EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPEG00000016504 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Plus strand
Length: 4813 bases
Position: chr5:21836512-21841324
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000023223	SMN	PF06003.12	2e-112	1	1
ENSAPEP00000023246	SMN	PF06003.12	2.4e-111	1	1
ENSAPEP00000023240	SMN	PF06003.12	3.1e-104	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000023838	-	1989	-	ENSAPEP00000023223	283 (aa)	-	-
ENSAPET00000023861	-	1099	-	ENSAPEP00000023246	275 (aa)	-	-
ENSAPET00000023855	-	837	-	ENSAPEP00000023240	278 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000016504's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000016504's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000016504	smn1	94	52.878	ENSG00000205571	SMN2	92	52.060	Homo_sapiens
ENSAPEG00000016504	smn1	94	52.878	ENSG00000172062	SMN1	92	52.060	Homo_sapiens
ENSAPEG00000016504	smn1	100	96.113	ENSAPOG00000011324	smn1	100	96.113	Acanthochromis_polyacanthus
ENSAPEG00000016504	smn1	94	53.623	ENSAMEG00000003316	-	89	52.347	Ailuropoda_melanoleuca
ENSAPEG00000016504	smn1	93	78.707	ENSACIG00000019772	-	99	78.707	Amphilophus_citrinellus
ENSAPEG00000016504	smn1	62	77.647	ENSACIG00000007598	smn1	94	77.647	Amphilophus_citrinellus
ENSAPEG00000016504	smn1	100	98.921	ENSAOCG00000024444	smn1	100	98.921	Amphiprion_ocellaris
ENSAPEG00000016504	smn1	95	86.667	ENSATEG00000002182	smn1	82	84.815	Anabas_testudineus
ENSAPEG00000016504	smn1	71	50.746	ENSAPLG00000010912	-	96	46.429	Anas_platyrhynchos
ENSAPEG00000016504	smn1	98	52.632	ENSACAG00000010017	-	96	52.797	Anolis_carolinensis
ENSAPEG00000016504	smn1	94	50.534	ENSANAG00000032133	-	92	49.638	Aotus_nancymaae
ENSAPEG00000016504	smn1	99	81.250	ENSACLG00000007308	smn1	94	80.287	Astatotilapia_calliptera
ENSAPEG00000016504	smn1	100	63.732	ENSAMXG00000013884	smn1	100	65.263	Astyanax_mexicanus
ENSAPEG00000016504	smn1	94	52.158	ENSBTAG00000005743	SMN2	93	52.347	Bos_taurus
ENSAPEG00000016504	smn1	94	53.759	ENSCJAG00000016290	-	92	50.000	Callithrix_jacchus
ENSAPEG00000016504	smn1	94	51.971	ENSCAFG00000007812	SMN	93	51.986	Canis_familiaris
ENSAPEG00000016504	smn1	94	51.971	ENSCAFG00020019229	-	86	51.986	Canis_lupus_dingo
ENSAPEG00000016504	smn1	94	52.963	ENSCHIG00000015559	-	91	52.899	Capra_hircus
ENSAPEG00000016504	smn1	94	53.986	ENSTSYG00000012058	-	93	53.091	Carlito_syrichta
ENSAPEG00000016504	smn1	75	47.867	ENSCAPG00000011021	-	91	43.318	Cavia_aperea
ENSAPEG00000016504	smn1	94	52.347	ENSCPOG00000036973	-	92	51.389	Cavia_porcellus
ENSAPEG00000016504	smn1	94	51.773	ENSCPOG00000012328	-	93	50.853	Cavia_porcellus
ENSAPEG00000016504	smn1	94	54.152	ENSCCAG00000018127	-	91	50.373	Cebus_capucinus
ENSAPEG00000016504	smn1	94	52.878	ENSCATG00000037002	-	92	52.416	Cercocebus_atys
ENSAPEG00000016504	smn1	94	50.178	ENSCLAG00000000284	-	92	53.214	Chinchilla_lanigera
ENSAPEG00000016504	smn1	94	53.237	ENSCSAG00000015688	-	91	52.536	Chlorocebus_sabaeus
