EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPLG00000006246 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Minus strand
Length: 38096 bases
Position: chrKB742725.1:597268-635363
Accession: 101798430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000005858	RRM_1	PF00076.22	2.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000006493	PSPC1-201	1499	XM_005014607	ENSAPLP00000005858	404 (aa)	XP_005014664	U3IF36

Gene Model

Click here to download ENSAPLG00000006246's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000006246's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPLG00000006246	PSPC1	100	58.231	ENSAPLG00000003643	SFPQ	72	57.494
ENSAPLG00000006246	PSPC1	100	58.151	ENSAPLG00000002642	NONO	84	59.080

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000006246	PSPC1	100	93.812	ENSG00000121390	PSPC1	77	93.812	Homo_sapiens
ENSAPLG00000006246	PSPC1	100	68.558	ENSAPOG00000015946	pspc1	76	67.943	Acanthochromis_polyacanthus
ENSAPLG00000006246	PSPC1	100	93.812	ENSAMEG00000017420	PSPC1	77	93.812	Ailuropoda_melanoleuca
ENSAPLG00000006246	PSPC1	100	59.420	ENSACIG00000018695	pspc1	75	57.005	Amphilophus_citrinellus
ENSAPLG00000006246	PSPC1	100	67.536	ENSAOCG00000005279	pspc1	77	66.826	Amphiprion_ocellaris
ENSAPLG00000006246	PSPC1	100	68.281	ENSAPEG00000015927	pspc1	76	67.626	Amphiprion_percula
ENSAPLG00000006246	PSPC1	100	54.348	ENSATEG00000004878	pspc1	75	54.831	Anabas_testudineus
ENSAPLG00000006246	PSPC1	100	93.366	ENSACAG00000002093	PSPC1	77	93.612	Anolis_carolinensis
ENSAPLG00000006246	PSPC1	100	53.317	ENSACAG00000013307	-	58	54.300	Anolis_carolinensis
ENSAPLG00000006246	PSPC1	100	93.564	ENSANAG00000000059	PSPC1	77	93.564	Aotus_nancymaae
ENSAPLG00000006246	PSPC1	100	57.389	ENSACLG00000027220	pspc1	75	56.479	Astatotilapia_calliptera
ENSAPLG00000006246	PSPC1	100	71.838	ENSAMXG00000036881	pspc1	77	70.167	Astyanax_mexicanus
ENSAPLG00000006246	PSPC1	100	93.564	ENSBTAG00000003934	PSPC1	78	93.564	Bos_taurus
ENSAPLG00000006246	PSPC1	100	93.812	ENSCJAG00000004554	PSPC1	77	93.812	Callithrix_jacchus
ENSAPLG00000006246	PSPC1	100	93.812	ENSCAFG00020002009	PSPC1	77	93.812	Canis_lupus_dingo
ENSAPLG00000006246	PSPC1	100	93.564	ENSCHIG00000016708	PSPC1	78	93.564	Capra_hircus
ENSAPLG00000006246	PSPC1	99	87.345	ENSTSYG00000032882	PSPC1	88	85.323	Carlito_syrichta
ENSAPLG00000006246	PSPC1	100	92.822	ENSCPOG00000000395	PSPC1	78	92.822	Cavia_porcellus
ENSAPLG00000006246	PSPC1	100	93.564	ENSCCAG00000033498	PSPC1	77	93.564	Cebus_capucinus
ENSAPLG00000006246	PSPC1	100	93.812	ENSCATG00000036434	PSPC1	77	93.812	Cercocebus_atys
ENSAPLG00000006246	PSPC1	99	94.000	ENSCLAG00000005241	PSPC1	89	93.766	Chinchilla_lanigera
