EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAPLG00000006941 (Gene tree)
Gene ID
-
Gene Symbol
CPSF3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Anas_platyrhynchos
Status
putative
Strand
Plus strand
Length
18066 bases
Position
chrKB742696.1:72698-90763
Accession
101803425
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAPLP00000006610CPSF73-100_CPF11718.81e-5411
ENSAPLP00000006610Beta-CaspPF10996.82.7e-3411
ENSAPLP00000006610Lactamase_BPF00753.276.1e-1911
ENSAPLP00000006610RMMBLPF07521.128.6e-2211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAPLT00000007257CPSF3-2012052XM_005014096ENSAPLP00000006610683 (aa)-U3IH88
Gene Model
Click here to download ENSAPLG00000006941's gene model file
Pathways
Pathway IDPathway NameSource
apla03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000006941's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAPLG00000006941CPSF36640.481ENSAPLG00000005238INTS117440.481
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAPLG00000006941CPSF39895.238ENSG00000119203CPSF3100100.000Homo_sapiens
ENSAPLG00000006941CPSF39885.522ENSAPOG00000022087cpsf39785.522Acanthochromis_polyacanthus
ENSAPLG00000006941CPSF37296.531ENSAPOG00000012241CPSF38996.368Acanthochromis_polyacanthus
ENSAPLG00000006941CPSF39895.685ENSAMEG00000008493CPSF39895.685Ailuropoda_melanoleuca
ENSAPLG00000006941CPSF39286.508ENSACIG00000023663CPSF39986.508Amphilophus_citrinellus
ENSAPLG00000006941CPSF39282.484ENSACIG00000009846cpsf39982.484Amphilophus_citrinellus
ENSAPLG00000006941CPSF39885.373ENSAOCG00000022056cpsf39290.501Amphiprion_ocellaris
ENSAPLG00000006941CPSF39887.779ENSAOCG00000010077CPSF39787.779Amphiprion_ocellaris
ENSAPLG00000006941CPSF39887.779ENSAPEG00000021167CPSF39787.779Amphiprion_percula
ENSAPLG00000006941CPSF39885.522ENSAPEG00000019526cpsf39686.698Amphiprion_percula
ENSAPLG00000006941CPSF39882.712ENSATEG00000014525CPSF39782.712Anabas_testudineus
ENSAPLG00000006941CPSF39885.075ENSATEG00000003959cpsf39983.121Anabas_testudineus
ENSAPLG00000006941CPSF39393.701ENSACAG00000001759CPSF39993.701Anolis_carolinensis
ENSAPLG00000006941CPSF39889.655ENSANAG00000031254CPSF39989.655Aotus_nancymaae
ENSAPLG00000006941CPSF39885.886ENSACLG00000014484cpsf39985.886Astatotilapia_calliptera
ENSAPLG00000006941CPSF39286.508ENSACLG00000018846CPSF39986.508Astatotilapia_calliptera
ENSAPLG00000006941CPSF39887.481ENSAMXG00000004786cpsf39787.481Astyanax_mexicanus
ENSAPLG00000006941CPSF39895.536ENSBTAG00000019735CPSF39895.536Bos_taurus
ENSAPLG00000006941CPSF39258.359WBGene00013460cpsf-39158.359Caenorhabditis_elegans
ENSAPLG00000006941CPSF39895.802ENSCJAG00000006276CPSF39895.802Callithrix_jacchus
ENSAPLG00000006941CPSF39895.685ENSCAFG00000003375CPSF39495.685Canis_familiaris
ENSAPLG00000006941CPSF38997.035ENSCAFG00020026799CPSF39897.035Canis_lupus_dingo
ENSAPLG00000006941CPSF39895.536ENSCHIG00000013973CPSF39895.536Capra_hircus
ENSAPLG00000006941CPSF39895.238ENSTSYG00000002967CPSF39895.238Carlito_syrichta
ENSAPLG00000006941CPSF39894.753ENSCAPG00000013851CPSF310094.753Cavia_aperea
