EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPEG00000016344 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Plus strand
Length: 14385 bases
Position: chr10:25671954-25686338
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000023079	UPF1_Zn_bind	PF09416.10	1.9e-75	1	1
ENSAPEP00000023048	UPF1_Zn_bind	PF09416.10	2e-75	1	1
ENSAPEP00000023079	ResIII	PF04851.15	2.4e-05	1	1
ENSAPEP00000023048	ResIII	PF04851.15	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000023658	-	6449	-	ENSAPEP00000023048	1113 (aa)	-	UPI000C31559A
ENSAPET00000023690	-	3258	-	ENSAPEP00000023079	1085 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000016344's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000016344's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPEG00000016344	upf1	100	93.190	ENSAPEG00000006292	-	100	92.916

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000016344	upf1	100	91.278	ENSG00000005007	UPF1	100	90.706	Homo_sapiens
ENSAPEG00000016344	upf1	100	99.910	ENSAPOG00000023773	upf1	100	99.910	Acanthochromis_polyacanthus
ENSAPEG00000016344	upf1	100	93.280	ENSAPOG00000010916	-	100	92.825	Acanthochromis_polyacanthus
ENSAPEG00000016344	upf1	100	90.798	ENSAMEG00000011474	UPF1	100	90.222	Ailuropoda_melanoleuca
ENSAPEG00000016344	upf1	94	92.891	ENSACIG00000010985	-	100	92.480	Amphilophus_citrinellus
ENSAPEG00000016344	upf1	100	97.574	ENSACIG00000019949	upf1	100	97.574	Amphilophus_citrinellus
ENSAPEG00000016344	upf1	100	100.000	ENSAOCG00000018519	upf1	100	100.000	Amphiprion_ocellaris
ENSAPEG00000016344	upf1	100	93.280	ENSAOCG00000006352	-	100	92.825	Amphiprion_ocellaris
ENSAPEG00000016344	upf1	100	98.029	ENSATEG00000017867	upf1	100	98.029	Anabas_testudineus
ENSAPEG00000016344	upf1	100	93.280	ENSATEG00000016606	-	100	92.825	Anabas_testudineus
ENSAPEG00000016344	upf1	95	92.897	ENSAPLG00000009175	UPF1	100	92.220	Anas_platyrhynchos
ENSAPEG00000016344	upf1	95	91.190	ENSANAG00000024107	UPF1	95	90.485	Aotus_nancymaae
ENSAPEG00000016344	upf1	100	97.484	ENSACLG00000007181	upf1	100	97.484	Astatotilapia_calliptera
ENSAPEG00000016344	upf1	100	92.921	ENSACLG00000022630	-	100	92.643	Astatotilapia_calliptera
ENSAPEG00000016344	upf1	100	93.986	ENSAMXG00000042187	upf1	100	93.909	Astyanax_mexicanus
ENSAPEG00000016344	upf1	100	90.814	ENSBTAG00000020922	UPF1	100	90.240	Bos_taurus
ENSAPEG00000016344	upf1	82	54.018	WBGene00004880	smg-2	83	54.353	Caenorhabditis_elegans
ENSAPEG00000016344	upf1	100	90.401	ENSCJAG00000019627	UPF1	100	89.823	Callithrix_jacchus
ENSAPEG00000016344	upf1	100	90.576	ENSCAFG00000014578	UPF1	100	90.000	Canis_familiaris
ENSAPEG00000016344	upf1	100	91.454	ENSCAFG00020012347	UPF1	100	90.885	Canis_lupus_dingo
ENSAPEG00000016344	upf1	100	91.696	ENSCHIG00000011018	UPF1	100	91.129	Capra_hircus
ENSAPEG00000016344	upf1	95	92.596	ENSTSYG00000008877	UPF1	98	91.912	Carlito_syrichta
ENSAPEG00000016344	upf1	96	91.752	ENSCAPG00000005758	UPF1	95	91.722	Cavia_aperea
ENSAPEG00000016344	upf1	100	91.571	ENSCPOG00000025463	UPF1	100	90.909	Cavia_porcellus
