EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAPLG00000003993 (Gene tree)
Gene ID: -
Gene Symbol: SF3B1
Alias: -
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Minus strand
Length: 17327 bases
Position: chrKB743301.1:1128635-1145961
Accession: 101804459
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000003517	SF3b1	PF08920.10	3.8e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000004118	SF3B1-201	4372	XM_005021907	ENSAPLP00000003517	1301 (aa)	-	U3I8E6

Gene Model

Click here to download ENSAPLG00000003993's gene model file

Pathways

Pathway ID	Pathway Name	Source
apla03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000003993's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000003993	SF3B1	99	99.382	ENSG00000115524	SF3B1	99	99.382	Homo_sapiens
ENSAPLG00000003993	SF3B1	99	93.937	ENSAPOG00000011894	sf3b1	99	93.798	Acanthochromis_polyacanthus
ENSAPLG00000003993	SF3B1	100	98.621	ENSAMEG00000013809	SF3B1	100	98.621	Ailuropoda_melanoleuca
ENSAPLG00000003993	SF3B1	99	93.236	ENSACIG00000020910	sf3b1	96	93.236	Amphilophus_citrinellus
ENSAPLG00000003993	SF3B1	99	93.798	ENSAOCG00000004478	sf3b1	99	93.798	Amphiprion_ocellaris
ENSAPLG00000003993	SF3B1	99	93.798	ENSAPEG00000012937	sf3b1	99	93.798	Amphiprion_percula
ENSAPLG00000003993	SF3B1	99	94.009	ENSATEG00000020435	sf3b1	99	94.009	Anabas_testudineus
ENSAPLG00000003993	SF3B1	99	99.072	ENSACAG00000009612	SF3B1	99	99.072	Anolis_carolinensis
ENSAPLG00000003993	SF3B1	99	99.382	ENSANAG00000021577	SF3B1	100	99.741	Aotus_nancymaae
ENSAPLG00000003993	SF3B1	99	92.874	ENSACLG00000023470	sf3b1	99	92.874	Astatotilapia_calliptera
ENSAPLG00000003993	SF3B1	99	94.104	ENSAMXG00000002219	sf3b1	99	94.104	Astyanax_mexicanus
ENSAPLG00000003993	SF3B1	99	99.305	ENSBTAG00000008915	SF3B1	99	99.305	Bos_taurus
ENSAPLG00000003993	SF3B1	98	66.616	WBGene00011605	sftb-1	98	66.717	Caenorhabditis_elegans
ENSAPLG00000003993	SF3B1	99	99.382	ENSCJAG00000003902	SF3B1	99	99.382	Callithrix_jacchus
ENSAPLG00000003993	SF3B1	99	99.382	ENSCAFG00000010826	SF3B1	99	99.382	Canis_familiaris
ENSAPLG00000003993	SF3B1	99	99.382	ENSCAFG00020004750	SF3B1	99	99.382	Canis_lupus_dingo
ENSAPLG00000003993	SF3B1	99	99.305	ENSCHIG00000015226	SF3B1	99	99.305	Capra_hircus
ENSAPLG00000003993	SF3B1	99	99.305	ENSTSYG00000009214	SF3B1	99	99.305	Carlito_syrichta
ENSAPLG00000003993	SF3B1	99	99.383	ENSCAPG00000006547	SF3B1	99	99.383	Cavia_aperea
ENSAPLG00000003993	SF3B1	99	99.383	ENSCPOG00000009353	SF3B1	100	99.382	Cavia_porcellus
ENSAPLG00000003993	SF3B1	99	99.382	ENSCCAG00000020506	SF3B1	99	99.382	Cebus_capucinus
ENSAPLG00000003993	SF3B1	99	99.382	ENSCATG00000035735	SF3B1	99	99.382	Cercocebus_atys
