EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPEG00000016108 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Minus strand
Length: 49259 bases
Position: chr24:11839876-11889134
Accession: ZDB-GENE-030131-7119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000022623	R3H	PF01424.22	2.2e-12	1	1
ENSAPEP00000022599	R3H	PF01424.22	2.5e-12	1	1
ENSAPEP00000022651	R3H	PF01424.22	2.5e-12	1	1
ENSAPEP00000022667	R3H	PF01424.22	2.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000023198	-	5232	-	ENSAPEP00000022599	1008 (aa)	-	-
ENSAPET00000023250	-	4719	-	ENSAPEP00000022651	1008 (aa)	-	-
ENSAPET00000023266	-	4661	-	ENSAPEP00000022667	1008 (aa)	-	-
ENSAPET00000023222	-	5106	-	ENSAPEP00000022623	966 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000016108's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000016108's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPEG00000016108	r3hdm1	78	61.111	ENSAPEG00000008851	r3hdm2	87	49.258

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000016108	r3hdm1	95	63.200	ENSG00000048991	R3HDM1	97	59.574	Homo_sapiens
ENSAPEG00000016108	r3hdm1	100	96.928	ENSAPOG00000020850	r3hdm1	96	96.928	Acanthochromis_polyacanthus
ENSAPEG00000016108	r3hdm1	99	46.770	ENSAMEG00000014886	R3HDM1	89	46.629	Ailuropoda_melanoleuca
ENSAPEG00000016108	r3hdm1	100	95.211	ENSAOCG00000005192	r3hdm1	100	95.211	Amphiprion_ocellaris
ENSAPEG00000016108	r3hdm1	100	88.241	ENSATEG00000000232	r3hdm1	100	88.241	Anabas_testudineus
ENSAPEG00000016108	r3hdm1	99	45.920	ENSAPLG00000015231	R3HDM1	89	45.977	Anas_platyrhynchos
ENSAPEG00000016108	r3hdm1	99	46.771	ENSACAG00000001676	R3HDM1	89	46.771	Anolis_carolinensis
ENSAPEG00000016108	r3hdm1	95	63.467	ENSANAG00000035334	R3HDM1	87	63.467	Aotus_nancymaae
ENSAPEG00000016108	r3hdm1	100	88.454	ENSACLG00000027282	r3hdm1	100	88.144	Astatotilapia_calliptera
ENSAPEG00000016108	r3hdm1	84	72.115	ENSAMXG00000003536	r3hdm1	77	73.841	Astyanax_mexicanus
ENSAPEG00000016108	r3hdm1	100	53.134	ENSAMXG00000012861	R3HDM1	89	59.080	Astyanax_mexicanus
ENSAPEG00000016108	r3hdm1	99	47.677	ENSBTAG00000013302	R3HDM1	89	46.642	Bos_taurus
ENSAPEG00000016108	r3hdm1	95	63.200	ENSCJAG00000011718	R3HDM1	87	63.200	Callithrix_jacchus
ENSAPEG00000016108	r3hdm1	99	46.770	ENSCAFG00000005075	R3HDM1	89	46.547	Canis_familiaris
ENSAPEG00000016108	r3hdm1	99	46.770	ENSCAFG00020016119	R3HDM1	99	54.107	Canis_lupus_dingo
ENSAPEG00000016108	r3hdm1	99	46.704	ENSCHIG00000020851	R3HDM1	89	46.679	Capra_hircus
ENSAPEG00000016108	r3hdm1	99	46.011	ENSCPOG00000012784	R3HDM1	100	59.206	Cavia_porcellus