ENSAPEG00000016344	upf1	100	91.278	ENSCCAG00000032175	UPF1	100	90.706	Cebus_capucinus
ENSAPEG00000016344	upf1	94	92.568	ENSCATG00000040306	UPF1	98	91.722	Cercocebus_atys
ENSAPEG00000016344	upf1	95	92.502	ENSCLAG00000004037	UPF1	99	91.912	Chinchilla_lanigera
ENSAPEG00000016344	upf1	100	91.278	ENSCSAG00000005276	UPF1	100	90.706	Chlorocebus_sabaeus
ENSAPEG00000016344	upf1	100	91.851	ENSCPBG00000012513	UPF1	100	91.195	Chrysemys_picta_bellii
ENSAPEG00000016344	upf1	78	78.873	ENSCING00000021399	-	99	79.577	Ciona_intestinalis
ENSAPEG00000016344	upf1	99	72.579	ENSCSAVG00000006533	-	99	72.760	Ciona_savignyi
ENSAPEG00000016344	upf1	95	92.502	ENSCANG00000029819	UPF1	97	91.817	Colobus_angolensis_palliatus
ENSAPEG00000016344	upf1	100	91.416	ENSCGRG00001021067	Upf1	100	90.934	Cricetulus_griseus_chok1gshd
ENSAPEG00000016344	upf1	95	92.221	ENSCGRG00000013480	Upf1	98	91.627	Cricetulus_griseus_crigri
ENSAPEG00000016344	upf1	100	90.817	ENSCSEG00000017239	upf1	100	90.634	Cynoglossus_semilaevis
ENSAPEG00000016344	upf1	100	93.543	ENSCSEG00000016159	-	100	92.805	Cynoglossus_semilaevis
ENSAPEG00000016344	upf1	100	92.473	ENSCVAG00000010561	upf1	100	92.189	Cyprinodon_variegatus
ENSAPEG00000016344	upf1	100	93.896	ENSDARG00000016302	upf1	100	94.075	Danio_rerio
ENSAPEG00000016344	upf1	95	90.075	ENSDORG00000009984	Upf1	95	89.449	Dipodomys_ordii
ENSAPEG00000016344	upf1	85	71.505	FBgn0030354	Upf1	82	70.872	Drosophila_melanogaster
ENSAPEG00000016344	upf1	55	87.086	ENSEBUG00000010069	upf1	96	87.417	Eptatretus_burgeri
ENSAPEG00000016344	upf1	100	91.696	ENSEASG00005006549	UPF1	100	91.129	Equus_asinus_asinus
ENSAPEG00000016344	upf1	100	91.696	ENSECAG00000010639	UPF1	100	91.129	Equus_caballus
ENSAPEG00000016344	upf1	100	94.434	ENSELUG00000020917	upf1	100	93.268	Esox_lucius
ENSAPEG00000016344	upf1	100	92.589	ENSELUG00000012916	-	100	91.964	Esox_lucius
ENSAPEG00000016344	upf1	100	90.576	ENSFCAG00000009757	UPF1	100	90.000	Felis_catus
ENSAPEG00000016344	upf1	95	93.415	ENSFALG00000009312	UPF1	96	92.741	Ficedula_albicollis
ENSAPEG00000016344	upf1	95	92.409	ENSFDAG00000014816	UPF1	99	91.817	Fukomys_damarensis
ENSAPEG00000016344	upf1	87	94.763	ENSFHEG00000016276	-	96	94.763	Fundulus_heteroclitus
ENSAPEG00000016344	upf1	100	93.744	ENSFHEG00000006428	upf1	100	93.119	Fundulus_heteroclitus
ENSAPEG00000016344	upf1	100	91.223	ENSGMOG00000007541	upf1	100	91.516	Gadus_morhua
ENSAPEG00000016344	upf1	100	91.615	ENSGALG00000003220	UPF1	100	90.868	Gallus_gallus
ENSAPEG00000016344	upf1	100	92.616	ENSGAFG00000004831	upf1	100	92.616	Gambusia_affinis
ENSAPEG00000016344	upf1	64	95.533	ENSGAFG00000015443	-	85	96.686	Gambusia_affinis
ENSAPEG00000016344	upf1	100	92.260	ENSGAGG00000022217	UPF1	100	91.726	Gopherus_agassizii
ENSAPEG00000016344	upf1	95	93.466	ENSGGOG00000002608	UPF1	99	92.788	Gorilla_gorilla
ENSAPEG00000016344	upf1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSAPEG00000016344	upf1	90	97.436	ENSHBUG00000014694	upf1	100	97.436	Haplochromis_burtoni
ENSAPEG00000016344	upf1	100	90.227	ENSHGLG00000010900	UPF1	100	89.735	Heterocephalus_glaber_female