ENSAPEG00000016504	smn1	66	80.000	ENSCHOG00000007346	-	77	86.957	Choloepus_hoffmanni
ENSAPEG00000016504	smn1	96	50.173	ENSCPBG00000010968	-	97	49.811	Chrysemys_picta_bellii
ENSAPEG00000016504	smn1	94	53.623	ENSCANG00000038242	-	93	53.184	Colobus_angolensis_palliatus
ENSAPEG00000016504	smn1	97	50.000	ENSCANG00000033324	-	94	48.958	Colobus_angolensis_palliatus
ENSAPEG00000016504	smn1	94	41.481	ENSCGRG00001016998	-	91	39.852	Cricetulus_griseus_chok1gshd
ENSAPEG00000016504	smn1	94	53.091	ENSCGRG00001017959	-	93	51.852	Cricetulus_griseus_chok1gshd
ENSAPEG00000016504	smn1	94	53.091	ENSCGRG00000007698	Smn1	93	51.852	Cricetulus_griseus_crigri
ENSAPEG00000016504	smn1	98	66.783	ENSCSEG00000015227	smn1	100	67.133	Cynoglossus_semilaevis
ENSAPEG00000016504	smn1	100	81.404	ENSCVAG00000007498	smn1	100	80.986	Cyprinodon_variegatus
ENSAPEG00000016504	smn1	100	64.808	ENSDARG00000018494	smn1	100	65.505	Danio_rerio
ENSAPEG00000016504	smn1	85	48.760	ENSDNOG00000007283	-	97	47.521	Dasypus_novemcinctus
ENSAPEG00000016504	smn1	82	43.348	ENSDNOG00000045949	-	65	57.143	Dasypus_novemcinctus
ENSAPEG00000016504	smn1	94	43.478	ENSDORG00000007082	Smn1	90	44.528	Dipodomys_ordii
ENSAPEG00000016504	smn1	65	44.624	ENSETEG00000001406	-	87	46.667	Echinops_telfairi
ENSAPEG00000016504	smn1	96	39.932	ENSEBUG00000011902	smn1	96	37.755	Eptatretus_burgeri
ENSAPEG00000016504	smn1	91	47.104	ENSEASG00005018000	-	89	46.743	Equus_asinus_asinus
ENSAPEG00000016504	smn1	94	52.190	ENSECAG00000015215	-	93	51.625	Equus_caballus
ENSAPEG00000016504	smn1	91	51.724	ENSEEUG00000015777	-	100	50.385	Erinaceus_europaeus
ENSAPEG00000016504	smn1	100	68.310	ENSELUG00000018067	smn1	100	67.958	Esox_lucius
ENSAPEG00000016504	smn1	94	52.708	ENSFCAG00000028292	SMN	93	52.347	Felis_catus
ENSAPEG00000016504	smn1	97	53.455	ENSFALG00000012320	-	95	51.493	Ficedula_albicollis
ENSAPEG00000016504	smn1	94	49.286	ENSFDAG00000017683	-	92	49.320	Fukomys_damarensis
ENSAPEG00000016504	smn1	97	81.159	ENSFHEG00000018508	smn1	100	81.159	Fundulus_heteroclitus
ENSAPEG00000016504	smn1	100	67.491	ENSGMOG00000017279	smn1	98	65.724	Gadus_morhua
ENSAPEG00000016504	smn1	95	51.852	ENSGALG00000002430	SMN	97	49.606	Gallus_gallus
ENSAPEG00000016504	smn1	100	82.686	ENSGAFG00000009501	smn1	100	82.686	Gambusia_affinis
ENSAPEG00000016504	smn1	100	81.625	ENSGACG00000010584	smn1	97	79.859	Gasterosteus_aculeatus
ENSAPEG00000016504	smn1	96	51.799	ENSGAGG00000011374	-	95	50.534	Gopherus_agassizii
ENSAPEG00000016504	smn1	98	35.075	ENSGAGG00000013639	-	95	35.821	Gopherus_agassizii
ENSAPEG00000016504	smn1	55	61.392	ENSGGOG00000026704	-	85	56.111	Gorilla_gorilla
ENSAPEG00000016504	smn1	91	50.775	ENSGGOG00000003872	-	93	48.855	Gorilla_gorilla
ENSAPEG00000016504	smn1	100	83.392	ENSHBUG00000013987	smn1	100	83.039	Haplochromis_burtoni
ENSAPEG00000016504	smn1	94	48.913	ENSHGLG00000001905	-	94	48.789	Heterocephalus_glaber_female