ENSAPEG00000016108	r3hdm1	95	62.667	ENSCCAG00000027199	R3HDM1	87	62.667	Cebus_capucinus
ENSAPEG00000016108	r3hdm1	95	62.933	ENSCATG00000023642	R3HDM1	87	62.933	Cercocebus_atys
ENSAPEG00000016108	r3hdm1	99	46.204	ENSCLAG00000007962	R3HDM1	100	59.044	Chinchilla_lanigera
ENSAPEG00000016108	r3hdm1	99	45.968	ENSCSAG00000016356	R3HDM1	89	46.020	Chlorocebus_sabaeus
ENSAPEG00000016108	r3hdm1	80	66.142	ENSCHOG00000013638	R3HDM1	68	66.142	Choloepus_hoffmanni
ENSAPEG00000016108	r3hdm1	82	70.144	ENSCPBG00000009645	R3HDM1	86	70.144	Chrysemys_picta_bellii
ENSAPEG00000016108	r3hdm1	95	62.933	ENSCANG00000034748	R3HDM1	87	62.933	Colobus_angolensis_palliatus
ENSAPEG00000016108	r3hdm1	99	45.775	ENSCGRG00001012357	R3hdm1	86	45.929	Cricetulus_griseus_chok1gshd
ENSAPEG00000016108	r3hdm1	99	45.797	ENSCGRG00000012080	R3hdm1	100	59.727	Cricetulus_griseus_crigri
ENSAPEG00000016108	r3hdm1	100	71.442	ENSCSEG00000008944	r3hdm1	100	72.719	Cynoglossus_semilaevis
ENSAPEG00000016108	r3hdm1	100	82.115	ENSCVAG00000007582	r3hdm1	100	81.719	Cyprinodon_variegatus
ENSAPEG00000016108	r3hdm1	99	45.376	ENSDNOG00000000771	R3HDM1	89	45.411	Dasypus_novemcinctus
ENSAPEG00000016108	r3hdm1	99	42.857	ENSETEG00000013606	R3HDM1	86	54.455	Echinops_telfairi
ENSAPEG00000016108	r3hdm1	95	56.325	ENSEASG00005007392	R3HDM1	88	56.325	Equus_asinus_asinus
ENSAPEG00000016108	r3hdm1	95	56.325	ENSECAG00000019114	R3HDM1	88	56.325	Equus_caballus
ENSAPEG00000016108	r3hdm1	90	52.915	ENSELUG00000014413	r3hdm1	83	53.363	Esox_lucius
ENSAPEG00000016108	r3hdm1	94	52.024	ENSELUG00000004909	R3HDM1	82	52.282	Esox_lucius
ENSAPEG00000016108	r3hdm1	95	56.325	ENSFCAG00000027113	R3HDM1	88	56.325	Felis_catus
ENSAPEG00000016108	r3hdm1	83	48.013	ENSFALG00000013731	R3HDM1	90	43.471	Ficedula_albicollis
ENSAPEG00000016108	r3hdm1	99	46.061	ENSFDAG00000016478	R3HDM1	100	59.727	Fukomys_damarensis
ENSAPEG00000016108	r3hdm1	100	80.019	ENSFHEG00000018713	r3hdm1	100	79.924	Fundulus_heteroclitus
ENSAPEG00000016108	r3hdm1	66	63.579	ENSGMOG00000006042	-	79	56.552	Gadus_morhua
ENSAPEG00000016108	r3hdm1	91	61.333	ENSGALG00000012246	R3HDM1	84	65.132	Gallus_gallus
ENSAPEG00000016108	r3hdm1	100	81.276	ENSGAFG00000006203	r3hdm1	100	81.379	Gambusia_affinis
ENSAPEG00000016108	r3hdm1	95	81.940	ENSGACG00000014925	r3hdm1	92	81.321	Gasterosteus_aculeatus
ENSAPEG00000016108	r3hdm1	87	64.907	ENSGAGG00000007840	R3HDM1	76	64.907	Gopherus_agassizii
ENSAPEG00000016108	r3hdm1	95	63.200	ENSGGOG00000008156	R3HDM1	87	63.200	Gorilla_gorilla
ENSAPEG00000016108	r3hdm1	53	82.310	ENSHBUG00000015737	R3HDM1	99	82.459	Haplochromis_burtoni