ENSAPEG00000016344	upf1	95	90.628	ENSHGLG00100005904	UPF1	96	90.010	Heterocephalus_glaber_male
ENSAPEG00000016344	upf1	100	92.480	ENSHCOG00000008918	upf1	100	92.384	Hippocampus_comes
ENSAPEG00000016344	upf1	100	94.165	ENSIPUG00000005108	UPF1	100	94.000	Ictalurus_punctatus
ENSAPEG00000016344	upf1	100	91.189	ENSSTOG00000009196	UPF1	100	90.706	Ictidomys_tridecemlineatus
ENSAPEG00000016344	upf1	100	90.694	ENSJJAG00000023151	Upf1	100	90.205	Jaculus_jaculus
ENSAPEG00000016344	upf1	100	92.832	ENSKMAG00000004962	upf1	100	92.371	Kryptolebias_marmoratus
ENSAPEG00000016344	upf1	100	93.017	ENSLBEG00000027848	-	100	92.559	Labrus_bergylta
ENSAPEG00000016344	upf1	100	98.023	ENSLBEG00000014862	upf1	100	98.023	Labrus_bergylta
ENSAPEG00000016344	upf1	64	92.997	ENSLACG00000008482	UPF1	100	91.392	Latimeria_chalumnae
ENSAPEG00000016344	upf1	100	93.812	ENSLOCG00000002072	upf1	100	93.455	Lepisosteus_oculatus
ENSAPEG00000016344	upf1	100	90.297	ENSLAFG00000014963	UPF1	100	89.982	Loxodonta_africana
ENSAPEG00000016344	upf1	100	91.037	ENSMFAG00000037748	UPF1	100	90.463	Macaca_fascicularis
ENSAPEG00000016344	upf1	100	90.798	ENSMMUG00000023286	UPF1	100	90.222	Macaca_mulatta
ENSAPEG00000016344	upf1	100	91.037	ENSMNEG00000000046	UPF1	100	90.463	Macaca_nemestrina
ENSAPEG00000016344	upf1	95	92.502	ENSMLEG00000028404	UPF1	99	91.817	Mandrillus_leucophaeus
ENSAPEG00000016344	upf1	100	98.387	ENSMAMG00000006229	upf1	100	98.387	Mastacembelus_armatus
ENSAPEG00000016344	upf1	100	92.927	ENSMAMG00000006231	-	100	92.559	Mastacembelus_armatus
ENSAPEG00000016344	upf1	100	92.921	ENSMZEG00005016386	-	100	92.643	Maylandia_zebra
ENSAPEG00000016344	upf1	100	98.562	ENSMZEG00005003489	upf1	100	98.562	Maylandia_zebra
ENSAPEG00000016344	upf1	95	92.416	ENSMGAG00000004745	UPF1	100	91.730	Meleagris_gallopavo
ENSAPEG00000016344	upf1	95	92.221	ENSMAUG00000011398	Upf1	95	91.627	Mesocricetus_auratus
ENSAPEG00000016344	upf1	100	91.366	ENSMICG00000001659	UPF1	100	90.795	Microcebus_murinus
ENSAPEG00000016344	upf1	100	90.535	ENSMOCG00000005699	Upf1	100	90.133	Microtus_ochrogaster
ENSAPEG00000016344	upf1	100	96.047	ENSMMOG00000007881	upf1	100	96.047	Mola_mola
ENSAPEG00000016344	upf1	95	90.472	ENSMMOG00000007537	-	99	89.952	Mola_mola
ENSAPEG00000016344	upf1	100	90.513	ENSMODG00000003689	UPF1	100	90.026	Monodelphis_domestica
ENSAPEG00000016344	upf1	100	91.875	ENSMALG00000018100	-	100	91.403	Monopterus_albus
ENSAPEG00000016344	upf1	100	96.964	ENSMALG00000000144	upf1	100	96.964	Monopterus_albus
ENSAPEG00000016344	upf1	100	91.327	MGP_CAROLIEiJ_G0031142	Upf1	100	90.844	Mus_caroli
ENSAPEG00000016344	upf1	100	91.327	ENSMUSG00000058301	Upf1	100	90.844	Mus_musculus
ENSAPEG00000016344	upf1	100	91.327	MGP_PahariEiJ_G0021607	Upf1	100	90.844	Mus_pahari
ENSAPEG00000016344	upf1	100	91.327	MGP_SPRETEiJ_G0032260	Upf1	100	90.844	Mus_spretus
ENSAPEG00000016344	upf1	100	91.454	ENSMPUG00000015516	UPF1	100	90.885	Mustela_putorius_furo
ENSAPEG00000016344	upf1	99	91.335	ENSMLUG00000012122	UPF1	99	90.762	Myotis_lucifugus
