EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAPLG00000004905 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Plus strand
Length: 30713 bases
Position: chrKB742505.1:739000-769712
Accession: 101794979
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000004481	XRN_N	PF03159.18	3.7e-86	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000005097	XRN1-201	5139	XM_005010857	ENSAPLP00000004481	1713 (aa)	XP_005010914	R0M4X6

Gene Model

Click here to download ENSAPLG00000004905's gene model file

Pathways

Pathway ID	Pathway Name	Source
apla03008	Ribosome biogenesis in eukaryotes	KEGG
apla03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000004905's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000004905	XRN1	100	76.016	ENSG00000114127	XRN1	100	92.727	Homo_sapiens
ENSAPLG00000004905	XRN1	97	69.544	ENSAPOG00000000622	xrn1	93	76.874	Acanthochromis_polyacanthus
ENSAPLG00000004905	XRN1	100	76.273	ENSAMEG00000012538	XRN1	99	76.794	Ailuropoda_melanoleuca
ENSAPLG00000004905	XRN1	93	72.750	ENSACIG00000001057	xrn1	96	72.810	Amphilophus_citrinellus
ENSAPLG00000004905	XRN1	94	70.607	ENSAOCG00000014097	xrn1	97	70.607	Amphiprion_ocellaris
ENSAPLG00000004905	XRN1	100	60.751	ENSAPEG00000006620	xrn1	89	72.104	Amphiprion_percula
ENSAPLG00000004905	XRN1	91	69.628	ENSATEG00000009752	xrn1	97	70.598	Anabas_testudineus
ENSAPLG00000004905	XRN1	100	77.462	ENSACAG00000004985	XRN1	99	77.462	Anolis_carolinensis
ENSAPLG00000004905	XRN1	100	75.900	ENSANAG00000029013	XRN1	97	85.921	Aotus_nancymaae
ENSAPLG00000004905	XRN1	100	60.688	ENSACLG00000004806	xrn1	98	61.054	Astatotilapia_calliptera
ENSAPLG00000004905	XRN1	100	60.692	ENSAMXG00000019370	xrn1	72	96.154	Astyanax_mexicanus
ENSAPLG00000004905	XRN1	100	74.697	ENSBTAG00000011524	XRN1	99	75.159	Bos_taurus
ENSAPLG00000004905	XRN1	68	37.966	WBGene00012730	xrn-1	79	37.074	Caenorhabditis_elegans
ENSAPLG00000004905	XRN1	100	75.549	ENSCJAG00000001872	XRN1	98	77.039	Callithrix_jacchus
ENSAPLG00000004905	XRN1	100	76.682	ENSCAFG00000007783	XRN1	99	77.088	Canis_familiaris
ENSAPLG00000004905	XRN1	100	76.798	ENSCAFG00020009120	XRN1	96	86.161	Canis_lupus_dingo
ENSAPLG00000004905	XRN1	99	76.002	ENSCHIG00000019192	XRN1	98	76.409	Capra_hircus
ENSAPLG00000004905	XRN1	100	76.249	ENSTSYG00000002705	XRN1	99	76.307	Carlito_syrichta
ENSAPLG00000004905	XRN1	100	76.074	ENSCCAG00000034800	XRN1	96	89.238	Cebus_capucinus
ENSAPLG00000004905	XRN1	100	76.365	ENSCATG00000041794	XRN1	99	76.365	Cercocebus_atys
ENSAPLG00000004905	XRN1	100	75.246	ENSCLAG00000001451	XRN1	96	88.742	Chinchilla_lanigera
ENSAPLG00000004905	XRN1	100	75.735	ENSCSAG00000011265	XRN1	99	75.735	Chlorocebus_sabaeus
ENSAPLG00000004905	XRN1	54	97.403	ENSCHOG00000013961	-	57	97.403	Choloepus_hoffmanni
ENSAPLG00000004905	XRN1	68	44.205	ENSCSAVG00000008584	-	96	44.010	Ciona_savignyi
ENSAPLG00000004905	XRN1	100	76.423	ENSCANG00000037495	XRN1	96	89.073	Colobus_angolensis_palliatus
ENSAPLG00000004905	XRN1	100	75.537	ENSCGRG00001019411	Xrn1	96	88.411	Cricetulus_griseus_chok1gshd
