EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPEG00000019101 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Minus strand
Length: 16730 bases
Position: chr15:12329613-12346342
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000026872	EST1	PF10374.9	6.2e-13	1	1
ENSAPEP00000026872	EST1_DNA_bind	PF10373.9	7.5e-57	1	1
ENSAPEP00000026872	PIN_4	PF13638.6	6.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000027588	-	7015	-	ENSAPEP00000026872	1647 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000019101's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000019101's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000019101	smg6	74	55.234	ENSG00000070366	SMG6	100	57.770	Homo_sapiens
ENSAPEG00000019101	smg6	100	95.811	ENSAPOG00000019448	smg6	100	95.811	Acanthochromis_polyacanthus
ENSAPEG00000019101	smg6	74	55.234	ENSAMEG00000007632	SMG6	83	55.039	Ailuropoda_melanoleuca
ENSAPEG00000019101	smg6	93	80.155	ENSACIG00000012997	smg6	100	79.703	Amphilophus_citrinellus
ENSAPEG00000019101	smg6	100	99.089	ENSAOCG00000002630	smg6	100	99.089	Amphiprion_ocellaris
ENSAPEG00000019101	smg6	100	79.129	ENSATEG00000006483	smg6	100	78.772	Anabas_testudineus
ENSAPEG00000019101	smg6	64	48.683	ENSACAG00000011783	SMG6	72	52.915	Anolis_carolinensis
ENSAPEG00000019101	smg6	74	55.156	ENSANAG00000035760	SMG6	71	59.762	Aotus_nancymaae
ENSAPEG00000019101	smg6	100	81.052	ENSACLG00000005288	smg6	100	81.302	Astatotilapia_calliptera
ENSAPEG00000019101	smg6	72	69.156	ENSAMXG00000017326	smg6	98	68.071	Astyanax_mexicanus
ENSAPEG00000019101	smg6	75	55.000	ENSBTAG00000000267	SMG6	87	54.587	Bos_taurus
ENSAPEG00000019101	smg6	74	55.425	ENSCJAG00000001820	SMG6	71	59.670	Callithrix_jacchus
ENSAPEG00000019101	smg6	74	55.391	ENSCAFG00000019260	SMG6	83	55.354	Canis_familiaris
ENSAPEG00000019101	smg6	74	55.391	ENSCAFG00020009770	SMG6	83	55.354	Canis_lupus_dingo
ENSAPEG00000019101	smg6	74	55.391	ENSCHIG00000021998	SMG6	87	54.211	Capra_hircus
ENSAPEG00000019101	smg6	74	54.992	ENSTSYG00000003406	SMG6	100	57.221	Carlito_syrichta
ENSAPEG00000019101	smg6	67	53.409	ENSCAPG00000016197	SMG6	81	49.091	Cavia_aperea
ENSAPEG00000019101	smg6	74	54.553	ENSCPOG00000014878	SMG6	92	56.769	Cavia_porcellus
ENSAPEG00000019101	smg6	75	54.538	ENSCCAG00000035801	SMG6	71	59.578	Cebus_capucinus
ENSAPEG00000019101	smg6	74	55.078	ENSCATG00000031956	SMG6	71	59.487	Cercocebus_atys
ENSAPEG00000019101	smg6	74	54.658	ENSCLAG00000006748	SMG6	91	56.332	Chinchilla_lanigera
ENSAPEG00000019101	smg6	74	55.391	ENSCSAG00000013800	SMG6	71	59.762	Chlorocebus_sabaeus
ENSAPEG00000019101	smg6	78	53.165	ENSCPBG00000020369	SMG6	87	52.703	Chrysemys_picta_bellii
ENSAPEG00000019101	smg6	74	55.078	ENSCANG00000031764	SMG6	100	58.135	Colobus_angolensis_palliatus
ENSAPEG00000019101	smg6	74	50.431	ENSCGRG00000007782	Smg6	72	54.270	Cricetulus_griseus_crigri
ENSAPEG00000019101	smg6	95	71.879	ENSCSEG00000012757	smg6	100	71.360	Cynoglossus_semilaevis
ENSAPEG00000019101	smg6	100	71.704	ENSCVAG00000012789	smg6	100	71.024	Cyprinodon_variegatus