ENSAPEG00000016344	upf1	100	90.122	ENSNGAG00000024107	Upf1	100	89.628	Nannospalax_galili
ENSAPEG00000016344	upf1	100	95.418	ENSNBRG00000000670	upf1	100	95.418	Neolamprologus_brichardi
ENSAPEG00000016344	upf1	100	89.542	ENSNBRG00000022069	-	100	91.642	Neolamprologus_brichardi
ENSAPEG00000016344	upf1	95	86.879	ENSNLEG00000006062	UPF1	99	86.108	Nomascus_leucogenys
ENSAPEG00000016344	upf1	83	86.882	ENSMEUG00000014146	-	83	85.294	Notamacropus_eugenii
ENSAPEG00000016344	upf1	95	86.837	ENSOPRG00000014018	UPF1	99	85.864	Ochotona_princeps
ENSAPEG00000016344	upf1	100	91.474	ENSODEG00000012426	UPF1	100	90.901	Octodon_degus
ENSAPEG00000016344	upf1	100	98.832	ENSONIG00000010452	upf1	100	98.832	Oreochromis_niloticus
ENSAPEG00000016344	upf1	100	92.921	ENSONIG00000012729	-	100	92.643	Oreochromis_niloticus
ENSAPEG00000016344	upf1	100	90.559	ENSOANG00000004568	UPF1	100	89.973	Ornithorhynchus_anatinus
ENSAPEG00000016344	upf1	100	92.832	ENSORLG00000008453	upf1	100	91.916	Oryzias_latipes
ENSAPEG00000016344	upf1	100	92.748	ENSORLG00020014758	upf1	100	91.833	Oryzias_latipes_hni
ENSAPEG00000016344	upf1	100	92.748	ENSORLG00015010165	upf1	100	91.833	Oryzias_latipes_hsok
ENSAPEG00000016344	upf1	100	93.190	ENSOMEG00000003665	upf1	100	92.189	Oryzias_melastigma
ENSAPEG00000016344	upf1	100	91.366	ENSOGAG00000012866	UPF1	100	90.795	Otolemur_garnettii
ENSAPEG00000016344	upf1	96	89.655	ENSOARG00000010739	UPF1	100	88.950	Ovis_aries
ENSAPEG00000016344	upf1	95	92.502	ENSPPAG00000043884	UPF1	96	91.817	Pan_paniscus
ENSAPEG00000016344	upf1	100	90.576	ENSPPRG00000023470	UPF1	100	90.000	Panthera_pardus
ENSAPEG00000016344	upf1	95	91.493	ENSPTIG00000010159	UPF1	99	90.787	Panthera_tigris_altaica
ENSAPEG00000016344	upf1	100	91.037	ENSPTRG00000010721	UPF1	100	90.463	Pan_troglodytes
ENSAPEG00000016344	upf1	100	91.037	ENSPANG00000008847	UPF1	100	90.463	Papio_anubis
ENSAPEG00000016344	upf1	92	95.491	ENSPKIG00000006069	upf1	97	95.545	Paramormyrops_kingsleyae
ENSAPEG00000016344	upf1	70	91.805	ENSPSIG00000009491	UPF1	100	90.850	Pelodiscus_sinensis
ENSAPEG00000016344	upf1	100	92.563	ENSPMGG00000017327	upf1	100	92.832	Periophthalmus_magnuspinnatus
ENSAPEG00000016344	upf1	100	90.535	ENSPEMG00000001085	Upf1	100	90.044	Peromyscus_maniculatus_bairdii
ENSAPEG00000016344	upf1	100	86.910	ENSPMAG00000001206	upf1	100	86.438	Petromyzon_marinus
ENSAPEG00000016344	upf1	100	91.887	ENSPCIG00000006156	UPF1	100	91.324	Phascolarctos_cinereus
ENSAPEG00000016344	upf1	100	95.238	ENSPLAG00000018155	-	100	95.238	Poecilia_latipinna
ENSAPEG00000016344	upf1	100	92.616	ENSPLAG00000016232	-	100	92.707	Poecilia_latipinna
ENSAPEG00000016344	upf1	100	92.532	ENSPMEG00000016319	-	100	92.623	Poecilia_mexicana
ENSAPEG00000016344	upf1	100	94.879	ENSPMEG00000011443	-	100	94.247	Poecilia_mexicana
ENSAPEG00000016344	upf1	100	94.978	ENSPREG00000009940	upf1	100	94.978	Poecilia_reticulata
ENSAPEG00000016344	upf1	100	92.434	ENSPREG00000011247	-	100	92.525	Poecilia_reticulata
ENSAPEG00000016344	upf1	100	85.340	ENSPPYG00000009752	UPF1	100	85.195	Pongo_abelii