ENSAPLG00000006941CPSF39894.345ENSCPOG00000011299CPSF39894.345Cavia_porcellus
ENSAPLG00000006941CPSF39895.652ENSCCAG00000036730CPSF39995.652Cebus_capucinus
ENSAPLG00000006941CPSF39892.868ENSCATG00000014770CPSF39898.243Cercocebus_atys
ENSAPLG00000006941CPSF39894.196ENSCLAG00000002727CPSF39894.196Chinchilla_lanigera
ENSAPLG00000006941CPSF39887.351ENSCSAG00000007125CPSF39887.351Chlorocebus_sabaeus
ENSAPLG00000006941CPSF387100.000ENSCHOG00000000180CPSF389100.000Choloepus_hoffmanni
ENSAPLG00000006941CPSF39897.466ENSCPBG00000014074CPSF39797.466Chrysemys_picta_bellii
ENSAPLG00000006941CPSF39867.804ENSCING00000007214-9667.804Ciona_intestinalis
ENSAPLG00000006941CPSF39883.482ENSCANG00000034435CPSF39883.482Colobus_angolensis_palliatus
ENSAPLG00000006941CPSF39894.940ENSCGRG00001013134Cpsf39894.940Cricetulus_griseus_chok1gshd
ENSAPLG00000006941CPSF39894.940ENSCGRG00000018319Cpsf39894.940Cricetulus_griseus_crigri
ENSAPLG00000006941CPSF39886.310ENSCSEG00000002021CPSF39986.244Cynoglossus_semilaevis
ENSAPLG00000006941CPSF39887.481ENSCVAG00000015067CPSF39787.481Cyprinodon_variegatus
ENSAPLG00000006941CPSF39888.227ENSDARG00000027649cpsf39788.227Danio_rerio
ENSAPLG00000006941CPSF39893.908ENSDNOG00000008940CPSF39493.908Dasypus_novemcinctus
ENSAPLG00000006941CPSF39496.088ENSDORG00000014263Cpsf39896.088Dipodomys_ordii
ENSAPLG00000006941CPSF39867.115FBgn0261065Cpsf739767.115Drosophila_melanogaster
ENSAPLG00000006941CPSF39086.134ENSETEG00000003893CPSF39486.134Echinops_telfairi
ENSAPLG00000006941CPSF39878.551ENSEBUG00000009018cpsf39778.696Eptatretus_burgeri
ENSAPLG00000006941CPSF39895.685ENSEASG00005003970CPSF39895.685Equus_asinus_asinus
ENSAPLG00000006941CPSF39895.685ENSECAG00000019911CPSF39895.685Equus_caballus
ENSAPLG00000006941CPSF39879.762ENSEEUG00000015422CPSF39879.762Erinaceus_europaeus
ENSAPLG00000006941CPSF39887.761ENSELUG00000013775cpsf39985.987Esox_lucius
ENSAPLG00000006941CPSF39895.536ENSFCAG00000007852CPSF310095.827Felis_catus
ENSAPLG00000006941CPSF39598.454ENSFALG00000006572CPSF310098.454Ficedula_albicollis
ENSAPLG00000006941CPSF39894.179ENSFDAG00000006317CPSF39794.179Fukomys_damarensis
ENSAPLG00000006941CPSF39884.030ENSFHEG00000014774cpsf39784.030Fundulus_heteroclitus
ENSAPLG00000006941CPSF35969.438ENSFHEG00000012186CPSF39969.438Fundulus_heteroclitus
ENSAPLG00000006941CPSF39885.693ENSGMOG00000003157cpsf39785.693Gadus_morhua
ENSAPLG00000006941CPSF39897.024ENSGALG00000016424CPSF39997.323Gallus_gallus
ENSAPLG00000006941CPSF39282.353ENSGAFG00000019449cpsf39982.353Gambusia_affinis
ENSAPLG00000006941CPSF39888.060ENSGAFG00000008016CPSF39788.060Gambusia_affinis
ENSAPLG00000006941CPSF36896.574ENSGAGG00000025583CPSF39396.574Gopherus_agassizii
ENSAPLG00000006941CPSF39893.013ENSGGOG00000001757CPSF310095.591Gorilla_gorilla
ENSAPLG00000006941CPSF39885.672ENSHBUG00000001188cpsf39785.672Haplochromis_burtoni
ENSAPLG00000006941CPSF35980.494ENSHBUG00000014332CPSF39980.494Haplochromis_burtoni
ENSAPLG00000006941CPSF39894.048ENSHGLG00000000666CPSF39794.048Heterocephalus_glaber_female