ENSAPLG00000006246	PSPC1	100	86.386	ENSCHOG00000008913	PSPC1	77	87.871	Choloepus_hoffmanni
ENSAPLG00000006246	PSPC1	100	98.020	ENSCPBG00000020859	PSPC1	77	98.020	Chrysemys_picta_bellii
ENSAPLG00000006246	PSPC1	65	59.542	ENSCSAVG00000003533	-	50	57.736	Ciona_savignyi
ENSAPLG00000006246	PSPC1	99	81.841	ENSCANG00000018948	PSPC1	87	96.591	Colobus_angolensis_palliatus
ENSAPLG00000006246	PSPC1	100	93.069	ENSCGRG00001018368	Pspc1	77	93.069	Cricetulus_griseus_chok1gshd
ENSAPLG00000006246	PSPC1	100	93.069	ENSCGRG00000011724	Pspc1	77	93.069	Cricetulus_griseus_crigri
ENSAPLG00000006246	PSPC1	100	64.373	ENSCVAG00000007679	-	76	63.107	Cyprinodon_variegatus
ENSAPLG00000006246	PSPC1	100	70.361	ENSDARG00000006621	pspc1	100	69.157	Danio_rerio
ENSAPLG00000006246	PSPC1	100	93.564	ENSDNOG00000011078	PSPC1	77	93.564	Dasypus_novemcinctus
ENSAPLG00000006246	PSPC1	99	94.293	ENSDORG00000016050	Pspc1	78	94.293	Dipodomys_ordii
ENSAPLG00000006246	PSPC1	71	98.020	ENSETEG00000000502	-	72	98.020	Echinops_telfairi
ENSAPLG00000006246	PSPC1	57	47.843	ENSEBUG00000010133	pspc1	58	51.339	Eptatretus_burgeri
ENSAPLG00000006246	PSPC1	100	55.869	ENSEBUG00000003964	-	52	71.080	Eptatretus_burgeri
ENSAPLG00000006246	PSPC1	100	93.812	ENSEASG00005000119	PSPC1	78	93.812	Equus_asinus_asinus
ENSAPLG00000006246	PSPC1	100	93.812	ENSECAG00000017286	PSPC1	78	93.812	Equus_caballus
ENSAPLG00000006246	PSPC1	65	81.967	ENSEEUG00000011288	-	51	81.967	Erinaceus_europaeus
ENSAPLG00000006246	PSPC1	100	71.394	ENSELUG00000003746	pspc1	76	70.883	Esox_lucius
ENSAPLG00000006246	PSPC1	100	94.059	ENSFCAG00000027841	PSPC1	77	94.059	Felis_catus
ENSAPLG00000006246	PSPC1	100	99.010	ENSFALG00000008750	PSPC1	77	99.010	Ficedula_albicollis
ENSAPLG00000006246	PSPC1	100	92.822	ENSFDAG00000002617	PSPC1	79	92.822	Fukomys_damarensis
ENSAPLG00000006246	PSPC1	100	64.548	ENSGMOG00000015074	pspc1	75	63.480	Gadus_morhua
ENSAPLG00000006246	PSPC1	100	98.762	ENSGALG00000017142	PSPC1	77	98.762	Gallus_gallus
ENSAPLG00000006246	PSPC1	65	79.167	ENSGAFG00000006327	pspc1	55	79.167	Gambusia_affinis
ENSAPLG00000006246	PSPC1	99	63.636	ENSGACG00000014901	pspc1	75	72.222	Gasterosteus_aculeatus
ENSAPLG00000006246	PSPC1	100	98.020	ENSGAGG00000019164	PSPC1	77	98.020	Gopherus_agassizii
ENSAPLG00000006246	PSPC1	100	57.740	ENSGAGG00000017325	-	58	56.341	Gopherus_agassizii
ENSAPLG00000006246	PSPC1	100	93.564	ENSGGOG00000003414	PSPC1	77	93.564	Gorilla_gorilla
ENSAPLG00000006246	PSPC1	100	67.971	ENSHBUG00000001139	pspc1	76	67.482	Haplochromis_burtoni
ENSAPLG00000006246	PSPC1	100	92.822	ENSHGLG00000018811	PSPC1	78	92.822	Heterocephalus_glaber_female
ENSAPLG00000006246	PSPC1	57	96.957	ENSHGLG00100007962	PSPC1	70	96.957	Heterocephalus_glaber_male
