EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPEG00000016105 (Gene tree)
Gene ID: -
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Plus strand
Length: 36889 bases
Position: chr13:7959035-7995923
Accession: ZDB-GENE-030131-5286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000022787	RNA_pol_Rpb1_5	PF04998.17	1e-99	1	1
ENSAPEP00000022749	RNA_pol_Rpb1_5	PF04998.17	1.3e-99	1	1
ENSAPEP00000022749	RNA_pol_Rpb1_4	PF05000.17	6.1e-21	1	1
ENSAPEP00000022787	RNA_pol_Rpb1_4	PF05000.17	1.5e-20	1	1
ENSAPEP00000022787	RNA_pol_Rpb1_2	PF00623.20	1.5e-68	1	1
ENSAPEP00000022749	RNA_pol_Rpb1_2	PF00623.20	1.7e-68	1	1
ENSAPEP00000022787	RNA_pol_Rpb1_3	PF04983.18	1.2e-37	1	1
ENSAPEP00000022749	RNA_pol_Rpb1_3	PF04983.18	1.7e-37	1	1
ENSAPEP00000022749	RNA_pol_Rpb1_1	PF04997.12	1.6e-22	1	1
ENSAPEP00000022787	RNA_pol_Rpb1_1	PF04997.12	5.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000023349	-	6549	-	ENSAPEP00000022749	1690 (aa)	-	-
ENSAPET00000023388	-	4791	-	ENSAPEP00000022787	1596 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000016105's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000016105's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPEG00000016105	polr1a	63	32.799	ENSAPEG00000001966	-	73	32.799
ENSAPEG00000016105	polr1a	63	32.799	ENSAPEG00000013351	polr3a	78	32.799
ENSAPEG00000016105	polr1a	72	33.012	ENSAPEG00000012623	polr2a	58	33.048

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000016105	polr1a	100	65.933	ENSG00000068654	POLR1A	100	65.714	Homo_sapiens
ENSAPEG00000016105	polr1a	69	97.528	ENSAPOG00000017945	polr1a	99	97.528	Acanthochromis_polyacanthus
ENSAPEG00000016105	polr1a	100	66.667	ENSAMEG00000005807	POLR1A	100	69.521	Ailuropoda_melanoleuca
ENSAPEG00000016105	polr1a	100	83.827	ENSACIG00000022147	polr1a	100	83.292	Amphilophus_citrinellus
ENSAPEG00000016105	polr1a	100	99.763	ENSAOCG00000017336	polr1a	100	99.763	Amphiprion_ocellaris
ENSAPEG00000016105	polr1a	98	91.667	ENSATEG00000016773	polr1a	100	87.382	Anabas_testudineus
ENSAPEG00000016105	polr1a	88	67.122	ENSAPLG00000013871	POLR1A	99	67.226	Anas_platyrhynchos
ENSAPEG00000016105	polr1a	97	70.213	ENSACAG00000012141	POLR1A	99	65.046	Anolis_carolinensis
ENSAPEG00000016105	polr1a	98	75.000	ENSANAG00000033927	POLR1A	95	75.000	Aotus_nancymaae
ENSAPEG00000016105	polr1a	97	86.842	ENSACLG00000020541	polr1a	100	79.388	Astatotilapia_calliptera
ENSAPEG00000016105	polr1a	98	72.535	ENSBTAG00000006481	POLR1A	94	72.535	Bos_taurus
ENSAPEG00000016105	polr1a	99	38.192	WBGene00012999	rpoa-1	98	38.514	Caenorhabditis_elegans
ENSAPEG00000016105	polr1a	98	75.000	ENSCJAG00000019547	POLR1A	95	75.000	Callithrix_jacchus
ENSAPEG00000016105	polr1a	98	73.611	ENSCAFG00000007613	POLR1A	95	73.611	Canis_familiaris
ENSAPEG00000016105	polr1a	98	73.611	ENSCAFG00020014752	POLR1A	94	73.611	Canis_lupus_dingo