ENSAPLG00000003993	SF3B1	99	99.382	ENSCLAG00000014767	SF3B1	99	99.382	Chinchilla_lanigera
ENSAPLG00000003993	SF3B1	99	99.382	ENSCSAG00000011505	SF3B1	99	99.382	Chlorocebus_sabaeus
ENSAPLG00000003993	SF3B1	76	96.429	ENSCHOG00000009860	SF3B1	75	96.429	Choloepus_hoffmanni
ENSAPLG00000003993	SF3B1	99	99.536	ENSCPBG00000021902	SF3B1	100	99.660	Chrysemys_picta_bellii
ENSAPLG00000003993	SF3B1	68	78.060	ENSCING00000002558	-	100	78.414	Ciona_intestinalis
ENSAPLG00000003993	SF3B1	99	79.954	ENSCSAVG00000002559	-	99	79.802	Ciona_savignyi
ENSAPLG00000003993	SF3B1	99	99.382	ENSCANG00000029415	SF3B1	99	99.382	Colobus_angolensis_palliatus
ENSAPLG00000003993	SF3B1	99	99.382	ENSCGRG00001016990	Sf3b1	99	99.382	Cricetulus_griseus_chok1gshd
ENSAPLG00000003993	SF3B1	99	99.382	ENSCGRG00000005301	Sf3b1	99	99.382	Cricetulus_griseus_crigri
ENSAPLG00000003993	SF3B1	99	90.161	ENSCSEG00000003860	sf3b1	99	90.161	Cynoglossus_semilaevis
ENSAPLG00000003993	SF3B1	95	93.939	ENSCVAG00000003680	sf3b1	99	93.939	Cyprinodon_variegatus
ENSAPLG00000003993	SF3B1	99	93.798	ENSDARG00000056138	sf3b1	99	93.798	Danio_rerio
ENSAPLG00000003993	SF3B1	99	99.306	ENSDNOG00000011754	SF3B1	99	99.306	Dasypus_novemcinctus
ENSAPLG00000003993	SF3B1	99	96.909	ENSDORG00000002399	Sf3b1	100	96.909	Dipodomys_ordii
ENSAPLG00000003993	SF3B1	99	76.723	FBgn0031266	Sf3b1	99	76.723	Drosophila_melanogaster
ENSAPLG00000003993	SF3B1	83	98.701	ENSETEG00000009188	SF3B1	100	98.701	Echinops_telfairi
ENSAPLG00000003993	SF3B1	99	87.692	ENSEBUG00000004325	sf3b1	100	90.174	Eptatretus_burgeri
ENSAPLG00000003993	SF3B1	99	99.382	ENSEASG00005020159	SF3B1	97	99.382	Equus_asinus_asinus
ENSAPLG00000003993	SF3B1	99	99.382	ENSECAG00000021657	SF3B1	97	99.382	Equus_caballus
ENSAPLG00000003993	SF3B1	86	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSAPLG00000003993	SF3B1	99	92.776	ENSELUG00000005977	sf3b1	97	93.004	Esox_lucius
ENSAPLG00000003993	SF3B1	99	99.382	ENSFCAG00000005038	SF3B1	99	99.382	Felis_catus
ENSAPLG00000003993	SF3B1	99	99.461	ENSFALG00000004281	SF3B1	99	99.461	Ficedula_albicollis
ENSAPLG00000003993	SF3B1	99	99.382	ENSFDAG00000017510	SF3B1	99	99.382	Fukomys_damarensis
ENSAPLG00000003993	SF3B1	99	92.956	ENSFHEG00000014333	sf3b1	99	92.956	Fundulus_heteroclitus
ENSAPLG00000003993	SF3B1	99	93.477	ENSGMOG00000006773	sf3b1	99	93.477	Gadus_morhua
ENSAPLG00000003993	SF3B1	99	100.000	ENSGALG00000008038	SF3B1	99	100.000	Gallus_gallus
ENSAPLG00000003993	SF3B1	98	94.315	ENSGAFG00000000704	sf3b1	99	94.315	Gambusia_affinis
ENSAPLG00000003993	SF3B1	99	93.016	ENSGACG00000008839	sf3b1	99	93.477	Gasterosteus_aculeatus