ENSAPEG00000016504	smn1	94	51.825	ENSHGLG00000001018	-	92	53.047	Heterocephalus_glaber_female
ENSAPEG00000016504	smn1	92	47.744	ENSHGLG00100018676	-	96	48.763	Heterocephalus_glaber_male
ENSAPEG00000016504	smn1	94	51.825	ENSHGLG00100011252	-	92	53.047	Heterocephalus_glaber_male
ENSAPEG00000016504	smn1	94	76.226	ENSHCOG00000017136	smn1	89	76.226	Hippocampus_comes
ENSAPEG00000016504	smn1	100	65.854	ENSIPUG00000012580	smn1	89	65.854	Ictalurus_punctatus
ENSAPEG00000016504	smn1	91	52.830	ENSSTOG00000012288	-	93	52.222	Ictidomys_tridecemlineatus
ENSAPEG00000016504	smn1	51	51.748	ENSJJAG00000014853	-	91	45.989	Jaculus_jaculus
ENSAPEG00000016504	smn1	100	80.420	ENSKMAG00000007239	smn1	100	80.420	Kryptolebias_marmoratus
ENSAPEG00000016504	smn1	100	84.507	ENSLBEG00000022550	smn1	100	83.803	Labrus_bergylta
ENSAPEG00000016504	smn1	99	35.216	ENSLACG00000009808	-	95	36.207	Latimeria_chalumnae
ENSAPEG00000016504	smn1	100	56.294	ENSLOCG00000011339	smn1	100	56.690	Lepisosteus_oculatus
ENSAPEG00000016504	smn1	94	52.747	ENSLAFG00000003425	-	89	53.214	Loxodonta_africana
ENSAPEG00000016504	smn1	94	53.597	ENSMFAG00000031523	SMN1	95	51.493	Macaca_fascicularis
ENSAPEG00000016504	smn1	94	50.000	ENSMFAG00000008812	-	91	49.097	Macaca_fascicularis
ENSAPEG00000016504	smn1	94	53.597	ENSMMUG00000020214	SMN1	92	53.184	Macaca_mulatta
ENSAPEG00000016504	smn1	94	49.640	ENSMMUG00000030594	-	91	48.736	Macaca_mulatta
ENSAPEG00000016504	smn1	94	53.597	ENSMNEG00000035094	-	92	53.184	Macaca_nemestrina
ENSAPEG00000016504	smn1	79	41.228	ENSMNEG00000036423	-	86	40.088	Macaca_nemestrina
ENSAPEG00000016504	smn1	94	53.597	ENSMLEG00000041902	-	93	53.160	Mandrillus_leucophaeus
ENSAPEG00000016504	smn1	100	83.803	ENSMAMG00000011034	smn1	100	82.746	Mastacembelus_armatus
ENSAPEG00000016504	smn1	100	83.746	ENSMZEG00005013634	smn1	100	83.392	Maylandia_zebra
ENSAPEG00000016504	smn1	71	50.746	ENSMGAG00000008889	-	95	46.429	Meleagris_gallopavo
ENSAPEG00000016504	smn1	94	52.899	ENSMAUG00000010262	Smn1	93	51.481	Mesocricetus_auratus
ENSAPEG00000016504	smn1	83	46.559	ENSMICG00000034708	-	81	55.556	Microcebus_murinus
ENSAPEG00000016504	smn1	94	53.091	ENSMOCG00000017833	Smn1	93	52.222	Microtus_ochrogaster
ENSAPEG00000016504	smn1	96	73.801	ENSMMOG00000005504	smn1	98	71.111	Mola_mola
ENSAPEG00000016504	smn1	94	55.515	ENSMODG00000001436	-	92	51.852	Monodelphis_domestica
ENSAPEG00000016504	smn1	100	85.915	ENSMALG00000008025	smn1	100	84.507	Monopterus_albus
ENSAPEG00000016504	smn1	94	53.986	MGP_CAROLIEiJ_G0018836	Smn1	93	53.875	Mus_caroli
ENSAPEG00000016504	smn1	94	53.986	ENSMUSG00000021645	Smn1	93	53.875	Mus_musculus
ENSAPEG00000016504	smn1	94	55.390	MGP_PahariEiJ_G0015911	Smn1	93	53.875	Mus_pahari
ENSAPEG00000016504	smn1	94	53.986	MGP_SPRETEiJ_G0019718	Smn1	93	53.506	Mus_spretus
ENSAPEG00000016504	smn1	92	53.137	ENSMPUG00000014470	-	93	53.875	Mustela_putorius_furo
ENSAPEG00000016504	smn1	94	50.352	ENSMLUG00000010603	-	89	50.526	Myotis_lucifugus