ENSAPEG00000016108	r3hdm1	99	46.438	ENSHGLG00000015718	R3HDM1	100	59.386	Heterocephalus_glaber_female
ENSAPEG00000016108	r3hdm1	99	46.346	ENSHGLG00100003184	-	100	59.727	Heterocephalus_glaber_male
ENSAPEG00000016108	r3hdm1	99	40.609	ENSHGLG00100015374	-	91	40.584	Heterocephalus_glaber_male
ENSAPEG00000016108	r3hdm1	100	71.104	ENSHCOG00000013366	r3hdm1	100	70.691	Hippocampus_comes
ENSAPEG00000016108	r3hdm1	55	53.723	ENSIPUG00000020552	arpp21	69	53.968	Ictalurus_punctatus
ENSAPEG00000016108	r3hdm1	91	62.264	ENSIPUG00000013629	r3hdm1	88	61.456	Ictalurus_punctatus
ENSAPEG00000016108	r3hdm1	86	71.519	ENSIPUG00000001676	R3HDM1	89	72.131	Ictalurus_punctatus
ENSAPEG00000016108	r3hdm1	99	46.988	ENSSTOG00000007572	R3HDM1	100	60.068	Ictidomys_tridecemlineatus
ENSAPEG00000016108	r3hdm1	98	57.619	ENSLACG00000005334	R3HDM1	89	56.905	Latimeria_chalumnae
ENSAPEG00000016108	r3hdm1	99	49.307	ENSLOCG00000001641	r3hdm1	90	49.954	Lepisosteus_oculatus
ENSAPEG00000016108	r3hdm1	86	68.371	ENSLAFG00000009065	R3HDM1	81	68.932	Loxodonta_africana
ENSAPEG00000016108	r3hdm1	95	63.200	ENSMFAG00000030331	R3HDM1	87	63.200	Macaca_fascicularis
ENSAPEG00000016108	r3hdm1	95	63.200	ENSMMUG00000009844	R3HDM1	87	63.200	Macaca_mulatta
ENSAPEG00000016108	r3hdm1	95	63.200	ENSMNEG00000027793	R3HDM1	87	63.200	Macaca_nemestrina
ENSAPEG00000016108	r3hdm1	95	63.200	ENSMLEG00000043189	R3HDM1	87	63.200	Mandrillus_leucophaeus
ENSAPEG00000016108	r3hdm1	100	87.364	ENSMAMG00000004532	r3hdm1	100	87.068	Mastacembelus_armatus
ENSAPEG00000016108	r3hdm1	100	88.067	ENSMZEG00005003157	r3hdm1	100	88.067	Maylandia_zebra
ENSAPEG00000016108	r3hdm1	96	46.841	ENSMGAG00000012461	R3HDM1	88	45.998	Meleagris_gallopavo
ENSAPEG00000016108	r3hdm1	99	46.438	ENSMAUG00000010315	R3hdm1	100	59.727	Mesocricetus_auratus
ENSAPEG00000016108	r3hdm1	95	62.933	ENSMICG00000005900	-	87	62.933	Microcebus_murinus
ENSAPEG00000016108	r3hdm1	95	62.667	ENSMICG00000042655	-	92	62.667	Microcebus_murinus
ENSAPEG00000016108	r3hdm1	99	45.126	ENSMODG00000000923	R3HDM1	96	45.185	Monodelphis_domestica
ENSAPEG00000016108	r3hdm1	100	83.973	ENSMALG00000009000	r3hdm1	90	83.685	Monopterus_albus
ENSAPEG00000016108	r3hdm1	99	45.564	MGP_CAROLIEiJ_G0014543	R3hdm1	100	64.490	Mus_caroli
ENSAPEG00000016108	r3hdm1	99	45.471	ENSMUSG00000056211	R3hdm1	100	64.490	Mus_musculus
ENSAPEG00000016108	r3hdm1	99	45.143	MGP_PahariEiJ_G0027779	R3hdm1	100	64.490	Mus_pahari
ENSAPEG00000016108	r3hdm1	99	45.471	MGP_SPRETEiJ_G0015350	R3hdm1	100	64.490	Mus_spretus
ENSAPEG00000016108	r3hdm1	99	46.866	ENSMPUG00000002412	R3HDM1	89	46.845	Mustela_putorius_furo
ENSAPEG00000016108	r3hdm1	99	46.667	ENSMLUG00000013824	R3HDM1	89	46.590	Myotis_lucifugus