ENSAPLG00000006246	PSPC1	79	70.552	ENSHCOG00000013251	pspc1	71	68.634	Hippocampus_comes
ENSAPLG00000006246	PSPC1	100	71.014	ENSIPUG00000013192	pspc1	77	70.238	Ictalurus_punctatus
ENSAPLG00000006246	PSPC1	100	93.812	ENSSTOG00000026833	PSPC1	77	93.812	Ictidomys_tridecemlineatus
ENSAPLG00000006246	PSPC1	100	93.069	ENSJJAG00000018334	Pspc1	77	93.069	Jaculus_jaculus
ENSAPLG00000006246	PSPC1	100	51.100	ENSKMAG00000013525	-	71	52.941	Kryptolebias_marmoratus
ENSAPLG00000006246	PSPC1	99	65.796	ENSLBEG00000004474	pspc1	64	72.316	Labrus_bergylta
ENSAPLG00000006246	PSPC1	100	86.881	ENSLACG00000010762	PSPC1	77	86.881	Latimeria_chalumnae
ENSAPLG00000006246	PSPC1	100	84.901	ENSLOCG00000010832	pspc1	79	84.901	Lepisosteus_oculatus
ENSAPLG00000006246	PSPC1	100	93.812	ENSLAFG00000010968	PSPC1	77	93.812	Loxodonta_africana
ENSAPLG00000006246	PSPC1	100	93.812	ENSMFAG00000032728	PSPC1	77	93.812	Macaca_fascicularis
ENSAPLG00000006246	PSPC1	100	93.812	ENSMMUG00000020262	PSPC1	77	93.812	Macaca_mulatta
ENSAPLG00000006246	PSPC1	100	93.812	ENSMNEG00000027401	PSPC1	77	93.812	Macaca_nemestrina
ENSAPLG00000006246	PSPC1	99	94.750	ENSMLEG00000039043	PSPC1	94	94.750	Mandrillus_leucophaeus
ENSAPLG00000006246	PSPC1	100	66.121	ENSMAMG00000004333	pspc1	68	70.400	Mastacembelus_armatus
ENSAPLG00000006246	PSPC1	100	57.389	ENSMZEG00005005726	pspc1	75	56.479	Maylandia_zebra
ENSAPLG00000006246	PSPC1	100	99.752	ENSMGAG00000015134	PSPC1	99	99.752	Meleagris_gallopavo
ENSAPLG00000006246	PSPC1	85	87.172	ENSMAUG00000021067	Pspc1	73	87.172	Mesocricetus_auratus
ENSAPLG00000006246	PSPC1	100	93.564	ENSMICG00000013970	PSPC1	77	93.564	Microcebus_murinus
ENSAPLG00000006246	PSPC1	100	93.564	ENSMOCG00000006060	Pspc1	77	93.564	Microtus_ochrogaster
ENSAPLG00000006246	PSPC1	91	92.623	ENSMODG00000008029	PSPC1	59	92.623	Monodelphis_domestica
ENSAPLG00000006246	PSPC1	100	67.476	ENSMALG00000008914	pspc1	76	66.423	Monopterus_albus
ENSAPLG00000006246	PSPC1	100	93.317	MGP_CAROLIEiJ_G0019341	Pspc1	77	93.317	Mus_caroli
ENSAPLG00000006246	PSPC1	100	93.564	ENSMUSG00000021938	Pspc1	77	93.564	Mus_musculus
ENSAPLG00000006246	PSPC1	100	93.317	MGP_PahariEiJ_G0030359	Pspc1	77	93.317	Mus_pahari
ENSAPLG00000006246	PSPC1	100	93.564	MGP_SPRETEiJ_G0020232	Pspc1	77	93.564	Mus_spretus
ENSAPLG00000006246	PSPC1	100	93.812	ENSMPUG00000013347	PSPC1	77	93.812	Mustela_putorius_furo
ENSAPLG00000006246	PSPC1	100	92.629	ENSMLUG00000017663	PSPC1	77	92.629	Myotis_lucifugus
ENSAPLG00000006246	PSPC1	100	93.317	ENSNGAG00000011271	Pspc1	77	93.317	Nannospalax_galili
ENSAPLG00000006246	PSPC1	66	67.790	ENSNBRG00000014059	pspc1	62	68.914	Neolamprologus_brichardi