ENSAPEG00000019101	smg6	100	58.253	ENSDARG00000100481	smg6	100	56.902	Danio_rerio
ENSAPEG00000019101	smg6	74	54.453	ENSDNOG00000048283	SMG6	83	54.016	Dasypus_novemcinctus
ENSAPEG00000019101	smg6	74	51.210	ENSDORG00000016614	Smg6	92	56.769	Dipodomys_ordii
ENSAPEG00000019101	smg6	72	90.000	ENSETEG00000016790	SMG6	59	90.000	Echinops_telfairi
ENSAPEG00000019101	smg6	60	47.498	ENSEBUG00000005059	smg6	63	46.798	Eptatretus_burgeri
ENSAPEG00000019101	smg6	74	54.977	ENSEASG00005009318	SMG6	86	53.480	Equus_asinus_asinus
ENSAPEG00000019101	smg6	74	54.977	ENSECAG00000006519	SMG6	86	53.480	Equus_caballus
ENSAPEG00000019101	smg6	74	47.298	ENSEEUG00000003493	SMG6	82	57.500	Erinaceus_europaeus
ENSAPEG00000019101	smg6	100	65.522	ENSELUG00000005934	smg6	96	70.470	Esox_lucius
ENSAPEG00000019101	smg6	74	55.047	ENSFCAG00000028817	SMG6	83	55.197	Felis_catus
ENSAPEG00000019101	smg6	78	54.443	ENSFALG00000006538	SMG6	88	53.782	Ficedula_albicollis
ENSAPEG00000019101	smg6	74	54.844	ENSFDAG00000015106	SMG6	91	55.895	Fukomys_damarensis
ENSAPEG00000019101	smg6	100	71.911	ENSFHEG00000013282	smg6	100	71.042	Fundulus_heteroclitus
ENSAPEG00000019101	smg6	78	53.933	ENSGALG00000003108	SMG6	85	52.994	Gallus_gallus
ENSAPEG00000019101	smg6	100	72.864	ENSGAFG00000000379	smg6	100	72.486	Gambusia_affinis
ENSAPEG00000019101	smg6	90	78.736	ENSGACG00000020521	smg6	100	77.455	Gasterosteus_aculeatus
ENSAPEG00000019101	smg6	78	52.647	ENSGAGG00000025617	SMG6	89	51.943	Gopherus_agassizii
ENSAPEG00000019101	smg6	74	55.234	ENSGGOG00000017156	SMG6	71	59.670	Gorilla_gorilla
ENSAPEG00000019101	smg6	100	81.291	ENSHBUG00000021311	smg6	100	80.335	Haplochromis_burtoni
ENSAPEG00000019101	smg6	77	53.910	ENSHGLG00000012882	SMG6	91	56.332	Heterocephalus_glaber_female
ENSAPEG00000019101	smg6	77	54.062	ENSHGLG00100017815	SMG6	91	56.332	Heterocephalus_glaber_male
ENSAPEG00000019101	smg6	65	71.733	ENSHCOG00000008761	smg6	83	71.922	Hippocampus_comes
ENSAPEG00000019101	smg6	100	54.944	ENSIPUG00000012493	smg6	100	54.368	Ictalurus_punctatus
ENSAPEG00000019101	smg6	74	54.992	ENSSTOG00000028127	SMG6	92	56.332	Ictidomys_tridecemlineatus
ENSAPEG00000019101	smg6	55	51.949	ENSJJAG00000015367	Smg6	61	56.423	Jaculus_jaculus
ENSAPEG00000019101	smg6	100	75.359	ENSKMAG00000000279	smg6	100	75.105	Kryptolebias_marmoratus
ENSAPEG00000019101	smg6	100	78.017	ENSLBEG00000002184	smg6	100	77.645	Labrus_bergylta
ENSAPEG00000019101	smg6	67	66.726	ENSLOCG00000006448	smg6	99	56.568	Lepisosteus_oculatus
ENSAPEG00000019101	smg6	74	54.574	ENSLAFG00000001261	SMG6	86	53.106	Loxodonta_africana
ENSAPEG00000019101	smg6	74	55.391	ENSMFAG00000003394	SMG6	71	59.762	Macaca_fascicularis
ENSAPEG00000019101	smg6	74	55.312	ENSMMUG00000023161	SMG6	71	59.670	Macaca_mulatta
ENSAPEG00000019101	smg6	74	52.937	ENSMNEG00000044592	SMG6	83	52.760	Macaca_nemestrina
ENSAPEG00000019101	smg6	70	59.683	ENSMLEG00000029353	SMG6	71	63.311	Mandrillus_leucophaeus
ENSAPEG00000019101	smg6	100	80.765	ENSMAMG00000020119	smg6	100	81.262	Mastacembelus_armatus