ENSAPLG00000004905	XRN1	100	75.537	ENSCGRG00000012464	Xrn1	96	88.411	Cricetulus_griseus_crigri
ENSAPLG00000004905	XRN1	100	56.676	ENSCSEG00000021285	xrn1	95	77.516	Cynoglossus_semilaevis
ENSAPLG00000004905	XRN1	64	72.514	ENSCVAG00000013089	xrn1	97	72.604	Cyprinodon_variegatus
ENSAPLG00000004905	XRN1	100	63.379	ENSDARG00000091652	xrn1	98	80.973	Danio_rerio
ENSAPLG00000004905	XRN1	100	74.435	ENSDORG00000013833	Xrn1	99	75.072	Dipodomys_ordii
ENSAPLG00000004905	XRN1	71	39.676	FBgn0020261	pcm	73	39.433	Drosophila_melanogaster
ENSAPLG00000004905	XRN1	87	90.991	ENSETEG00000003978	XRN1	88	91.935	Echinops_telfairi
ENSAPLG00000004905	XRN1	100	76.590	ENSEASG00005002687	XRN1	96	88.576	Equus_asinus_asinus
ENSAPLG00000004905	XRN1	100	75.331	ENSECAG00000008301	XRN1	99	75.793	Equus_caballus
ENSAPLG00000004905	XRN1	92	74.975	ENSEEUG00000011323	XRN1	91	75.301	Erinaceus_europaeus
ENSAPLG00000004905	XRN1	100	61.460	ENSELUG00000000169	xrn1	99	61.404	Esox_lucius
ENSAPLG00000004905	XRN1	100	71.851	ENSFCAG00000027589	XRN1	93	90.000	Felis_catus
ENSAPLG00000004905	XRN1	100	91.657	ENSFALG00000007021	XRN1	99	91.657	Ficedula_albicollis
ENSAPLG00000004905	XRN1	100	75.203	ENSFDAG00000020494	XRN1	96	88.079	Fukomys_damarensis
ENSAPLG00000004905	XRN1	82	67.542	ENSGMOG00000006396	xrn1	82	68.136	Gadus_morhua
ENSAPLG00000004905	XRN1	100	91.938	ENSGALG00000002706	XRN1	99	91.881	Gallus_gallus
ENSAPLG00000004905	XRN1	100	60.034	ENSGACG00000014328	xrn1	99	60.389	Gasterosteus_aculeatus
ENSAPLG00000004905	XRN1	95	86.892	ENSGAGG00000017535	XRN1	98	86.892	Gopherus_agassizii
ENSAPLG00000004905	XRN1	100	76.307	ENSGGOG00000008047	XRN1	99	76.307	Gorilla_gorilla
ENSAPLG00000004905	XRN1	94	69.992	ENSHBUG00000005908	xrn1	98	73.663	Haplochromis_burtoni
ENSAPLG00000004905	XRN1	100	75.956	ENSHGLG00000014476	XRN1	97	88.742	Heterocephalus_glaber_female
ENSAPLG00000004905	XRN1	100	76.014	ENSHGLG00100015130	XRN1	97	88.742	Heterocephalus_glaber_male
ENSAPLG00000004905	XRN1	95	69.677	ENSHCOG00000014062	xrn1	98	69.758	Hippocampus_comes
ENSAPLG00000004905	XRN1	100	60.980	ENSIPUG00000015229	xrn1	98	61.614	Ictalurus_punctatus
ENSAPLG00000004905	XRN1	100	76.825	ENSSTOG00000013552	XRN1	97	88.742	Ictidomys_tridecemlineatus
ENSAPLG00000004905	XRN1	99	74.811	ENSJJAG00000010863	Xrn1	99	85.968	Jaculus_jaculus
ENSAPLG00000004905	XRN1	100	58.973	ENSKMAG00000021356	xrn1	94	76.221	Kryptolebias_marmoratus
ENSAPLG00000004905	XRN1	100	59.350	ENSLBEG00000018656	xrn1	74	97.436	Labrus_bergylta
ENSAPLG00000004905	XRN1	100	71.933	ENSLACG00000009020	XRN1	99	71.965	Latimeria_chalumnae
ENSAPLG00000004905	XRN1	100	64.868	ENSLOCG00000007944	xrn1	99	64.699	Lepisosteus_oculatus
ENSAPLG00000004905	XRN1	61	85.523	ENSLAFG00000015426	XRN1	98	85.523	Loxodonta_africana
ENSAPLG00000004905	XRN1	100	76.423	ENSMFAG00000032599	XRN1	99	76.423	Macaca_fascicularis
ENSAPLG00000004905	XRN1	100	76.365	ENSMMUG00000014038	XRN1	99	76.365	Macaca_mulatta
ENSAPLG00000004905	XRN1	100	76.190	ENSMNEG00000034217	XRN1	99	76.190	Macaca_nemestrina