ENSAPLG00000006246	PSPC1	100	93.812	ENSNLEG00000001294	PSPC1	77	93.812	Nomascus_leucogenys
ENSAPLG00000006246	PSPC1	80	94.853	ENSMEUG00000000476	PSPC1	61	94.853	Notamacropus_eugenii
ENSAPLG00000006246	PSPC1	100	80.676	ENSODEG00000019012	-	77	82.367	Octodon_degus
ENSAPLG00000006246	PSPC1	100	78.960	ENSODEG00000007817	-	76	78.960	Octodon_degus
ENSAPLG00000006246	PSPC1	100	69.024	ENSONIG00000012010	pspc1	76	66.587	Oreochromis_niloticus
ENSAPLG00000006246	PSPC1	100	66.749	ENSOANG00000011381	-	80	65.517	Ornithorhynchus_anatinus
ENSAPLG00000006246	PSPC1	99	94.000	ENSOANG00000009017	-	100	94.000	Ornithorhynchus_anatinus
ENSAPLG00000006246	PSPC1	100	93.564	ENSOCUG00000006153	PSPC1	77	93.564	Oryctolagus_cuniculus
ENSAPLG00000006246	PSPC1	100	68.460	ENSORLG00000004232	-	75	64.593	Oryzias_latipes
ENSAPLG00000006246	PSPC1	100	68.704	ENSORLG00020000578	PSPC1	75	64.833	Oryzias_latipes_hni
ENSAPLG00000006246	PSPC1	100	68.704	ENSORLG00015017480	pspc1	75	64.593	Oryzias_latipes_hsok
ENSAPLG00000006246	PSPC1	52	83.333	ENSOMEG00000003779	pspc1	95	83.654	Oryzias_melastigma
ENSAPLG00000006246	PSPC1	100	94.059	ENSOGAG00000012643	PSPC1	77	94.059	Otolemur_garnettii
ENSAPLG00000006246	PSPC1	100	93.103	ENSOARG00000014163	PSPC1	84	90.394	Ovis_aries
ENSAPLG00000006246	PSPC1	100	85.891	ENSPPAG00000009836	PSPC1	75	95.506	Pan_paniscus
ENSAPLG00000006246	PSPC1	100	94.059	ENSPPRG00000008833	PSPC1	77	94.059	Panthera_pardus
ENSAPLG00000006246	PSPC1	99	94.776	ENSPTIG00000016917	PSPC1	84	94.776	Panthera_tigris_altaica
ENSAPLG00000006246	PSPC1	91	94.278	ENSPTRG00000005677	PSPC1	75	94.278	Pan_troglodytes
ENSAPLG00000006246	PSPC1	100	93.812	ENSPANG00000001992	PSPC1	77	93.812	Papio_anubis
ENSAPLG00000006246	PSPC1	91	77.174	ENSPKIG00000003578	pspc1	78	72.902	Paramormyrops_kingsleyae
ENSAPLG00000006246	PSPC1	100	96.782	ENSPSIG00000005168	PSPC1	77	96.782	Pelodiscus_sinensis
ENSAPLG00000006246	PSPC1	57	76.190	ENSPMGG00000015135	pspc1	63	76.419	Periophthalmus_magnuspinnatus
ENSAPLG00000006246	PSPC1	100	93.317	ENSPEMG00000015214	Pspc1	77	93.317	Peromyscus_maniculatus_bairdii
ENSAPLG00000006246	PSPC1	50	49.282	ENSPMAG00000004618	pspc1	64	49.282	Petromyzon_marinus
ENSAPLG00000006246	PSPC1	100	92.574	ENSPCIG00000017680	PSPC1	77	92.574	Phascolarctos_cinereus
ENSAPLG00000006246	PSPC1	99	67.726	ENSPFOG00000003362	pspc1	76	66.912	Poecilia_formosa
ENSAPLG00000006246	PSPC1	99	67.726	ENSPLAG00000011540	pspc1	75	66.912	Poecilia_latipinna
ENSAPLG00000006246	PSPC1	99	67.482	ENSPMEG00000008322	pspc1	75	66.667	Poecilia_mexicana
ENSAPLG00000006246	PSPC1	99	67.726	ENSPREG00000007786	pspc1	75	66.912	Poecilia_reticulata
ENSAPLG00000006246	PSPC1	100	93.317	ENSPPYG00000005186	PSPC1	77	93.317	Pongo_abelii