ENSAPEG00000019101	smg6	100	80.873	ENSMZEG00005024736	smg6	100	80.144	Maylandia_zebra
ENSAPEG00000019101	smg6	54	51.761	ENSMGAG00000005401	-	82	51.123	Meleagris_gallopavo
ENSAPEG00000019101	smg6	74	55.278	ENSMICG00000012913	SMG6	83	55.008	Microcebus_murinus
ENSAPEG00000019101	smg6	100	72.138	ENSMMOG00000010883	smg6	100	72.078	Mola_mola
ENSAPEG00000019101	smg6	74	55.747	ENSMODG00000010622	SMG6	83	54.788	Monodelphis_domestica
ENSAPEG00000019101	smg6	100	79.964	ENSMALG00000001106	smg6	100	79.486	Monopterus_albus
ENSAPEG00000019101	smg6	74	54.460	MGP_CAROLIEiJ_G0016729	Smg6	98	64.208	Mus_caroli
ENSAPEG00000019101	smg6	74	54.489	ENSMUSG00000038290	Smg6	96	65.915	Mus_musculus
ENSAPEG00000019101	smg6	74	54.219	MGP_PahariEiJ_G0017866	Smg6	96	65.352	Mus_pahari
ENSAPEG00000019101	smg6	74	54.411	MGP_SPRETEiJ_G0017572	Smg6	96	65.634	Mus_spretus
ENSAPEG00000019101	smg6	74	55.339	ENSMPUG00000013046	SMG6	83	55.067	Mustela_putorius_furo
ENSAPEG00000019101	smg6	74	55.399	ENSMLUG00000005739	SMG6	83	55.249	Myotis_lucifugus
ENSAPEG00000019101	smg6	74	54.617	ENSNGAG00000007287	Smg6	92	56.332	Nannospalax_galili
ENSAPEG00000019101	smg6	98	77.566	ENSNBRG00000009511	smg6	99	79.367	Neolamprologus_brichardi
ENSAPEG00000019101	smg6	74	55.234	ENSNLEG00000017171	SMG6	100	57.770	Nomascus_leucogenys
ENSAPEG00000019101	smg6	74	54.702	ENSMEUG00000015804	SMG6	85	53.888	Notamacropus_eugenii
ENSAPEG00000019101	smg6	51	62.632	ENSOPRG00000000579	SMG6	82	61.458	Ochotona_princeps
ENSAPEG00000019101	smg6	74	49.098	ENSODEG00000008038	SMG6	81	54.651	Octodon_degus
ENSAPEG00000019101	smg6	100	81.351	ENSONIG00000005594	smg6	100	83.437	Oreochromis_niloticus
ENSAPEG00000019101	smg6	77	53.916	ENSOCUG00000013018	SMG6	87	53.864	Oryctolagus_cuniculus
ENSAPEG00000019101	smg6	100	70.669	ENSORLG00000003317	smg6	100	70.430	Oryzias_latipes
ENSAPEG00000019101	smg6	100	70.746	ENSORLG00020015343	smg6	100	70.592	Oryzias_latipes_hni
ENSAPEG00000019101	smg6	100	71.062	ENSORLG00015020454	smg6	100	70.848	Oryzias_latipes_hsok
ENSAPEG00000019101	smg6	100	69.586	ENSOMEG00000010838	smg6	100	70.006	Oryzias_melastigma
ENSAPEG00000019101	smg6	74	55.382	ENSOGAG00000004483	SMG6	74	58.719	Otolemur_garnettii
ENSAPEG00000019101	smg6	74	55.391	ENSOARG00000015076	SMG6	88	54.288	Ovis_aries
ENSAPEG00000019101	smg6	74	55.078	ENSPPAG00000043296	SMG6	71	59.487	Pan_paniscus
ENSAPEG00000019101	smg6	74	55.047	ENSPPRG00000014581	SMG6	83	55.197	Panthera_pardus
ENSAPEG00000019101	smg6	74	55.047	ENSPTIG00000008925	SMG6	100	57.952	Panthera_tigris_altaica
ENSAPEG00000019101	smg6	74	55.312	ENSPTRG00000008544	SMG6	100	57.770	Pan_troglodytes
ENSAPEG00000019101	smg6	74	55.312	ENSPANG00000024588	SMG6	71	59.670	Papio_anubis
ENSAPEG00000019101	smg6	72	50.606	ENSPSIG00000006660	SMG6	86	50.576	Pelodiscus_sinensis
ENSAPEG00000019101	smg6	95	81.063	ENSPMGG00000000844	smg6	99	80.109	Periophthalmus_magnuspinnatus
ENSAPEG00000019101	smg6	74	55.016	ENSPEMG00000020707	Smg6	93	55.895	Peromyscus_maniculatus_bairdii