ENSAPEG00000016344	upf1	76	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSAPEG00000016344	upf1	100	91.053	ENSPCOG00000023813	UPF1	100	90.480	Propithecus_coquereli
ENSAPEG00000016344	upf1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSAPEG00000016344	upf1	100	98.562	ENSPNYG00000003694	upf1	100	98.562	Pundamilia_nyererei
ENSAPEG00000016344	upf1	100	92.921	ENSPNYG00000016731	-	100	92.643	Pundamilia_nyererei
ENSAPEG00000016344	upf1	100	94.075	ENSPNAG00000025614	upf1	100	94.000	Pygocentrus_nattereri
ENSAPEG00000016344	upf1	100	91.327	ENSRNOG00000020134	Upf1	100	90.844	Rattus_norvegicus
ENSAPEG00000016344	upf1	95	90.159	ENSRBIG00000013894	UPF1	98	92.552	Rhinopithecus_bieti
ENSAPEG00000016344	upf1	95	92.502	ENSRROG00000040935	UPF1	98	92.552	Rhinopithecus_roxellana
ENSAPEG00000016344	upf1	73	56.716	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSAPEG00000016344	upf1	95	92.257	ENSSBOG00000023632	UPF1	96	91.572	Saimiri_boliviensis_boliviensis
ENSAPEG00000016344	upf1	95	92.797	ENSSHAG00000010499	UPF1	100	92.118	Sarcophilus_harrisii
ENSAPEG00000016344	upf1	100	93.638	ENSSFOG00015021095	upf1	100	93.460	Scleropages_formosus
ENSAPEG00000016344	upf1	100	97.038	ENSSMAG00000005055	upf1	100	97.038	Scophthalmus_maximus
ENSAPEG00000016344	upf1	100	93.017	ENSSMAG00000021018	-	100	92.559	Scophthalmus_maximus
ENSAPEG00000016344	upf1	100	93.286	ENSSDUG00000009629	-	100	92.831	Seriola_dumerili
ENSAPEG00000016344	upf1	100	98.835	ENSSDUG00000013320	upf1	100	98.835	Seriola_dumerili
ENSAPEG00000016344	upf1	100	98.029	ENSSLDG00000020868	upf1	100	98.029	Seriola_lalandi_dorsalis
ENSAPEG00000016344	upf1	100	93.286	ENSSLDG00000006878	-	100	92.831	Seriola_lalandi_dorsalis
ENSAPEG00000016344	upf1	100	91.918	ENSSPUG00000010538	UPF1	100	91.351	Sphenodon_punctatus
ENSAPEG00000016344	upf1	100	95.328	ENSSPAG00000000003	upf1	100	95.328	Stegastes_partitus
ENSAPEG00000016344	upf1	100	93.280	ENSSPAG00000011521	-	100	92.818	Stegastes_partitus
ENSAPEG00000016344	upf1	100	91.608	ENSSSCG00000039301	UPF1	99	92.802	Sus_scrofa
ENSAPEG00000016344	upf1	83	86.032	ENSTGUG00000001057	UPF1	100	91.124	Taeniopygia_guttata
ENSAPEG00000016344	upf1	100	96.230	ENSTRUG00000000150	upf1	100	96.230	Takifugu_rubripes
ENSAPEG00000016344	upf1	100	92.025	ENSTRUG00000005131	-	100	91.811	Takifugu_rubripes
ENSAPEG00000016344	upf1	100	87.986	ENSTTRG00000011544	UPF1	100	87.276	Tursiops_truncatus
ENSAPEG00000016344	upf1	100	91.454	ENSUAMG00000007093	UPF1	100	90.885	Ursus_americanus
ENSAPEG00000016344	upf1	95	93.573	ENSUMAG00000006652	UPF1	99	93.154	Ursus_maritimus
ENSAPEG00000016344	upf1	100	91.454	ENSVVUG00000007797	UPF1	100	90.885	Vulpes_vulpes
ENSAPEG00000016344	upf1	100	78.957	ENSXETG00000013602	upf1	100	78.174	Xenopus_tropicalis
ENSAPEG00000016344	upf1	94	92.892	ENSXCOG00000005764	-	99	92.892	Xiphophorus_couchianus
ENSAPEG00000016344	upf1	97	94.857	ENSXCOG00000015275	-	96	94.857	Xiphophorus_couchianus
ENSAPEG00000016344	upf1	100	94.940	ENSXMAG00000001703	-	100	94.940	Xiphophorus_maculatus
ENSAPEG00000016344	upf1	100	92.623	ENSXMAG00000002540	-	100	92.623	Xiphophorus_maculatus