ENSAPEG00000016108	r3hdm1	95	63.200	ENSNLEG00000008622	R3HDM1	87	63.200	Nomascus_leucogenys
ENSAPEG00000016108	r3hdm1	94	40.195	ENSMEUG00000011784	R3HDM1	93	40.552	Notamacropus_eugenii
ENSAPEG00000016108	r3hdm1	99	45.412	ENSODEG00000008607	R3HDM1	100	59.386	Octodon_degus
ENSAPEG00000016108	r3hdm1	95	86.218	ENSONIG00000012017	r3hdm1	85	85.897	Oreochromis_niloticus
ENSAPEG00000016108	r3hdm1	99	45.014	ENSOANG00000007987	R3HDM1	89	45.437	Ornithorhynchus_anatinus
ENSAPEG00000016108	r3hdm1	99	46.570	ENSOCUG00000017366	R3HDM1	97	46.923	Oryctolagus_cuniculus
ENSAPEG00000016108	r3hdm1	100	75.670	ENSORLG00000004297	r3hdm1	100	75.876	Oryzias_latipes
ENSAPEG00000016108	r3hdm1	100	75.437	ENSORLG00015017355	r3hdm1	100	74.131	Oryzias_latipes_hsok
ENSAPEG00000016108	r3hdm1	52	77.323	ENSOMEG00000003882	-	99	77.509	Oryzias_melastigma
ENSAPEG00000016108	r3hdm1	99	46.302	ENSOGAG00000003136	R3HDM1	89	46.884	Otolemur_garnettii
ENSAPEG00000016108	r3hdm1	99	46.570	ENSOARG00000010788	R3HDM1	89	46.449	Ovis_aries
ENSAPEG00000016108	r3hdm1	95	63.200	ENSPPAG00000027858	R3HDM1	87	63.200	Pan_paniscus
ENSAPEG00000016108	r3hdm1	95	62.667	ENSPPRG00000002626	R3HDM1	87	62.667	Panthera_pardus
ENSAPEG00000016108	r3hdm1	95	62.933	ENSPTIG00000016581	R3HDM1	87	62.933	Panthera_tigris_altaica
ENSAPEG00000016108	r3hdm1	95	63.200	ENSPTRG00000012494	R3HDM1	87	63.200	Pan_troglodytes
ENSAPEG00000016108	r3hdm1	95	63.200	ENSPANG00000026448	R3HDM1	87	63.200	Papio_anubis
ENSAPEG00000016108	r3hdm1	88	73.597	ENSPKIG00000004328	r3hdm1	83	64.607	Paramormyrops_kingsleyae
ENSAPEG00000016108	r3hdm1	99	45.865	ENSPSIG00000012915	R3HDM1	88	46.596	Pelodiscus_sinensis
ENSAPEG00000016108	r3hdm1	99	45.564	ENSPEMG00000015187	R3hdm1	100	59.727	Peromyscus_maniculatus_bairdii
ENSAPEG00000016108	r3hdm1	94	39.012	ENSPMAG00000003369	-	90	39.841	Petromyzon_marinus
ENSAPEG00000016108	r3hdm1	95	55.107	ENSPCIG00000002491	R3HDM1	88	55.107	Phascolarctos_cinereus
ENSAPEG00000016108	r3hdm1	100	78.843	ENSPFOG00000015036	r3hdm1	100	78.748	Poecilia_formosa
ENSAPEG00000016108	r3hdm1	100	81.352	ENSPLAG00000018042	r3hdm1	100	81.250	Poecilia_latipinna
ENSAPEG00000016108	r3hdm1	100	80.943	ENSPMEG00000023947	r3hdm1	100	80.943	Poecilia_mexicana
ENSAPEG00000016108	r3hdm1	100	81.460	ENSPREG00000007902	r3hdm1	100	81.558	Poecilia_reticulata
ENSAPEG00000016108	r3hdm1	99	45.236	ENSPPYG00000012815	R3HDM1	89	45.627	Pongo_abelii
ENSAPEG00000016108	r3hdm1	86	54.030	ENSPCAG00000006208	R3HDM1	77	54.762	Procavia_capensis
ENSAPEG00000016108	r3hdm1	95	59.677	ENSPCOG00000012698	R3HDM1	87	59.677	Propithecus_coquereli