ENSAPEG00000016105	polr1a	98	72.535	ENSCHIG00000018204	POLR1A	94	72.535	Capra_hircus
ENSAPEG00000016105	polr1a	98	73.239	ENSTSYG00000002761	POLR1A	94	73.239	Carlito_syrichta
ENSAPEG00000016105	polr1a	93	76.596	ENSCAPG00000010132	POLR1A	90	76.596	Cavia_aperea
ENSAPEG00000016105	polr1a	98	73.427	ENSCPOG00000012350	POLR1A	94	73.427	Cavia_porcellus
ENSAPEG00000016105	polr1a	98	75.000	ENSCCAG00000019839	POLR1A	95	75.000	Cebus_capucinus
ENSAPEG00000016105	polr1a	98	74.306	ENSCATG00000029786	POLR1A	95	74.306	Cercocebus_atys
ENSAPEG00000016105	polr1a	98	74.306	ENSCLAG00000005187	POLR1A	94	74.306	Chinchilla_lanigera
ENSAPEG00000016105	polr1a	98	74.306	ENSCSAG00000016251	POLR1A	95	74.306	Chlorocebus_sabaeus
ENSAPEG00000016105	polr1a	98	72.857	ENSCPBG00000001115	POLR1A	94	72.857	Chrysemys_picta_bellii
ENSAPEG00000016105	polr1a	94	55.432	ENSCSAVG00000007184	-	99	47.393	Ciona_savignyi
ENSAPEG00000016105	polr1a	98	73.611	ENSCANG00000031785	POLR1A	94	73.611	Colobus_angolensis_palliatus
ENSAPEG00000016105	polr1a	94	72.222	ENSCGRG00001006651	Polr1a	94	72.222	Cricetulus_griseus_chok1gshd
ENSAPEG00000016105	polr1a	64	65.073	ENSCGRG00000010834	Polr1a	100	64.951	Cricetulus_griseus_crigri
ENSAPEG00000016105	polr1a	100	78.450	ENSCSEG00000020190	polr1a	100	78.332	Cynoglossus_semilaevis
ENSAPEG00000016105	polr1a	100	82.422	ENSCVAG00000020941	polr1a	100	82.298	Cyprinodon_variegatus
ENSAPEG00000016105	polr1a	98	77.083	ENSDARG00000098375	polr1a	100	72.238	Danio_rerio
ENSAPEG00000016105	polr1a	98	70.833	ENSDNOG00000010829	POLR1A	94	70.833	Dasypus_novemcinctus
ENSAPEG00000016105	polr1a	96	72.222	ENSDORG00000008298	Polr1a	100	64.885	Dipodomys_ordii
ENSAPEG00000016105	polr1a	72	90.625	ENSETEG00000000412	-	71	90.625	Echinops_telfairi
ENSAPEG00000016105	polr1a	89	47.386	ENSEBUG00000005667	-	99	47.732	Eptatretus_burgeri
ENSAPEG00000016105	polr1a	98	73.611	ENSEASG00005001625	POLR1A	95	73.611	Equus_asinus_asinus
ENSAPEG00000016105	polr1a	98	73.611	ENSECAG00000036306	-	99	70.186	Equus_caballus
ENSAPEG00000016105	polr1a	98	73.611	ENSECAG00000010092	POLR1A	99	70.186	Equus_caballus
ENSAPEG00000016105	polr1a	98	73.611	ENSECAG00000030510	-	99	70.186	Equus_caballus
ENSAPEG00000016105	polr1a	85	77.389	ENSEEUG00000000676	POLR1A	85	77.389	Erinaceus_europaeus
ENSAPEG00000016105	polr1a	98	85.417	ENSELUG00000012769	polr1a	93	85.417	Esox_lucius
ENSAPEG00000016105	polr1a	100	66.241	ENSFCAG00000008966	POLR1A	100	66.357	Felis_catus
ENSAPEG00000016105	polr1a	97	70.229	ENSFALG00000010082	POLR1A	99	66.060	Ficedula_albicollis
ENSAPEG00000016105	polr1a	97	74.306	ENSFDAG00000013726	POLR1A	94	74.306	Fukomys_damarensis
ENSAPEG00000016105	polr1a	100	79.752	ENSFHEG00000005996	polr1a	100	79.152	Fundulus_heteroclitus
ENSAPEG00000016105	polr1a	100	71.446	ENSGMOG00000002230	polr1a	100	71.279	Gadus_morhua
ENSAPEG00000016105	polr1a	87	67.857	ENSGALG00000038160	-	98	63.514	Gallus_gallus