ENSAPLG00000006941CPSF39894.048ENSHGLG00100007765CPSF39794.048Heterocephalus_glaber_male
ENSAPLG00000006941CPSF39885.970ENSHCOG00000015957CPSF39685.970Hippocampus_comes
ENSAPLG00000006941CPSF39884.799ENSHCOG00000007251cpsf39784.799Hippocampus_comes
ENSAPLG00000006941CPSF39886.438ENSIPUG00000023488cpsf39786.438Ictalurus_punctatus
ENSAPLG00000006941CPSF39895.685ENSSTOG00000004476CPSF39895.685Ictidomys_tridecemlineatus
ENSAPLG00000006941CPSF39894.345ENSJJAG00000023415Cpsf39894.345Jaculus_jaculus
ENSAPLG00000006941CPSF39884.179ENSKMAG00000002806cpsf39784.179Kryptolebias_marmoratus
ENSAPLG00000006941CPSF39887.779ENSKMAG00000007317CPSF39787.779Kryptolebias_marmoratus
ENSAPLG00000006941CPSF39878.806ENSLBEG00000020569cpsf39378.806Labrus_bergylta
ENSAPLG00000006941CPSF39488.106ENSLBEG00000013492CPSF39788.106Labrus_bergylta
ENSAPLG00000006941CPSF35579.088ENSLBEG00000015018-9979.088Labrus_bergylta
ENSAPLG00000006941CPSF39982.206ENSLACG00000008308CPSF39882.206Latimeria_chalumnae
ENSAPLG00000006941CPSF39888.690ENSLOCG00000016823cpsf39788.690Lepisosteus_oculatus
ENSAPLG00000006941CPSF39895.802ENSLAFG00000009467CPSF39895.802Loxodonta_africana
ENSAPLG00000006941CPSF39895.238ENSMFAG00000001339CPSF39995.511Macaca_fascicularis
ENSAPLG00000006941CPSF39595.518ENSMMUG00000018038CPSF310095.518Macaca_mulatta
ENSAPLG00000006941CPSF39884.375ENSMNEG00000039447CPSF39884.375Macaca_nemestrina
ENSAPLG00000006941CPSF39895.387ENSMLEG00000026825CPSF39895.387Mandrillus_leucophaeus
ENSAPLG00000006941CPSF39885.373ENSMAMG00000003076cpsf39785.373Mastacembelus_armatus
ENSAPLG00000006941CPSF39284.968ENSMAMG00000008835CPSF39984.968Mastacembelus_armatus
ENSAPLG00000006941CPSF39888.077ENSMZEG00005006258CPSF39986.508Maylandia_zebra
ENSAPLG00000006941CPSF39885.672ENSMZEG00005014358cpsf39785.672Maylandia_zebra
ENSAPLG00000006941CPSF39897.601ENSMGAG00000013995CPSF310097.601Meleagris_gallopavo
ENSAPLG00000006941CPSF35590.691ENSMAUG00000000166Cpsf310090.691Mesocricetus_auratus
ENSAPLG00000006941CPSF39890.179ENSMICG00000002363CPSF310090.000Microcebus_murinus
ENSAPLG00000006941CPSF39890.923ENSMOCG00000020067Cpsf39890.923Microtus_ochrogaster
ENSAPLG00000006941CPSF37377.857ENSMMOG00000011923CPSF38477.857Mola_mola
ENSAPLG00000006941CPSF39482.016ENSMMOG00000018212CPSF39882.016Mola_mola
ENSAPLG00000006941CPSF39893.814ENSMODG00000014703CPSF39893.814Monodelphis_domestica
ENSAPLG00000006941CPSF39885.373ENSMALG00000016416cpsf39785.373Monopterus_albus
ENSAPLG00000006941CPSF39383.438ENSMALG00000011474CPSF39983.438Monopterus_albus
ENSAPLG00000006941CPSF39894.494MGP_CAROLIEiJ_G0017640Cpsf39894.494Mus_caroli
ENSAPLG00000006941CPSF39894.494ENSMUSG00000054309Cpsf39997.541Mus_musculus
ENSAPLG00000006941CPSF39894.345MGP_PahariEiJ_G0029397Cpsf39894.345Mus_pahari
ENSAPLG00000006941CPSF39894.494MGP_SPRETEiJ_G0018481Cpsf39894.494Mus_spretus
ENSAPLG00000006941CPSF39895.238ENSMPUG00000013213CPSF39895.238Mustela_putorius_furo
ENSAPLG00000006941CPSF39895.097ENSMLUG00000010636CPSF39895.097Myotis_lucifugus