ENSAPEG00000019101	smg6	100	73.960	ENSPFOG00000012035	smg6	100	73.221	Poecilia_formosa
ENSAPEG00000019101	smg6	100	74.188	ENSPLAG00000017660	smg6	100	73.402	Poecilia_latipinna
ENSAPEG00000019101	smg6	100	74.141	ENSPMEG00000000258	smg6	100	73.402	Poecilia_mexicana
ENSAPEG00000019101	smg6	100	73.253	ENSPREG00000010066	smg6	100	72.634	Poecilia_reticulata
ENSAPEG00000019101	smg6	74	51.090	ENSPPYG00000007790	SMG6	71	54.795	Pongo_abelii
ENSAPEG00000019101	smg6	71	59.773	ENSPCAG00000000552	SMG6	67	60.000	Procavia_capensis
ENSAPEG00000019101	smg6	74	54.922	ENSPCOG00000020925	SMG6	83	54.805	Propithecus_coquereli
ENSAPEG00000019101	smg6	70	62.692	ENSPVAG00000002159	SMG6	72	55.270	Pteropus_vampyrus
ENSAPEG00000019101	smg6	93	78.264	ENSPNYG00000024151	smg6	99	79.169	Pundamilia_nyererei
ENSAPEG00000019101	smg6	100	53.760	ENSPNAG00000015480	smg6	100	53.070	Pygocentrus_nattereri
ENSAPEG00000019101	smg6	74	54.574	ENSRNOG00000003041	Smg6	97	65.027	Rattus_norvegicus
ENSAPEG00000019101	smg6	74	55.391	ENSRBIG00000024746	SMG6	71	59.762	Rhinopithecus_bieti
ENSAPEG00000019101	smg6	74	55.391	ENSRROG00000030423	SMG6	100	58.135	Rhinopithecus_roxellana
ENSAPEG00000019101	smg6	74	54.922	ENSSBOG00000022518	SMG6	71	57.562	Saimiri_boliviensis_boliviensis
ENSAPEG00000019101	smg6	74	55.486	ENSSHAG00000010045	SMG6	83	54.913	Sarcophilus_harrisii
ENSAPEG00000019101	smg6	100	51.732	ENSSFOG00015005436	smg6	87	55.957	Scleropages_formosus
ENSAPEG00000019101	smg6	100	78.362	ENSSMAG00000019777	smg6	100	78.050	Scophthalmus_maximus
ENSAPEG00000019101	smg6	100	83.871	ENSSDUG00000016412	smg6	100	83.274	Seriola_dumerili
ENSAPEG00000019101	smg6	91	84.089	ENSSLDG00000020747	smg6	98	83.377	Seriola_lalandi_dorsalis
ENSAPEG00000019101	smg6	79	52.388	ENSSPUG00000007152	SMG6	89	51.929	Sphenodon_punctatus
ENSAPEG00000019101	smg6	100	92.420	ENSSPAG00000015633	smg6	100	92.298	Stegastes_partitus
ENSAPEG00000019101	smg6	74	55.469	ENSSSCG00000017826	SMG6	83	55.205	Sus_scrofa
ENSAPEG00000019101	smg6	78	53.713	ENSTGUG00000005836	SMG6	88	53.253	Taeniopygia_guttata
ENSAPEG00000019101	smg6	94	84.375	ENSTRUG00000000358	smg6	99	84.375	Takifugu_rubripes
ENSAPEG00000019101	smg6	96	75.695	ENSTNIG00000016164	smg6	100	78.484	Tetraodon_nigroviridis
ENSAPEG00000019101	smg6	74	52.941	ENSTBEG00000011424	SMG6	72	56.422	Tupaia_belangeri
ENSAPEG00000019101	smg6	66	56.857	ENSTTRG00000001175	SMG6	74	56.143	Tursiops_truncatus
ENSAPEG00000019101	smg6	74	55.339	ENSUAMG00000025152	SMG6	85	55.328	Ursus_americanus
ENSAPEG00000019101	smg6	74	55.156	ENSUMAG00000009306	SMG6	85	55.344	Ursus_maritimus
ENSAPEG00000019101	smg6	60	95.833	ENSVPAG00000000225	SMG6	70	95.833	Vicugna_pacos
ENSAPEG00000019101	smg6	74	55.965	ENSVVUG00000021727	SMG6	83	54.968	Vulpes_vulpes
ENSAPEG00000019101	smg6	66	54.439	ENSXETG00000023799	SMG6	74	53.826	Xenopus_tropicalis
ENSAPEG00000019101	smg6	98	71.279	ENSXCOG00000009867	smg6	99	70.769	Xiphophorus_couchianus
ENSAPEG00000019101	smg6	100	73.373	ENSXMAG00000010321	smg6	100	72.694	Xiphophorus_maculatus