ENSAPEG00000016105	polr1a	100	80.700	ENSGAFG00000015266	polr1a	100	80.479	Gambusia_affinis
ENSAPEG00000016105	polr1a	98	86.014	ENSGACG00000018791	polr1a	100	80.417	Gasterosteus_aculeatus
ENSAPEG00000016105	polr1a	89	68.483	ENSGAGG00000004984	-	96	72.010	Gopherus_agassizii
ENSAPEG00000016105	polr1a	100	66.049	ENSGGOG00000001788	POLR1A	100	65.594	Gorilla_gorilla
ENSAPEG00000016105	polr1a	90	81.834	ENSHBUG00000020021	polr1a	98	84.252	Haplochromis_burtoni
ENSAPEG00000016105	polr1a	98	73.611	ENSHGLG00000006334	POLR1A	94	73.611	Heterocephalus_glaber_female
ENSAPEG00000016105	polr1a	98	73.611	ENSHGLG00100006614	POLR1A	94	73.611	Heterocephalus_glaber_male
ENSAPEG00000016105	polr1a	100	79.778	ENSHCOG00000003345	polr1a	100	79.778	Hippocampus_comes
ENSAPEG00000016105	polr1a	100	72.212	ENSIPUG00000013174	polr1a	100	71.921	Ictalurus_punctatus
ENSAPEG00000016105	polr1a	98	72.857	ENSSTOG00000012580	POLR1A	95	71.528	Ictidomys_tridecemlineatus
ENSAPEG00000016105	polr1a	98	73.611	ENSJJAG00000013113	Polr1a	94	73.611	Jaculus_jaculus
ENSAPEG00000016105	polr1a	100	86.391	ENSKMAG00000007399	polr1a	100	86.036	Kryptolebias_marmoratus
ENSAPEG00000016105	polr1a	100	83.933	ENSLBEG00000015401	polr1a	98	87.365	Labrus_bergylta
ENSAPEG00000016105	polr1a	53	71.118	ENSLACG00000003218	polr1a	100	71.118	Latimeria_chalumnae
ENSAPEG00000016105	polr1a	97	76.389	ENSLOCG00000010881	polr1a	100	71.702	Lepisosteus_oculatus
ENSAPEG00000016105	polr1a	100	66.146	ENSLAFG00000014948	POLR1A	100	66.474	Loxodonta_africana
ENSAPEG00000016105	polr1a	98	74.306	ENSMFAG00000046097	POLR1A	95	74.306	Macaca_fascicularis
ENSAPEG00000016105	polr1a	98	74.306	ENSMMUG00000015815	POLR1A	95	74.306	Macaca_mulatta
ENSAPEG00000016105	polr1a	98	74.306	ENSMNEG00000043313	POLR1A	95	74.306	Macaca_nemestrina
ENSAPEG00000016105	polr1a	98	74.306	ENSMLEG00000042428	POLR1A	95	74.306	Mandrillus_leucophaeus
ENSAPEG00000016105	polr1a	100	85.824	ENSMAMG00000016565	polr1a	100	85.588	Mastacembelus_armatus
ENSAPEG00000016105	polr1a	100	87.064	ENSMZEG00005004915	polr1a	100	86.466	Maylandia_zebra
ENSAPEG00000016105	polr1a	97	67.857	ENSMGAG00000013111	POLR1A	99	62.693	Meleagris_gallopavo
ENSAPEG00000016105	polr1a	91	65.635	ENSMAUG00000008497	Polr1a	99	65.734	Mesocricetus_auratus
ENSAPEG00000016105	polr1a	100	65.668	ENSMICG00000000757	POLR1A	100	66.050	Microcebus_murinus
ENSAPEG00000016105	polr1a	98	72.917	ENSMOCG00000000122	Polr1a	94	72.917	Microtus_ochrogaster
ENSAPEG00000016105	polr1a	100	80.952	ENSMMOG00000010216	polr1a	100	81.129	Mola_mola
ENSAPEG00000016105	polr1a	98	69.388	ENSMODG00000009335	POLR1A	94	69.388	Monodelphis_domestica
ENSAPEG00000016105	polr1a	98	90.278	ENSMALG00000013363	polr1a	100	85.697	Monopterus_albus
ENSAPEG00000016105	polr1a	97	71.528	MGP_CAROLIEiJ_G0028494	Polr1a	100	65.391	Mus_caroli