ENSAPLG00000003993	SF3B1	99	99.536	ENSGAGG00000017478	SF3B1	99	99.536	Gopherus_agassizii
ENSAPLG00000003993	SF3B1	99	92.550	ENSGGOG00000009264	SF3B1	99	93.760	Gorilla_gorilla
ENSAPLG00000003993	SF3B1	99	92.939	ENSHBUG00000007705	sf3b1	99	92.939	Haplochromis_burtoni
ENSAPLG00000003993	SF3B1	99	99.078	ENSHGLG00000008285	-	99	99.078	Heterocephalus_glaber_female
ENSAPLG00000003993	SF3B1	99	97.079	ENSHGLG00100005535	-	99	97.079	Heterocephalus_glaber_male
ENSAPLG00000003993	SF3B1	99	92.993	ENSHCOG00000016775	sf3b1	99	93.069	Hippocampus_comes
ENSAPLG00000003993	SF3B1	99	94.100	ENSIPUG00000013171	sf3b1	99	94.100	Ictalurus_punctatus
ENSAPLG00000003993	SF3B1	99	99.382	ENSSTOG00000011034	SF3B1	99	99.382	Ictidomys_tridecemlineatus
ENSAPLG00000003993	SF3B1	99	99.302	ENSJJAG00000010903	Sf3b1	99	99.302	Jaculus_jaculus
ENSAPLG00000003993	SF3B1	99	93.048	ENSKMAG00000004009	sf3b1	99	93.125	Kryptolebias_marmoratus
ENSAPLG00000003993	SF3B1	99	93.610	ENSLBEG00000022208	sf3b1	99	93.610	Labrus_bergylta
ENSAPLG00000003993	SF3B1	99	92.715	ENSLACG00000014832	SF3B1	99	92.715	Latimeria_chalumnae
ENSAPLG00000003993	SF3B1	99	94.878	ENSLOCG00000003899	sf3b1	99	94.878	Lepisosteus_oculatus
ENSAPLG00000003993	SF3B1	99	99.382	ENSLAFG00000001956	SF3B1	99	99.382	Loxodonta_africana
ENSAPLG00000003993	SF3B1	99	99.383	ENSMMUG00000022430	SF3B1	99	99.078	Macaca_mulatta
ENSAPLG00000003993	SF3B1	99	99.382	ENSMNEG00000042333	SF3B1	100	99.741	Macaca_nemestrina
ENSAPLG00000003993	SF3B1	94	93.176	ENSMLEG00000026141	SF3B1	99	93.468	Mandrillus_leucophaeus
ENSAPLG00000003993	SF3B1	99	93.946	ENSMAMG00000010241	sf3b1	99	93.946	Mastacembelus_armatus
ENSAPLG00000003993	SF3B1	99	92.874	ENSMZEG00005021254	sf3b1	99	92.874	Maylandia_zebra
ENSAPLG00000003993	SF3B1	99	99.381	ENSMGAG00000007017	SF3B1	99	99.381	Meleagris_gallopavo
ENSAPLG00000003993	SF3B1	99	94.696	ENSMAUG00000009071	Sf3b1	99	94.850	Mesocricetus_auratus
ENSAPLG00000003993	SF3B1	100	98.696	ENSMICG00000013879	SF3B1	99	99.305	Microcebus_murinus
ENSAPLG00000003993	SF3B1	99	94.773	ENSMOCG00000000455	Sf3b1	100	94.773	Microtus_ochrogaster
ENSAPLG00000003993	SF3B1	83	93.358	ENSMMOG00000000475	sf3b1	99	93.358	Mola_mola
ENSAPLG00000003993	SF3B1	99	98.995	ENSMODG00000012275	SF3B1	99	98.995	Monodelphis_domestica
ENSAPLG00000003993	SF3B1	99	93.870	ENSMALG00000017211	sf3b1	99	93.870	Monopterus_albus
ENSAPLG00000003993	SF3B1	99	99.382	MGP_CAROLIEiJ_G0014141	Sf3b1	99	99.382	Mus_caroli
ENSAPLG00000003993	SF3B1	99	99.382	ENSMUSG00000025982	Sf3b1	99	99.382	Mus_musculus
ENSAPLG00000003993	SF3B1	99	99.382	MGP_SPRETEiJ_G0014947	Sf3b1	99	99.382	Mus_spretus
ENSAPLG00000003993	SF3B1	99	99.382	ENSMPUG00000007799	SF3B1	99	99.382	Mustela_putorius_furo
