EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPEG00000019826 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Amphiprion_percula
Status: putative
Strand: Minus strand
Length: 21787 bases
Position: chr17:32845920-32867706
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPEP00000027934	zf-C2H2	PF00096.26	5.6e-19	1	3
ENSAPEP00000027934	zf-C2H2	PF00096.26	5.6e-19	2	3
ENSAPEP00000027934	zf-C2H2	PF00096.26	5.6e-19	3	3
ENSAPEP00000027922	zf-C2H2	PF00096.26	6.6e-19	1	3
ENSAPEP00000027922	zf-C2H2	PF00096.26	6.6e-19	2	3
ENSAPEP00000027922	zf-C2H2	PF00096.26	6.6e-19	3	3
ENSAPEP00000027912	zf-C2H2	PF00096.26	1.2e-18	1	3
ENSAPEP00000027912	zf-C2H2	PF00096.26	1.2e-18	2	3
ENSAPEP00000027912	zf-C2H2	PF00096.26	1.2e-18	3	3
ENSAPEP00000027922	zf-met	PF12874.7	2.8e-06	1	1
ENSAPEP00000027934	zf-met	PF12874.7	3e-06	1	1
ENSAPEP00000027912	zf-met	PF12874.7	6.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPET00000028652	-	3890	-	ENSAPEP00000027912	687 (aa)	-	-
ENSAPET00000028662	-	4042	-	ENSAPEP00000027922	622 (aa)	-	-
ENSAPET00000028674	-	3955	-	ENSAPEP00000027934	593 (aa)	-	-

Gene Model

Click here to download ENSAPEG00000019826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPEG00000019826's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPEG00000019826	prdm1b	52	33.594	ENSAPEG00000016305	PRDM15	63	34.127
ENSAPEG00000019826	prdm1b	53	45.098	ENSAPEG00000006358	znf341	61	30.964
ENSAPEG00000019826	prdm1b	58	42.857	ENSAPEG00000019026	znf236	60	45.679