ENSAPEG00000016105	polr1a	97	70.139	ENSMUSG00000049553	Polr1a	100	65.023	Mus_musculus
ENSAPEG00000016105	polr1a	97	71.528	MGP_PahariEiJ_G0022230	Polr1a	100	65.605	Mus_pahari
ENSAPEG00000016105	polr1a	97	70.139	MGP_SPRETEiJ_G0029499	Polr1a	94	70.139	Mus_spretus
ENSAPEG00000016105	polr1a	100	66.647	ENSMPUG00000009135	POLR1A	100	66.589	Mustela_putorius_furo
ENSAPEG00000016105	polr1a	98	73.611	ENSMLUG00000015723	POLR1A	94	73.611	Myotis_lucifugus
ENSAPEG00000016105	polr1a	98	71.528	ENSNGAG00000017907	Polr1a	100	65.759	Nannospalax_galili
ENSAPEG00000016105	polr1a	100	86.718	ENSNBRG00000000519	polr1a	100	86.466	Neolamprologus_brichardi
ENSAPEG00000016105	polr1a	98	73.611	ENSNLEG00000002264	POLR1A	95	73.611	Nomascus_leucogenys
ENSAPEG00000016105	polr1a	75	84.252	ENSMEUG00000011665	-	75	84.252	Notamacropus_eugenii
ENSAPEG00000016105	polr1a	93	72.340	ENSOPRG00000008269	POLR1A	91	72.340	Ochotona_princeps
ENSAPEG00000016105	polr1a	98	72.917	ENSODEG00000003542	POLR1A	94	72.917	Octodon_degus
ENSAPEG00000016105	polr1a	100	86.671	ENSONIG00000015895	polr1a	100	86.318	Oreochromis_niloticus
ENSAPEG00000016105	polr1a	98	72.222	ENSOCUG00000010138	POLR1A	100	66.589	Oryctolagus_cuniculus
ENSAPEG00000016105	polr1a	100	82.683	ENSORLG00000008753	polr1a	99	82.388	Oryzias_latipes
ENSAPEG00000016105	polr1a	100	79.221	ENSORLG00020020726	polr1a	99	79.103	Oryzias_latipes_hni
ENSAPEG00000016105	polr1a	95	88.298	ENSORLG00015016071	polr1a	98	88.298	Oryzias_latipes_hsok
ENSAPEG00000016105	polr1a	98	74.306	ENSOGAG00000004031	POLR1A	100	66.010	Otolemur_garnettii
ENSAPEG00000016105	polr1a	98	72.535	ENSOARG00000020601	POLR1A	94	72.535	Ovis_aries
ENSAPEG00000016105	polr1a	100	65.875	ENSPPAG00000042450	POLR1A	100	65.422	Pan_paniscus
ENSAPEG00000016105	polr1a	100	65.493	ENSPPRG00000006702	POLR1A	100	66.299	Panthera_pardus
ENSAPEG00000016105	polr1a	100	65.095	ENSPTIG00000018783	POLR1A	100	65.838	Panthera_tigris_altaica
ENSAPEG00000016105	polr1a	100	65.875	ENSPTRG00000012147	POLR1A	100	65.422	Pan_troglodytes
ENSAPEG00000016105	polr1a	98	74.306	ENSPANG00000025908	POLR1A	95	74.306	Papio_anubis
ENSAPEG00000016105	polr1a	100	72.002	ENSPKIG00000005468	polr1a	98	75.735	Paramormyrops_kingsleyae
ENSAPEG00000016105	polr1a	67	65.688	ENSPSIG00000009321	-	99	66.110	Pelodiscus_sinensis
ENSAPEG00000016105	polr1a	55	82.035	ENSPMGG00000009718	polr1a	95	81.690	Periophthalmus_magnuspinnatus
ENSAPEG00000016105	polr1a	98	72.917	ENSPEMG00000022224	Polr1a	94	72.917	Peromyscus_maniculatus_bairdii
ENSAPEG00000016105	polr1a	92	72.917	ENSPCIG00000004222	POLR1A	92	72.917	Phascolarctos_cinereus
ENSAPEG00000016105	polr1a	100	82.933	ENSPFOG00000005025	polr1a	100	82.943	Poecilia_formosa
ENSAPEG00000016105	polr1a	100	82.902	ENSPLAG00000021389	polr1a	100	83.079	Poecilia_latipinna
ENSAPEG00000016105	polr1a	100	80.152	ENSPMEG00000006463	polr1a	100	80.526	Poecilia_mexicana