ENSAPLG00000006941CPSF39894.643ENSNGAG00000019836Cpsf39894.643Nannospalax_galili
ENSAPLG00000006941CPSF39885.522ENSNBRG00000004770cpsf39785.522Neolamprologus_brichardi
ENSAPLG00000006941CPSF39286.508ENSNBRG00000010525CPSF39986.508Neolamprologus_brichardi
ENSAPLG00000006941CPSF39895.238ENSNLEG00000013359CPSF310095.518Nomascus_leucogenys
ENSAPLG00000006941CPSF39564.861ENSMEUG00000013117-9464.861Notamacropus_eugenii
ENSAPLG00000006941CPSF39886.310ENSOPRG00000008902CPSF39886.310Ochotona_princeps
ENSAPLG00000006941CPSF39893.899ENSODEG00000003129CPSF39893.899Octodon_degus
ENSAPLG00000006941CPSF39885.821ENSONIG00000018812cpsf39785.821Oreochromis_niloticus
ENSAPLG00000006941CPSF38395.035ENSOANG00000008577CPSF310095.035Ornithorhynchus_anatinus
ENSAPLG00000006941CPSF39895.387ENSOCUG00000003728CPSF39895.387Oryctolagus_cuniculus
ENSAPLG00000006941CPSF39883.134ENSORLG00000018854cpsf39783.134Oryzias_latipes
ENSAPLG00000006941CPSF39883.284ENSORLG00020013331cpsf39783.284Oryzias_latipes_hni
ENSAPLG00000006941CPSF39883.134ENSORLG00015011017cpsf39783.134Oryzias_latipes_hsok
ENSAPLG00000006941CPSF39883.284ENSOMEG00000010647cpsf39383.284Oryzias_melastigma
ENSAPLG00000006941CPSF39885.417ENSOGAG00000001680CPSF39885.417Otolemur_garnettii
ENSAPLG00000006941CPSF39895.536ENSOARG00000015073CPSF39895.536Ovis_aries
ENSAPLG00000006941CPSF39895.387ENSPPAG00000042457CPSF39895.387Pan_paniscus
ENSAPLG00000006941CPSF39895.238ENSPPRG00000016790CPSF310095.518Panthera_pardus
ENSAPLG00000006941CPSF39895.238ENSPTIG00000003920CPSF310095.433Panthera_tigris_altaica
ENSAPLG00000006941CPSF39895.387ENSPTRG00000011638CPSF39895.387Pan_troglodytes
ENSAPLG00000006941CPSF39895.089ENSPANG00000016798CPSF39895.089Papio_anubis
ENSAPLG00000006941CPSF39889.104ENSPKIG00000023646cpsf39989.147Paramormyrops_kingsleyae
ENSAPLG00000006941CPSF39896.852ENSPSIG00000016144CPSF39896.852Pelodiscus_sinensis
ENSAPLG00000006941CPSF35979.259ENSPMGG00000015311CPSF39979.259Periophthalmus_magnuspinnatus
ENSAPLG00000006941CPSF38087.818ENSPMGG00000006141-9587.818Periophthalmus_magnuspinnatus
ENSAPLG00000006941CPSF39894.494ENSPEMG00000017668Cpsf39894.494Peromyscus_maniculatus_bairdii
ENSAPLG00000006941CPSF37790.494ENSPMAG00000004841cpsf39790.494Petromyzon_marinus
ENSAPLG00000006941CPSF39894.792ENSPCIG00000009823CPSF39994.792Phascolarctos_cinereus
ENSAPLG00000006941CPSF39887.612ENSPFOG00000010418-9787.612Poecilia_formosa
ENSAPLG00000006941CPSF39884.054ENSPFOG00000015922cpsf39784.054Poecilia_formosa
ENSAPLG00000006941CPSF35981.436ENSPLAG00000021300-9981.436Poecilia_latipinna
ENSAPLG00000006941CPSF39884.054ENSPLAG00000000882cpsf39784.054Poecilia_latipinna
ENSAPLG00000006941CPSF39884.203ENSPMEG00000018309cpsf39784.203Poecilia_mexicana
ENSAPLG00000006941CPSF39882.687ENSPREG00000004482CPSF39782.687Poecilia_reticulata
ENSAPLG00000006941CPSF39282.194ENSPREG00000014875cpsf39982.194Poecilia_reticulata
ENSAPLG00000006941CPSF39890.774ENSPPYG00000012666CPSF39890.774Pongo_abelii
ENSAPLG00000006941CPSF39063.785ENSPCAG00000015042CPSF39463.785Procavia_capensis