ENSAPLG00000004905	XRN1	91	70.008	ENSMAMG00000013219	xrn1	92	78.224	Mastacembelus_armatus
ENSAPLG00000004905	XRN1	100	60.573	ENSMZEG00005015099	xrn1	98	60.939	Maylandia_zebra
ENSAPLG00000004905	XRN1	100	91.720	ENSMGAG00000006333	XRN1	99	91.662	Meleagris_gallopavo
ENSAPLG00000004905	XRN1	100	75.970	ENSMICG00000048948	XRN1	99	76.000	Microcebus_murinus
ENSAPLG00000004905	XRN1	56	88.411	ENSMOCG00000008665	Xrn1	97	88.411	Microtus_ochrogaster
ENSAPLG00000004905	XRN1	100	75.979	ENSMODG00000021236	XRN1	99	76.382	Monodelphis_domestica
ENSAPLG00000004905	XRN1	94	66.614	ENSMALG00000004098	xrn1	97	66.693	Monopterus_albus
ENSAPLG00000004905	XRN1	100	68.910	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSAPLG00000004905	XRN1	100	73.984	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSAPLG00000004905	XRN1	100	74.259	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSAPLG00000004905	XRN1	100	73.868	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSAPLG00000004905	XRN1	100	75.260	ENSMPUG00000012040	XRN1	99	75.721	Mustela_putorius_furo
ENSAPLG00000004905	XRN1	100	75.884	ENSMLUG00000016885	XRN1	99	75.884	Myotis_lucifugus
ENSAPLG00000004905	XRN1	56	82.753	ENSNGAG00000023964	Xrn1	97	84.080	Nannospalax_galili
ENSAPLG00000004905	XRN1	100	76.132	ENSNLEG00000004726	XRN1	99	76.249	Nomascus_leucogenys
ENSAPLG00000004905	XRN1	74	98.611	ENSMEUG00000014473	-	75	98.718	Notamacropus_eugenii
ENSAPLG00000004905	XRN1	78	75.753	ENSOPRG00000007337	-	76	77.258	Ochotona_princeps
ENSAPLG00000004905	XRN1	100	60.686	ENSONIG00000016673	xrn1	98	63.590	Oreochromis_niloticus
ENSAPLG00000004905	XRN1	94	73.840	ENSOANG00000006735	XRN1	100	74.212	Ornithorhynchus_anatinus
ENSAPLG00000004905	XRN1	100	75.965	ENSOCUG00000001861	XRN1	99	76.023	Oryctolagus_cuniculus
ENSAPLG00000004905	XRN1	100	60.604	ENSORLG00000013005	xrn1	97	60.663	Oryzias_latipes
ENSAPLG00000004905	XRN1	95	71.027	ENSORLG00020005559	xrn1	97	70.687	Oryzias_latipes_hni
ENSAPLG00000004905	XRN1	100	60.342	ENSORLG00015022523	xrn1	98	62.835	Oryzias_latipes_hsok
ENSAPLG00000004905	XRN1	91	72.682	ENSOMEG00000015397	xrn1	98	72.682	Oryzias_melastigma
ENSAPLG00000004905	XRN1	100	73.387	ENSOGAG00000000170	XRN1	99	73.545	Otolemur_garnettii
ENSAPLG00000004905	XRN1	99	75.836	ENSOARG00000006343	XRN1	98	76.240	Ovis_aries
ENSAPLG00000004905	XRN1	100	75.768	ENSPPAG00000010180	XRN1	99	76.365	Pan_paniscus
ENSAPLG00000004905	XRN1	100	75.914	ENSPPRG00000007125	XRN1	99	76.378	Panthera_pardus
ENSAPLG00000004905	XRN1	100	75.856	ENSPTIG00000021081	XRN1	99	76.320	Panthera_tigris_altaica
ENSAPLG00000004905	XRN1	100	75.768	ENSPTRG00000015482	XRN1	99	76.365	Pan_troglodytes
ENSAPLG00000004905	XRN1	100	76.307	ENSPANG00000010638	XRN1	99	76.307	Papio_anubis
ENSAPLG00000004905	XRN1	100	85.342	ENSPSIG00000018050	XRN1	99	85.342	Pelodiscus_sinensis
ENSAPLG00000004905	XRN1	55	75.493	ENSPMGG00000002648	xrn1	95	78.571	Periophthalmus_magnuspinnatus
ENSAPLG00000004905	XRN1	56	88.411	ENSPEMG00000020610	Xrn1	96	88.411	Peromyscus_maniculatus_bairdii