ENSAPLG00000003993	SF3B1	99	98.147	ENSMLUG00000000840	SF3B1	99	98.147	Myotis_lucifugus
ENSAPLG00000003993	SF3B1	99	99.382	ENSNGAG00000021884	-	99	99.382	Nannospalax_galili
ENSAPLG00000003993	SF3B1	99	89.094	ENSNBRG00000015816	sf3b1	99	89.094	Neolamprologus_brichardi
ENSAPLG00000003993	SF3B1	99	99.382	ENSNLEG00000006861	SF3B1	99	99.382	Nomascus_leucogenys
ENSAPLG00000003993	SF3B1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSAPLG00000003993	SF3B1	99	86.239	ENSOPRG00000008596	SF3B1	99	86.239	Ochotona_princeps
ENSAPLG00000003993	SF3B1	99	99.382	ENSODEG00000011153	-	99	99.382	Octodon_degus
ENSAPLG00000003993	SF3B1	99	92.874	ENSONIG00000013758	sf3b1	99	92.874	Oreochromis_niloticus
ENSAPLG00000003993	SF3B1	83	98.801	ENSOCUG00000012722	-	96	98.801	Oryctolagus_cuniculus
ENSAPLG00000003993	SF3B1	99	93.410	ENSORLG00000020219	sf3b1	99	93.410	Oryzias_latipes
ENSAPLG00000003993	SF3B1	99	93.410	ENSORLG00020001746	sf3b1	99	93.410	Oryzias_latipes_hni
ENSAPLG00000003993	SF3B1	63	91.074	ENSORLG00015001759	sf3b1	97	91.074	Oryzias_latipes_hsok
ENSAPLG00000003993	SF3B1	99	93.568	ENSOMEG00000019231	sf3b1	99	93.568	Oryzias_melastigma
ENSAPLG00000003993	SF3B1	99	99.305	ENSOARG00000015374	SF3B1	99	99.305	Ovis_aries
ENSAPLG00000003993	SF3B1	99	99.382	ENSPPAG00000035007	SF3B1	99	99.382	Pan_paniscus
ENSAPLG00000003993	SF3B1	99	99.382	ENSPPRG00000009090	SF3B1	99	99.382	Panthera_pardus
ENSAPLG00000003993	SF3B1	99	99.382	ENSPTIG00000021557	SF3B1	99	99.382	Panthera_tigris_altaica
ENSAPLG00000003993	SF3B1	99	90.623	ENSPTRG00000012771	SF3B1	99	90.776	Pan_troglodytes
ENSAPLG00000003993	SF3B1	99	99.382	ENSPANG00000013417	SF3B1	99	99.382	Papio_anubis
ENSAPLG00000003993	SF3B1	99	95.015	ENSPKIG00000000784	sf3b1	99	95.015	Paramormyrops_kingsleyae
ENSAPLG00000003993	SF3B1	99	98.224	ENSPSIG00000017222	SF3B1	99	98.224	Pelodiscus_sinensis
ENSAPLG00000003993	SF3B1	90	94.133	ENSPMGG00000004330	sf3b1	98	94.133	Periophthalmus_magnuspinnatus
ENSAPLG00000003993	SF3B1	99	99.382	ENSPEMG00000010699	Sf3b1	100	99.382	Peromyscus_maniculatus_bairdii
ENSAPLG00000003993	SF3B1	99	90.345	ENSPMAG00000001311	sf3b1	99	90.498	Petromyzon_marinus
ENSAPLG00000003993	SF3B1	99	98.918	ENSPCIG00000010642	SF3B1	99	98.918	Phascolarctos_cinereus
ENSAPLG00000003993	SF3B1	99	93.650	ENSPFOG00000000073	sf3b1	99	93.650	Poecilia_formosa
ENSAPLG00000003993	SF3B1	99	93.721	ENSPLAG00000002293	sf3b1	99	93.721	Poecilia_latipinna
ENSAPLG00000003993	SF3B1	99	93.721	ENSPMEG00000000446	sf3b1	97	93.721	Poecilia_mexicana
ENSAPLG00000003993	SF3B1	99	93.798	ENSPREG00000019652	sf3b1	99	93.798	Poecilia_reticulata
ENSAPLG00000003993	SF3B1	99	98.631	ENSPPYG00000013044	SF3B1	96	98.631	Pongo_abelii