ENSAPEG00000016105	polr1a	100	82.573	ENSPREG00000002389	polr1a	100	82.787	Poecilia_reticulata
ENSAPEG00000016105	polr1a	100	65.991	ENSPPYG00000012217	POLR1A	100	65.307	Pongo_abelii
ENSAPEG00000016105	polr1a	86	78.009	ENSPCAG00000011582	POLR1A	85	66.000	Procavia_capensis
ENSAPEG00000016105	polr1a	100	65.861	ENSPCOG00000026987	POLR1A	100	65.709	Propithecus_coquereli
ENSAPEG00000016105	polr1a	93	72.917	ENSPVAG00000012674	POLR1A	95	66.420	Pteropus_vampyrus
ENSAPEG00000016105	polr1a	100	86.887	ENSPNYG00000000026	polr1a	100	86.288	Pundamilia_nyererei
ENSAPEG00000016105	polr1a	100	72.037	ENSPNAG00000019223	polr1a	100	71.960	Pygocentrus_nattereri
ENSAPEG00000016105	polr1a	97	71.528	ENSRNOG00000009545	Polr1a	100	65.873	Rattus_norvegicus
ENSAPEG00000016105	polr1a	98	74.306	ENSRBIG00000028335	POLR1A	95	74.306	Rhinopithecus_bieti
ENSAPEG00000016105	polr1a	98	74.306	ENSRROG00000031473	POLR1A	95	74.306	Rhinopithecus_roxellana
ENSAPEG00000016105	polr1a	95	43.885	YOR341W	RPA190	99	35.440	Saccharomyces_cerevisiae
ENSAPEG00000016105	polr1a	100	65.643	ENSSBOG00000030262	POLR1A	100	65.585	Saimiri_boliviensis_boliviensis
ENSAPEG00000016105	polr1a	98	70.548	ENSSHAG00000014739	POLR1A	93	70.548	Sarcophilus_harrisii
ENSAPEG00000016105	polr1a	100	71.220	ENSSFOG00015019716	polr1a	100	70.780	Scleropages_formosus
ENSAPEG00000016105	polr1a	100	85.647	ENSSMAG00000014342	polr1a	100	85.664	Scophthalmus_maximus
ENSAPEG00000016105	polr1a	98	93.750	ENSSDUG00000014631	polr1a	100	88.909	Seriola_dumerili
ENSAPEG00000016105	polr1a	100	86.768	ENSSLDG00000024095	polr1a	100	86.524	Seriola_lalandi_dorsalis
ENSAPEG00000016105	polr1a	71	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSAPEG00000016105	polr1a	98	72.414	ENSSPUG00000004215	POLR1A	98	73.000	Sphenodon_punctatus
ENSAPEG00000016105	polr1a	64	91.932	ENSSPAG00000016341	polr1a	95	91.818	Stegastes_partitus
ENSAPEG00000016105	polr1a	80	74.648	ENSSSCG00000008226	POLR1A	92	74.648	Sus_scrofa
ENSAPEG00000016105	polr1a	96	70.833	ENSTGUG00000010704	POLR1A	100	65.159	Taeniopygia_guttata
ENSAPEG00000016105	polr1a	98	88.889	ENSTRUG00000002210	polr1a	94	88.889	Takifugu_rubripes
ENSAPEG00000016105	polr1a	98	88.889	ENSTNIG00000010116	polr1a	94	88.889	Tetraodon_nigroviridis
ENSAPEG00000016105	polr1a	73	84.071	ENSTBEG00000008646	POLR1A	74	84.071	Tupaia_belangeri
ENSAPEG00000016105	polr1a	98	73.050	ENSTTRG00000008597	POLR1A	94	73.050	Tursiops_truncatus
ENSAPEG00000016105	polr1a	73	67.091	ENSUAMG00000012158	-	94	67.458	Ursus_americanus
ENSAPEG00000016105	polr1a	97	71.528	ENSUMAG00000006700	POLR1A	100	66.022	Ursus_maritimus
ENSAPEG00000016105	polr1a	98	73.611	ENSVVUG00000001245	POLR1A	95	73.611	Vulpes_vulpes
ENSAPEG00000016105	polr1a	98	70.345	ENSXETG00000001952	polr1a	94	70.345	Xenopus_tropicalis
ENSAPEG00000016105	polr1a	100	83.138	ENSXMAG00000004032	polr1a	100	82.787	Xiphophorus_maculatus