00000008833	PSPC1	88	71.064	Panthera_pardus
ENSAPEG00000015927	pspc1	67	73.098	ENSPTIG00000016917	PSPC1	84	70.343	Panthera_tigris_altaica
ENSAPEG00000015927	pspc1	76	75.182	ENSPTRG00000005677	PSPC1	82	80.556	Pan_troglodytes
ENSAPEG00000015927	pspc1	79	73.023	ENSPANG00000001992	PSPC1	89	80.615	Papio_anubis
ENSAPEG00000015927	pspc1	100	69.346	ENSPKIG00000003578	pspc1	100	70.391	Paramormyrops_kingsleyae
ENSAPEG00000015927	pspc1	91	66.667	ENSPSIG00000005168	PSPC1	90	67.495	Pelodiscus_sinensis
ENSAPEG00000015927	pspc1	76	73.795	ENSPMGG00000015135	pspc1	98	74.859	Periophthalmus_magnuspinnatus
ENSAPEG00000015927	pspc1	81	72.018	ENSPEMG00000015214	Pspc1	90	69.874	Peromyscus_maniculatus_bairdii
ENSAPEG00000015927	pspc1	65	44.792	ENSPMAG00000004618	pspc1	87	44.211	Petromyzon_marinus
ENSAPEG00000015927	pspc1	84	70.833	ENSPCIG00000017680	PSPC1	88	70.378	Phascolarctos_cinereus
ENSAPEG00000015927	pspc1	99	80.651	ENSPFOG00000003362	pspc1	100	81.226	Poecilia_formosa
ENSAPEG00000015927	pspc1	100	80.645	ENSPLAG00000011540	pspc1	100	81.214	Poecilia_latipinna
ENSAPEG00000015927	pspc1	83	54.338	ENSPLAG00000004407	-	56	53.528	Poecilia_latipinna
ENSAPEG00000015927	pspc1	100	80.266	ENSPMEG00000008322	pspc1	100	80.835	Poecilia_mexicana
ENSAPEG00000015927	pspc1	83	54.462	ENSPMEG00000001025	-	55	53.528	Poecilia_mexicana
ENSAPEG00000015927	pspc1	100	79.886	ENSPREG00000007786	pspc1	100	80.455	Poecilia_reticulata
ENSAPEG00000015927	pspc1	79	73.256	ENSPPYG00000005186	PSPC1	85	76.179	Pongo_abelii
ENSAPEG00000015927	pspc1	88	66.170	ENSPCOG00000014364	PSPC1	88	67.763	Propithecus_coquereli
ENSAPEG00000015927	pspc1	88	69.280	ENSPVAG00000005036	PSPC1	92	68.098	Pteropus_vampyrus
ENSAPEG00000015927	pspc1	100	78.352	ENSPNYG00000008893	pspc1	100	77.524	Pundamilia_nyererei
ENSAPEG00000015927	pspc1	100	70.113	ENSPNAG00000016511	pspc1	100	70.998	Pygocentrus_nattereri
ENSAPEG00000015927	pspc1	81	71.889	ENSRNOG00000020782	Pspc1	88	74.818	Rattus_norvegicus
ENSAPEG00000015927	pspc1	84	70.460	ENSRBIG00000036057	PSPC1	91	80.556	Rhinopithecus_bieti
ENSAPEG00000015927	pspc1	84	70.460	ENSRROG00000036334	PSPC1	82	80.556	Rhinopithecus_roxellana
ENSAPEG00000015927	pspc1	69	63.613	ENSSBOG00000028172	PSPC1	90	78.261	Saimiri_boliviensis_boliviensis
ENSAPEG00000015927	pspc1	84	67.769	ENSSHAG00000004696	PSPC1	88	66.318	Sarcophilus_harrisii
ENSAPEG00000015927	pspc1	88	73.729	ENSSFOG00015001395	pspc1	99	76.119	Scleropages_formosus
ENSAPEG00000015927	pspc1	100	83.865	ENSSMAG00000001761	pspc1	100	83.114	Scophthalmus_maximus
ENSAPEG00000015927	pspc1	100	85.185	ENSSDUG00000010651	pspc1	100	86.296	Seriola_dumerili
ENSAPEG00000015927	pspc1	100	76.245	ENSSLDG00000004284	pspc1	100	75.712	Seriola_lalandi_dorsalis
ENSAPEG00000015927	pspc1	76	69.343	ENSSARG00000000888	PSPC1	88	65.096	Sorex_araneus
ENSAPEG00000015927	pspc1	80	68.588	ENSSPUG00000008550	PSPC1	88	60.341	Sphenodon_punctatus
ENSAPEG00000015927	pspc1	86	51.754	ENSSPUG00000001136	-	59	53.102	Sphenodon_punctatus
ENSAPEG00000015927	pspc1	100	93.208	ENSSPAG00000001921	pspc1	100	92.830	Stegastes_partitus
ENSAPEG00000015927	pspc1	79	73.256	ENSSSCG00000009569	PSPC1	85	79.697	Sus_scrofa
ENSAPEG00000015927	pspc1	88	68.842	ENSTGUG00000011295	PSPC1	99	69.427	Taeniopygia_guttata
ENSAPEG00000015927	pspc1	100	75.479	ENSTRUG00000011335	pspc1	100	74.521	Takifugu_rubripes
ENSAPEG00000015927	pspc1	100	74.472	ENSTNIG00000010358	pspc1	100	74.472	Tetraodon_nigroviridis
ENSAPEG00000015927	pspc1	87	60.515	ENSTBEG00000002361	PSPC1	88	59.916	Tupaia_belangeri
ENSAPEG00000015927	pspc1	85	69.869	ENSTTRG00000003343	PSPC1	90	70.588	Tursiops_truncatus
ENSAPEG00000015927	pspc1	71	72.131	ENSUAMG00000012309	PSPC1	82	81.053	Ursus_americanus
ENSAPEG00000015927	pspc1	84	70.241	ENSUMAG00000013993	PSPC1	91	80.247	Ursus_maritimus
ENSAPEG00000015927	pspc1	67	73.098	ENSVPAG00000010029	PSPC1	100	70.098	Vicugna_pacos
ENSAPEG00000015927	pspc1	79	73.256	ENSVVUG00000006414	PSPC1	84	80.556	Vulpes_vulpes
ENSAPEG00000015927	pspc1	96	71.084	ENSXCOG00000017438	pspc1	93	81.888	Xiphophorus_couchianus
ENSAPEG00000015927	pspc1	96	71.325	ENSXMAG00000007929	pspc1	93	82.143	Xiphophorus_maculatus