ENSAPEG00000016504	smn1	94	51.273	ENSNGAG00000019833	Smn1	93	52.158	Nannospalax_galili
ENSAPEG00000016504	smn1	100	84.806	ENSNBRG00000023000	smn1	100	84.806	Neolamprologus_brichardi
ENSAPEG00000016504	smn1	94	53.237	ENSNLEG00000004454	-	92	52.434	Nomascus_leucogenys
ENSAPEG00000016504	smn1	69	51.795	ENSMEUG00000011393	-	100	48.927	Notamacropus_eugenii
ENSAPEG00000016504	smn1	91	49.430	ENSOPRG00000002015	-	100	50.193	Ochotona_princeps
ENSAPEG00000016504	smn1	91	54.647	ENSODEG00000015976	-	91	55.390	Octodon_degus
ENSAPEG00000016504	smn1	100	84.452	ENSONIG00000011799	smn1	100	84.452	Oreochromis_niloticus
ENSAPEG00000016504	smn1	94	48.399	ENSOANG00000001626	-	95	46.377	Ornithorhynchus_anatinus
ENSAPEG00000016504	smn1	94	53.261	ENSOCUG00000026649	-	92	50.530	Oryctolagus_cuniculus
ENSAPEG00000016504	smn1	94	42.349	ENSOCUG00000025183	-	92	43.321	Oryctolagus_cuniculus
ENSAPEG00000016504	smn1	94	53.875	ENSOCUG00000017097	-	92	51.079	Oryctolagus_cuniculus
ENSAPEG00000016504	smn1	100	79.505	ENSORLG00000010552	smn1	100	79.505	Oryzias_latipes
ENSAPEG00000016504	smn1	100	74.910	ENSORLG00020007936	smn1	100	72.183	Oryzias_latipes_hni
ENSAPEG00000016504	smn1	100	79.152	ENSORLG00015022425	smn1	100	79.152	Oryzias_latipes_hsok
ENSAPEG00000016504	smn1	100	80.565	ENSOMEG00000007824	smn1	100	80.565	Oryzias_melastigma
ENSAPEG00000016504	smn1	91	49.627	ENSOGAG00000031414	-	92	48.175	Otolemur_garnettii
ENSAPEG00000016504	smn1	94	53.053	ENSOARG00000005425	-	97	50.182	Ovis_aries
ENSAPEG00000016504	smn1	94	52.878	ENSPPAG00000036640	-	92	52.060	Pan_paniscus
ENSAPEG00000016504	smn1	94	52.708	ENSPPRG00000005575	-	93	52.347	Panthera_pardus
ENSAPEG00000016504	smn1	94	52.518	ENSPTIG00000007745	-	93	52.347	Panthera_tigris_altaica
ENSAPEG00000016504	smn1	94	52.313	ENSPTRG00000016955	-	92	52.060	Pan_troglodytes
ENSAPEG00000016504	smn1	94	53.597	ENSPANG00000013601	-	91	52.899	Papio_anubis
ENSAPEG00000016504	smn1	94	50.376	ENSPANG00000000253	-	91	49.819	Papio_anubis
ENSAPEG00000016504	smn1	100	60.351	ENSPKIG00000011096	smn1	100	59.649	Paramormyrops_kingsleyae
ENSAPEG00000016504	smn1	95	50.554	ENSPSIG00000014787	-	83	50.000	Pelodiscus_sinensis
ENSAPEG00000016504	smn1	100	72.378	ENSPMGG00000012285	smn1	100	67.007	Periophthalmus_magnuspinnatus
ENSAPEG00000016504	smn1	94	41.176	ENSPMAG00000005004	smn1	91	38.806	Petromyzon_marinus
ENSAPEG00000016504	smn1	94	55.147	ENSPCIG00000025764	-	93	51.481	Phascolarctos_cinereus
ENSAPEG00000016504	smn1	100	82.332	ENSPFOG00000007786	smn1	100	82.332	Poecilia_formosa
ENSAPEG00000016504	smn1	100	82.686	ENSPLAG00000012071	smn1	100	82.686	Poecilia_latipinna
ENSAPEG00000016504	smn1	100	82.332	ENSPMEG00000017085	smn1	100	82.332	Poecilia_mexicana
ENSAPEG00000016504	smn1	100	82.686	ENSPREG00000005824	smn1	100	82.686	Poecilia_reticulata
ENSAPEG00000016504	smn1	52	46.207	ENSPPYG00000019189	-	99	37.805	Pongo_abelii