ENSAPLG00000006941CPSF38886.667ENSPCOG00000023016CPSF39886.667Propithecus_coquereli
ENSAPLG00000006941CPSF39895.224ENSPVAG00000005324CPSF39895.224Pteropus_vampyrus
ENSAPLG00000006941CPSF38090.328ENSPNYG00000021047CPSF39190.328Pundamilia_nyererei
ENSAPLG00000006941CPSF39885.672ENSPNYG00000004405cpsf39785.672Pundamilia_nyererei
ENSAPLG00000006941CPSF39887.034ENSPNAG00000023060cpsf39985.215Pygocentrus_nattereri
ENSAPLG00000006941CPSF39894.478ENSRNOG00000052418Cpsf39894.478Rattus_norvegicus
ENSAPLG00000006941CPSF39889.435ENSRBIG00000041615CPSF39991.190Rhinopithecus_bieti
ENSAPLG00000006941CPSF39895.387ENSRROG00000033792CPSF39995.387Rhinopithecus_roxellana
ENSAPLG00000006941CPSF39340.591YLR277CYSH19540.591Saccharomyces_cerevisiae
ENSAPLG00000006941CPSF39891.754ENSSBOG00000027263CPSF39791.754Saimiri_boliviensis_boliviensis
ENSAPLG00000006941CPSF39895.089ENSSHAG00000007024CPSF39895.089Sarcophilus_harrisii
ENSAPLG00000006941CPSF39889.254ENSSFOG00015002108cpsf39989.100Scleropages_formosus
ENSAPLG00000006941CPSF39486.854ENSSMAG00000020534CPSF39486.854Scophthalmus_maximus
ENSAPLG00000006941CPSF39887.630ENSSDUG00000018498CPSF39985.714Seriola_dumerili
ENSAPLG00000006941CPSF39885.672ENSSDUG00000002828cpsf39485.672Seriola_dumerili
ENSAPLG00000006941CPSF39885.672ENSSLDG00000008469cpsf39090.674Seriola_lalandi_dorsalis
ENSAPLG00000006941CPSF39887.630ENSSLDG00000005234CPSF39787.630Seriola_lalandi_dorsalis
ENSAPLG00000006941CPSF39877.976ENSSARG00000005186CPSF39877.976Sorex_araneus
ENSAPLG00000006941CPSF39893.890ENSSPUG00000015525CPSF39793.890Sphenodon_punctatus
ENSAPLG00000006941CPSF39887.332ENSSPAG00000002906CPSF39787.332Stegastes_partitus
ENSAPLG00000006941CPSF39885.821ENSSPAG00000018579cpsf39785.821Stegastes_partitus
ENSAPLG00000006941CPSF39895.529ENSSSCG00000020799CPSF39895.529Sus_scrofa
ENSAPLG00000006941CPSF39897.917ENSTGUG00000013016CPSF39897.917Taeniopygia_guttata
ENSAPLG00000006941CPSF35973.219ENSTRUG00000013905CPSF39973.219Takifugu_rubripes
ENSAPLG00000006941CPSF39885.075ENSTRUG00000007030cpsf39585.075Takifugu_rubripes
ENSAPLG00000006941CPSF38492.635ENSTBEG00000002707CPSF38392.635Tupaia_belangeri
ENSAPLG00000006941CPSF38686.559ENSTTRG00000000861CPSF38686.559Tursiops_truncatus
ENSAPLG00000006941CPSF39496.118ENSUAMG00000007535CPSF39396.118Ursus_americanus
ENSAPLG00000006941CPSF39595.981ENSUMAG00000003676CPSF310095.981Ursus_maritimus
ENSAPLG00000006941CPSF39393.849ENSVPAG00000008041CPSF310093.849Vicugna_pacos
ENSAPLG00000006941CPSF39895.685ENSVVUG00000002194CPSF39895.685Vulpes_vulpes
ENSAPLG00000006941CPSF39890.000ENSXETG00000008263cpsf39790.000Xenopus_tropicalis
ENSAPLG00000006941CPSF35480.054ENSXCOG00000000957-8780.054Xiphophorus_couchianus
ENSAPLG00000006941CPSF39884.352ENSXCOG00000019695cpsf39784.352Xiphophorus_couchianus
ENSAPLG00000006941CPSF39884.054ENSXMAG00000009784cpsf39983.901Xiphophorus_maculatus
ENSAPLG00000006941CPSF39887.910ENSXMAG00000027291CPSF39787.910Xiphophorus_maculatus

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