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPEG00000019826	prdm1b	77	64.286	ENSAPOG00000014135	-	56	58.282	Acanthochromis_polyacanthus
ENSAPEG00000019826	prdm1b	69	91.337	ENSAPOG00000022084	prdm1b	88	92.327	Acanthochromis_polyacanthus
ENSAPEG00000019826	prdm1b	93	35.762	ENSACIG00000009747	-	56	58.282	Amphilophus_citrinellus
ENSAPEG00000019826	prdm1b	97	72.020	ENSACIG00000014426	prdm1b	98	71.144	Amphilophus_citrinellus
ENSAPEG00000019826	prdm1b	96	98.067	ENSAOCG00000002230	prdm1b	99	98.067	Amphiprion_ocellaris
ENSAPEG00000019826	prdm1b	57	62.857	ENSATEG00000014034	-	58	55.828	Anabas_testudineus
ENSAPEG00000019826	prdm1b	100	75.680	ENSATEG00000006924	prdm1b	100	75.840	Anabas_testudineus
ENSAPEG00000019826	prdm1b	56	61.765	ENSATEG00000021017	prdm1a	53	61.765	Anabas_testudineus
ENSAPEG00000019826	prdm1b	94	76.215	ENSACLG00000005487	prdm1b	88	76.950	Astatotilapia_calliptera
ENSAPEG00000019826	prdm1b	67	59.155	ENSCSEG00000009707	prdm1a	69	52.973	Cynoglossus_semilaevis
ENSAPEG00000019826	prdm1b	100	75.809	ENSCVAG00000016746	prdm1b	100	76.090	Cyprinodon_variegatus
ENSAPEG00000019826	prdm1b	67	61.972	ENSCVAG00000019081	prdm1a	74	54.286	Cyprinodon_variegatus
ENSAPEG00000019826	prdm1b	100	75.162	ENSFHEG00000019848	prdm1b	100	75.000	Fundulus_heteroclitus
ENSAPEG00000019826	prdm1b	62	67.143	ENSGAFG00000013012	-	58	55.215	Gambusia_affinis
ENSAPEG00000019826	prdm1b	99	69.475	ENSGAFG00000016191	prdm1b	98	69.751	Gambusia_affinis
ENSAPEG00000019826	prdm1b	94	69.676	ENSGACG00000002716	prdm1b	99	69.688	Gasterosteus_aculeatus
ENSAPEG00000019826	prdm1b	94	76.481	ENSHBUG00000001475	prdm1b	94	76.418	Haplochromis_burtoni
ENSAPEG00000019826	prdm1b	100	71.036	ENSHCOG00000003617	prdm1b	100	71.036	Hippocampus_comes
ENSAPEG00000019826	prdm1b	94	73.750	ENSIPUG00000013740	prdm1b	79	72.000	Ictalurus_punctatus
ENSAPEG00000019826	prdm1b	90	41.026	ENSKMAG00000016247	-	53	56.442	Kryptolebias_marmoratus
ENSAPEG00000019826	prdm1b	54	63.380	ENSKMAG00000017597	prdm1a	59	54.857	Kryptolebias_marmoratus
ENSAPEG00000019826	prdm1b	97	67.391	ENSKMAG00000011218	prdm1b	93	67.672	Kryptolebias_marmoratus
ENSAPEG00000019826	prdm1b	100	76.870	ENSLBEG00000020955	prdm1b	100	76.870	Labrus_bergylta
ENSAPEG00000019826	prdm1b	83	72.619	ENSLOCG00000004978	prdm1b	77	72.619	Lepisosteus_oculatus
ENSAPEG00000019826	prdm1b	100	74.272	ENSMZEG00005026361	prdm1b	95	74.675	Maylandia_zebra
ENSAPEG00000019826	prdm1b	95	73.277	ENSMMOG00000013458	prdm1b	93	74.336	Mola_mola
ENSAPEG00000019826	prdm1b	97	69.934	ENSMALG00000011410	prdm1b	99	69.601	Monopterus_albus
ENSAPEG00000019826	prdm1b	57	61.429	ENSMALG00000000462	-	57	55.828	Monopterus_albus
ENSAPEG00000019826	prdm1b	54	58.282	ENSONIG00000014709	-	57	58.282	Oreochromis_niloticus
ENSAPEG00000019826	prdm1b	92	92.105	ENSONIG00000013583	prdm1b	90	89.017	Oreochromis_niloticus
ENSAPEG00000019826	prdm1b	99	68.679	ENSORLG00000010025	prdm1b	99	67.961	Oryzias_latipes
ENSAPEG00000019826	prdm1b	92	68.641	ENSORLG00015009022	prdm1b	92	68.935	Oryzias_latipes_hsok
ENSAPEG00000019826	prdm1b	99	55.427	ENSPKIG00000022335	prdm1b	97	55.959	Paramormyrops_kingsleyae
ENSAPEG00000019826	prdm1b	90	69.077	ENSPFOG00000003103	prdm1b	82	85.294	Poecilia_formosa
ENSAPEG00000019826	prdm1b	99	72.436	ENSPLAG00000018491	prdm1b	99	72.320	Poecilia_latipinna
ENSAPEG00000019826	prdm1b	100	74.235	ENSPMEG00000007869	prdm1b	100	74.235	Poecilia_mexicana
ENSAPEG00000019826	prdm1b	99	73.120	ENSPREG00000011327	prdm1b	99	72.843	Poecilia_reticulata
ENSAPEG00000019826	prdm1b	92	44.041	ENSPNAG00000028442	prdm1a	69	54.971	Pygocentrus_nattereri
ENSAPEG00000019826	prdm1b	95	64.231	ENSSFOG00015021896	prdm1b	92	65.055	Scleropages_formosus
ENSAPEG00000019826	prdm1b	100	78.442	ENSSMAG00000020467	prdm1b	100	78.442	Scophthalmus_maximus
ENSAPEG00000019826	prdm1b	56	64.286	ENSSMAG00000017518	-	53	55.828	Scophthalmus_maximus
ENSAPEG00000019826	prdm1b	54	65.714	ENSSDUG00000000524	-	53	56.442	Seriola_dumerili
ENSAPEG00000019826	prdm1b	100	77.070	ENSSDUG00000020610	prdm1b	100	76.911	Seriola_dumerili
ENSAPEG00000019826	prdm1b	100	78.670	ENSSLDG00000021973	prdm1b	100	78.532	Seriola_lalandi_dorsalis
ENSAPEG00000019826	prdm1b	54	64.286	ENSSLDG00000001957	-	53	55.828	Seriola_lalandi_dorsalis
ENSAPEG00000019826	prdm1b	94	40.972	ENSSPAG00000009830	-	90	40.871	Stegastes_partitus
ENSAPEG00000019826	prdm1b	100	83.140	ENSSPAG00000000803	prdm1b	100	83.306	Stegastes_partitus
ENSAPEG00000019826	prdm1b	97	75.258	ENSXCOG00000018920	prdm1b	98	75.441	Xiphophorus_couchianus
ENSAPEG00000019826	prdm1b	100	69.577	ENSXMAG00000016765	prdm1b	95	71.972	Xiphophorus_maculatus