ENSAPEG00000016504	smn1	94	51.292	ENSPPYG00000015533	-	95	50.373	Pongo_abelii
ENSAPEG00000016504	smn1	93	51.825	ENSPCAG00000004187	-	98	51.460	Procavia_capensis
ENSAPEG00000016504	smn1	65	51.648	ENSPCOG00000022307	-	70	54.839	Propithecus_coquereli
ENSAPEG00000016504	smn1	94	53.986	ENSPVAG00000005977	-	92	52.708	Pteropus_vampyrus
ENSAPEG00000016504	smn1	100	84.806	ENSPNYG00000014148	smn1	100	84.806	Pundamilia_nyererei
ENSAPEG00000016504	smn1	100	65.035	ENSPNAG00000014007	smn1	87	66.434	Pygocentrus_nattereri
ENSAPEG00000016504	smn1	94	53.455	ENSRNOG00000018067	Smn1	92	53.506	Rattus_norvegicus
ENSAPEG00000016504	smn1	94	53.237	ENSRBIG00000037052	-	91	52.536	Rhinopithecus_bieti
ENSAPEG00000016504	smn1	97	47.810	ENSRBIG00000036775	-	93	46.953	Rhinopithecus_bieti
ENSAPEG00000016504	smn1	94	53.237	ENSRROG00000039399	-	94	50.883	Rhinopithecus_roxellana
ENSAPEG00000016504	smn1	94	49.259	ENSRROG00000031088	-	91	45.296	Rhinopithecus_roxellana
ENSAPEG00000016504	smn1	57	55.280	ENSSBOG00000020112	-	87	45.600	Saimiri_boliviensis_boliviensis
ENSAPEG00000016504	smn1	94	54.909	ENSSBOG00000011665	-	91	50.752	Saimiri_boliviensis_boliviensis
ENSAPEG00000016504	smn1	94	55.515	ENSSHAG00000001499	-	98	49.259	Sarcophilus_harrisii
ENSAPEG00000016504	smn1	100	61.538	ENSSFOG00015015507	smn1	100	60.839	Scleropages_formosus
ENSAPEG00000016504	smn1	100	80.565	ENSSMAG00000007922	smn1	100	80.565	Scophthalmus_maximus
ENSAPEG00000016504	smn1	100	88.028	ENSSDUG00000018533	smn1	100	86.268	Seriola_dumerili
ENSAPEG00000016504	smn1	100	88.380	ENSSLDG00000021135	smn1	100	86.620	Seriola_lalandi_dorsalis
ENSAPEG00000016504	smn1	96	54.676	ENSSPUG00000000373	-	99	50.699	Sphenodon_punctatus
ENSAPEG00000016504	smn1	100	90.813	ENSSPAG00000004345	smn1	100	90.813	Stegastes_partitus
ENSAPEG00000016504	smn1	94	40.741	ENSSSCG00000029127	-	75	68.750	Sus_scrofa
ENSAPEG00000016504	smn1	94	53.069	ENSSSCG00000016970	-	92	54.676	Sus_scrofa
ENSAPEG00000016504	smn1	91	50.725	ENSTGUG00000001548	-	97	48.339	Taeniopygia_guttata
ENSAPEG00000016504	smn1	100	68.551	ENSTRUG00000000736	smn	100	68.905	Takifugu_rubripes
ENSAPEG00000016504	smn1	100	67.931	ENSTNIG00000009892	smn1	100	70.345	Tetraodon_nigroviridis
ENSAPEG00000016504	smn1	65	55.978	ENSTBEG00000002399	-	87	56.906	Tupaia_belangeri
ENSAPEG00000016504	smn1	94	54.380	ENSTTRG00000005080	-	91	53.676	Tursiops_truncatus
ENSAPEG00000016504	smn1	58	60.000	ENSUAMG00000024947	-	66	57.459	Ursus_americanus
ENSAPEG00000016504	smn1	94	54.348	ENSUMAG00000007842	-	69	53.069	Ursus_maritimus
ENSAPEG00000016504	smn1	91	49.808	ENSVPAG00000009887	-	61	82.609	Vicugna_pacos
ENSAPEG00000016504	smn1	94	51.971	ENSVVUG00000006934	-	93	51.986	Vulpes_vulpes
ENSAPEG00000016504	smn1	90	32.432	ENSXETG00000004912	-	82	62.069	Xenopus_tropicalis
ENSAPEG00000016504	smn1	95	56.738	ENSXETG00000018189	smn2	95	50.859	Xenopus_tropicalis
ENSAPEG00000016504	smn1	100	81.625	ENSXMAG00000001521	smn1	100	81.625	Xiphophorus_maculatus