ENSAPLG00000003993	SF3B1	99	99.228	ENSPCAG00000009292	SF3B1	99	99.228	Procavia_capensis
ENSAPLG00000003993	SF3B1	99	99.305	ENSPCOG00000024074	SF3B1	99	99.305	Propithecus_coquereli
ENSAPLG00000003993	SF3B1	99	99.382	ENSPVAG00000008302	SF3B1	99	99.382	Pteropus_vampyrus
ENSAPLG00000003993	SF3B1	99	92.874	ENSPNYG00000014939	sf3b1	99	92.874	Pundamilia_nyererei
ENSAPLG00000003993	SF3B1	99	94.028	ENSPNAG00000008288	sf3b1	99	94.104	Pygocentrus_nattereri
ENSAPLG00000003993	SF3B1	99	99.382	ENSRNOG00000013516	Sf3b1	99	99.382	Rattus_norvegicus
ENSAPLG00000003993	SF3B1	99	95.830	ENSRBIG00000026096	SF3B1	99	95.830	Rhinopithecus_bieti
ENSAPLG00000003993	SF3B1	99	99.382	ENSRROG00000031308	SF3B1	99	99.382	Rhinopithecus_roxellana
ENSAPLG00000003993	SF3B1	99	99.382	ENSSBOG00000020080	SF3B1	99	99.382	Saimiri_boliviensis_boliviensis
ENSAPLG00000003993	SF3B1	99	98.995	ENSSHAG00000017564	SF3B1	99	98.995	Sarcophilus_harrisii
ENSAPLG00000003993	SF3B1	99	94.793	ENSSFOG00015021535	sf3b1	99	94.946	Scleropages_formosus
ENSAPLG00000003993	SF3B1	99	92.972	ENSSMAG00000013977	sf3b1	98	93.048	Scophthalmus_maximus
ENSAPLG00000003993	SF3B1	99	93.716	ENSSDUG00000017422	sf3b1	99	93.716	Seriola_dumerili
ENSAPLG00000003993	SF3B1	99	93.640	ENSSLDG00000019495	sf3b1	99	93.640	Seriola_lalandi_dorsalis
ENSAPLG00000003993	SF3B1	76	99.824	ENSSARG00000007016	SF3B1	76	99.824	Sorex_araneus
ENSAPLG00000003993	SF3B1	99	99.381	ENSSPUG00000000410	SF3B1	99	99.381	Sphenodon_punctatus
ENSAPLG00000003993	SF3B1	99	93.870	ENSSPAG00000010451	sf3b1	98	93.870	Stegastes_partitus
ENSAPLG00000003993	SF3B1	90	98.983	ENSSSCG00000016075	SF3B1	100	99.741	Sus_scrofa
ENSAPLG00000003993	SF3B1	99	99.923	ENSTGUG00000010553	SF3B1	99	99.923	Taeniopygia_guttata
ENSAPLG00000003993	SF3B1	99	93.563	ENSTRUG00000015534	sf3b1	99	93.563	Takifugu_rubripes
ENSAPLG00000003993	SF3B1	87	99.690	ENSTBEG00000008714	SF3B1	92	99.690	Tupaia_belangeri
ENSAPLG00000003993	SF3B1	92	94.058	ENSTTRG00000003414	SF3B1	92	94.058	Tursiops_truncatus
ENSAPLG00000003993	SF3B1	94	94.684	ENSUAMG00000018506	SF3B1	99	98.988	Ursus_americanus
ENSAPLG00000003993	SF3B1	99	99.382	ENSUMAG00000020945	SF3B1	99	99.382	Ursus_maritimus
ENSAPLG00000003993	SF3B1	95	97.183	ENSVPAG00000005798	SF3B1	95	97.183	Vicugna_pacos
ENSAPLG00000003993	SF3B1	99	99.382	ENSVVUG00000025948	SF3B1	94	99.382	Vulpes_vulpes
ENSAPLG00000003993	SF3B1	99	96.754	ENSXETG00000013339	sf3b1	99	96.754	Xenopus_tropicalis
ENSAPLG00000003993	SF3B1	99	90.208	ENSXCOG00000018086	sf3b1	99	90.092	Xiphophorus_couchianus
ENSAPLG00000003993	SF3B1	99	93.721	ENSXMAG00000007369	sf3b1	99	93.949	Xiphophorus_maculatus