ENSAPLG00000006246	PSPC1	100	88.119	ENSPCOG00000014364	PSPC1	76	88.119	Propithecus_coquereli
ENSAPLG00000006246	PSPC1	100	91.584	ENSPVAG00000005036	PSPC1	78	91.584	Pteropus_vampyrus
ENSAPLG00000006246	PSPC1	100	57.389	ENSPNYG00000008893	pspc1	75	56.479	Pundamilia_nyererei
ENSAPLG00000006246	PSPC1	100	70.773	ENSPNAG00000016511	pspc1	78	71.256	Pygocentrus_nattereri
ENSAPLG00000006246	PSPC1	100	93.069	ENSRNOG00000020782	Pspc1	77	93.069	Rattus_norvegicus
ENSAPLG00000006246	PSPC1	100	93.812	ENSRBIG00000036057	PSPC1	83	93.812	Rhinopithecus_bieti
ENSAPLG00000006246	PSPC1	100	93.812	ENSRROG00000036334	PSPC1	77	93.812	Rhinopithecus_roxellana
ENSAPLG00000006246	PSPC1	99	86.816	ENSSBOG00000028172	PSPC1	87	96.981	Saimiri_boliviensis_boliviensis
ENSAPLG00000006246	PSPC1	100	85.961	ENSSHAG00000004696	PSPC1	77	85.961	Sarcophilus_harrisii
ENSAPLG00000006246	PSPC1	91	77.717	ENSSFOG00015001395	pspc1	87	73.031	Scleropages_formosus
ENSAPLG00000006246	PSPC1	100	65.385	ENSSMAG00000001761	pspc1	68	76.190	Scophthalmus_maximus
ENSAPLG00000006246	PSPC1	100	67.285	ENSSDUG00000010651	pspc1	64	74.176	Seriola_dumerili
ENSAPLG00000006246	PSPC1	100	61.330	ENSSLDG00000004284	pspc1	74	56.398	Seriola_lalandi_dorsalis
ENSAPLG00000006246	PSPC1	100	85.644	ENSSARG00000000888	PSPC1	78	85.644	Sorex_araneus
ENSAPLG00000006246	PSPC1	100	80.988	ENSSPUG00000008550	PSPC1	76	81.481	Sphenodon_punctatus
ENSAPLG00000006246	PSPC1	100	51.707	ENSSPUG00000001136	-	50	53.521	Sphenodon_punctatus
ENSAPLG00000006246	PSPC1	100	66.357	ENSSPAG00000001921	pspc1	64	73.164	Stegastes_partitus
ENSAPLG00000006246	PSPC1	100	93.812	ENSSSCG00000009569	PSPC1	77	93.812	Sus_scrofa
ENSAPLG00000006246	PSPC1	100	99.010	ENSTGUG00000011295	PSPC1	87	99.010	Taeniopygia_guttata
ENSAPLG00000006246	PSPC1	100	62.802	ENSTRUG00000011335	pspc1	76	62.347	Takifugu_rubripes
ENSAPLG00000006246	PSPC1	100	64.303	ENSTNIG00000010358	pspc1	76	62.379	Tetraodon_nigroviridis
ENSAPLG00000006246	PSPC1	99	79.750	ENSTBEG00000002361	PSPC1	77	77.340	Tupaia_belangeri
ENSAPLG00000006246	PSPC1	100	93.812	ENSTTRG00000003343	PSPC1	78	93.812	Tursiops_truncatus
ENSAPLG00000006246	PSPC1	57	96.970	ENSUAMG00000012309	PSPC1	66	96.970	Ursus_americanus
ENSAPLG00000006246	PSPC1	100	93.564	ENSUMAG00000013993	PSPC1	83	93.564	Ursus_maritimus
ENSAPLG00000006246	PSPC1	99	94.750	ENSVPAG00000010029	PSPC1	100	94.750	Vicugna_pacos
ENSAPLG00000006246	PSPC1	100	93.812	ENSVVUG00000006414	PSPC1	77	93.812	Vulpes_vulpes
ENSAPLG00000006246	PSPC1	65	78.030	ENSXCOG00000017438	pspc1	62	78.030	Xiphophorus_couchianus
ENSAPLG00000006246	PSPC1	65	78.409	ENSXMAG00000007929	pspc1	62	78.409	Xiphophorus_maculatus