ENSAPEG00000016108	r3hdm1	99	41.522	ENSPVAG00000006098	R3HDM1	89	40.931	Pteropus_vampyrus
ENSAPEG00000016108	r3hdm1	86	72.848	ENSPNAG00000005436	R3HDM1	87	71.854	Pygocentrus_nattereri
ENSAPEG00000016108	r3hdm1	83	73.841	ENSPNAG00000013952	r3hdm1	77	73.841	Pygocentrus_nattereri
ENSAPEG00000016108	r3hdm1	99	45.598	ENSRNOG00000004099	R3hdm1	89	45.746	Rattus_norvegicus
ENSAPEG00000016108	r3hdm1	85	71.942	ENSRBIG00000033317	R3HDM1	86	71.942	Rhinopithecus_bieti
ENSAPEG00000016108	r3hdm1	95	63.200	ENSRROG00000034534	R3HDM1	87	63.200	Rhinopithecus_roxellana
ENSAPEG00000016108	r3hdm1	95	62.933	ENSSBOG00000020389	R3HDM1	87	62.933	Saimiri_boliviensis_boliviensis
ENSAPEG00000016108	r3hdm1	99	48.096	ENSSHAG00000016999	R3HDM1	88	47.952	Sarcophilus_harrisii
ENSAPEG00000016108	r3hdm1	100	48.183	ENSSFOG00015019851	-	94	56.530	Scleropages_formosus
ENSAPEG00000016108	r3hdm1	85	74.751	ENSSFOG00015014134	r3hdm1	78	73.754	Scleropages_formosus
ENSAPEG00000016108	r3hdm1	100	83.976	ENSSMAG00000001669	r3hdm1	90	83.976	Scophthalmus_maximus
ENSAPEG00000016108	r3hdm1	100	88.277	ENSSDUG00000010749	r3hdm1	100	88.583	Seriola_dumerili
ENSAPEG00000016108	r3hdm1	100	85.743	ENSSLDG00000004499	r3hdm1	90	85.743	Seriola_lalandi_dorsalis
ENSAPEG00000016108	r3hdm1	55	46.906	ENSSARG00000000352	-	52	46.906	Sorex_araneus
ENSAPEG00000016108	r3hdm1	99	45.665	ENSSPUG00000004167	R3HDM1	88	46.398	Sphenodon_punctatus
ENSAPEG00000016108	r3hdm1	100	94.969	ENSSPAG00000004648	r3hdm1	100	94.969	Stegastes_partitus
ENSAPEG00000016108	r3hdm1	95	60.215	ENSSSCG00000015692	R3HDM1	87	60.215	Sus_scrofa
ENSAPEG00000016108	r3hdm1	96	46.707	ENSTGUG00000011750	R3HDM1	89	45.821	Taeniopygia_guttata
ENSAPEG00000016108	r3hdm1	100	78.803	ENSTRUG00000011654	r3hdm1	99	78.405	Takifugu_rubripes
ENSAPEG00000016108	r3hdm1	98	70.430	ENSTNIG00000010362	r3hdm1	99	70.729	Tetraodon_nigroviridis
ENSAPEG00000016108	r3hdm1	82	54.598	ENSTTRG00000003935	R3HDM1	80	47.583	Tursiops_truncatus
ENSAPEG00000016108	r3hdm1	74	63.733	ENSUAMG00000024806	R3HDM1	93	62.933	Ursus_americanus
ENSAPEG00000016108	r3hdm1	95	63.733	ENSUMAG00000005552	R3HDM1	87	62.933	Ursus_maritimus
ENSAPEG00000016108	r3hdm1	87	49.364	ENSVPAG00000007333	R3HDM1	74	49.255	Vicugna_pacos
ENSAPEG00000016108	r3hdm1	95	62.933	ENSVVUG00000006457	R3HDM1	88	62.933	Vulpes_vulpes
ENSAPEG00000016108	r3hdm1	94	45.636	ENSXETG00000019330	r3hdm1	88	46.702	Xenopus_tropicalis
ENSAPEG00000016108	r3hdm1	77	77.147	ENSXCOG00000017448	r3hdm1	93	77.279	Xiphophorus_couchianus
ENSAPEG00000016108	r3hdm1	100	80.864	ENSXMAG00000007885	r3hdm1	100	78.476	Xiphophorus_maculatus