ENSAPLG00000004905	XRN1	64	51.648	ENSPMAG00000002975	xrn1	99	49.281	Petromyzon_marinus
ENSAPLG00000004905	XRN1	95	86.240	ENSPCIG00000028735	XRN1	97	89.718	Phascolarctos_cinereus
ENSAPLG00000004905	XRN1	91	63.214	ENSPFOG00000013932	xrn1	97	63.214	Poecilia_formosa
ENSAPLG00000004905	XRN1	91	62.923	ENSPLAG00000021653	xrn1	97	63.277	Poecilia_latipinna
ENSAPLG00000004905	XRN1	89	63.263	ENSPMEG00000003076	xrn1	93	63.712	Poecilia_mexicana
ENSAPLG00000004905	XRN1	100	60.237	ENSPREG00000021147	xrn1	99	60.169	Poecilia_reticulata
ENSAPLG00000004905	XRN1	100	75.504	ENSPPYG00000014172	XRN1	99	75.504	Pongo_abelii
ENSAPLG00000004905	XRN1	84	78.173	ENSPCAG00000005638	XRN1	93	78.173	Procavia_capensis
ENSAPLG00000004905	XRN1	100	75.900	ENSPCOG00000013089	XRN1	96	88.411	Propithecus_coquereli
ENSAPLG00000004905	XRN1	87	82.270	ENSPVAG00000016265	XRN1	90	82.270	Pteropus_vampyrus
ENSAPLG00000004905	XRN1	94	71.004	ENSPNYG00000010570	xrn1	97	71.061	Pundamilia_nyererei
ENSAPLG00000004905	XRN1	100	60.358	ENSPNAG00000023531	xrn1	98	60.554	Pygocentrus_nattereri
ENSAPLG00000004905	XRN1	100	74.753	ENSRNOG00000042951	Xrn1	99	74.985	Rattus_norvegicus
ENSAPLG00000004905	XRN1	100	75.784	ENSRBIG00000041227	XRN1	99	75.784	Rhinopithecus_bieti
ENSAPLG00000004905	XRN1	66	55.556	YGL173C	XRN1	79	33.949	Saccharomyces_cerevisiae
ENSAPLG00000004905	XRN1	100	75.842	ENSSBOG00000029561	XRN1	99	75.842	Saimiri_boliviensis_boliviensis
ENSAPLG00000004905	XRN1	100	77.913	ENSSHAG00000016207	XRN1	100	78.319	Sarcophilus_harrisii
ENSAPLG00000004905	XRN1	100	61.047	ENSSFOG00015024211	xrn1	98	61.337	Scleropages_formosus
ENSAPLG00000004905	XRN1	95	71.816	ENSSMAG00000016534	xrn1	95	71.803	Scophthalmus_maximus
ENSAPLG00000004905	XRN1	88	71.641	ENSSDUG00000010306	xrn1	95	72.135	Seriola_dumerili
ENSAPLG00000004905	XRN1	95	68.352	ENSSLDG00000021543	xrn1	98	68.812	Seriola_lalandi_dorsalis
ENSAPLG00000004905	XRN1	67	78.157	ENSSARG00000007741	-	82	78.157	Sorex_araneus
ENSAPLG00000004905	XRN1	100	93.182	ENSTGUG00000008498	XRN1	99	93.182	Taeniopygia_guttata
ENSAPLG00000004905	XRN1	94	69.505	ENSTRUG00000004895	xrn1	96	77.897	Takifugu_rubripes
ENSAPLG00000004905	XRN1	100	57.574	ENSTNIG00000017615	xrn1	99	57.961	Tetraodon_nigroviridis
ENSAPLG00000004905	XRN1	76	91.618	ENSTBEG00000003256	XRN1	87	79.734	Tupaia_belangeri
ENSAPLG00000004905	XRN1	100	71.412	ENSTTRG00000012914	XRN1	99	71.816	Tursiops_truncatus
ENSAPLG00000004905	XRN1	100	75.130	ENSUAMG00000001608	XRN1	99	81.796	Ursus_americanus
ENSAPLG00000004905	XRN1	100	76.928	ENSUMAG00000013625	XRN1	99	77.391	Ursus_maritimus
ENSAPLG00000004905	XRN1	100	72.187	ENSVPAG00000004690	XRN1	99	72.591	Vicugna_pacos
ENSAPLG00000004905	XRN1	100	76.682	ENSVVUG00000024461	XRN1	99	87.580	Vulpes_vulpes
ENSAPLG00000004905	XRN1	100	67.563	ENSXETG00000000619	xrn1	90	87.608	Xenopus_tropicalis
ENSAPLG00000004905	XRN1	100	60.275	ENSXCOG00000007917	xrn1	98	59.931	Xiphophorus_couchianus
ENSAPLG00000004905	XRN1	90	71.725	ENSXMAG00000018320	xrn1	96	71.973	Xiphophorus_maculatus