EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAPLG00000008171 (Gene tree)
Gene ID
-
Gene Symbol
LSM5
Alias
-
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Anas_platyrhynchos
Status
putative
Strand
Plus strand
Length
4193 bases
Position
chrKB742690.1:1006109-1010301
Accession
101801966
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAPLP00000007822LSMPF01423.227e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAPLT00000008487LSM5-201465XM_005013999ENSAPLP0000000782274 (aa)XP_005014056U3IKQ0
Gene Model
Click here to download ENSAPLG00000008171's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000008171's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAPLG00000008171LSM56440.426ENSAPLG00000012792-8740.426
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAPLG00000008171LSM5100100.000ENSG00000106355LSM597100.000Homo_sapiens
ENSAPLG00000008171LSM59197.015ENSAPOG00000011743LSM59796.667Acanthochromis_polyacanthus
ENSAPLG00000008171LSM510097.297ENSAPOG00000020779LSM58297.143Acanthochromis_polyacanthus
ENSAPLG00000008171LSM5100100.000ENSAMEG00000006700LSM581100.000Ailuropoda_melanoleuca
ENSAPLG00000008171LSM55893.023ENSACIG00000019185lsm57793.023Amphilophus_citrinellus
ENSAPLG00000008171LSM510097.297ENSAOCG00000001636lsm58197.297Amphiprion_ocellaris
ENSAPLG00000008171LSM58196.667ENSAPEG00000008201lsm59796.667Amphiprion_percula
ENSAPLG00000008171LSM510097.297ENSAPEG00000008151lsm58197.297Amphiprion_percula
ENSAPLG00000008171LSM59197.015ENSATEG00000020470lsm57393.023Anabas_testudineus
ENSAPLG00000008171LSM555100.000ENSACAG00000009530LSM568100.000Anolis_carolinensis
ENSAPLG00000008171LSM510095.946ENSANAG00000024192-7795.946Aotus_nancymaae
ENSAPLG00000008171LSM58590.476ENSANAG00000037758-7890.476Aotus_nancymaae
ENSAPLG00000008171LSM5100100.000ENSANAG00000034409-81100.000Aotus_nancymaae
ENSAPLG00000008171LSM510097.297ENSACLG00000012891lsm58497.297Astatotilapia_calliptera
ENSAPLG00000008171LSM510081.818ENSAMXG00000035543lsm58281.818Astyanax_mexicanus
ENSAPLG00000008171LSM5100100.000ENSBTAG00000002332LSM581100.000Bos_taurus
ENSAPLG00000008171LSM510077.027WBGene00003079lsm-58177.027Caenorhabditis_elegans
ENSAPLG00000008171LSM5100100.000ENSCJAG00000047379LSM55889.189Callithrix_jacchus
ENSAPLG00000008171LSM510086.486ENSCJAG00000005678-8286.486Callithrix_jacchus
ENSAPLG00000008171LSM510098.649ENSCAFG00000019261-8198.649Canis_familiaris
ENSAPLG00000008171LSM5100100.000ENSCAFG00020004946LSM581100.000Canis_lupus_dingo
ENSAPLG00000008171LSM5100100.000ENSCHIG00000024539LSM581100.000Capra_hircus
ENSAPLG00000008171LSM510097.297ENSCHIG00000004079-8197.297Capra_hircus
ENSAPLG00000008171LSM58076.271ENSCHIG00000021428-7872.603Capra_hircus
ENSAPLG00000008171LSM510068.919ENSTSYG00000036637-7768.919Carlito_syrichta
ENSAPLG00000008171LSM5100100.000ENSTSYG00000006449-81100.000Carlito_syrichta
ENSAPLG00000008171LSM510083.784ENSTSYG00000028728-8083.784Carlito_syrichta
ENSAPLG00000008171LSM58987.879ENSTSYG00000026530-7287.879Carlito_syrichta
ENSAPLG00000008171LSM59991.781ENSCAPG00000006980LSM59791.781Cavia_aperea
ENSAPLG00000008171LSM5100100.000ENSCPOG00000036386LSM581100.000Cavia_porcellus
ENSAPLG00000008171LSM510098.649ENSCCAG00000000821-8198.649Cebus_capucinus
ENSAPLG00000008171LSM5100100.000ENSCCAG00000037808-81100.000Cebus_capucinus
ENSAPLG00000008171LSM510098.649ENSCCAG00000032123-8198.649Cebus_capucinus
ENSAPLG00000008171LSM58978.788ENSCCAG00000037334-8678.788Cebus_capucinus
ENSAPLG00000008171LSM58593.651ENSCCAG00000032792-7893.651Cebus_capucinus
ENSAPLG00000008171LSM59987.671ENSCATG00000014790-7197.561Cercocebus_atys
ENSAPLG00000008171LSM5100100.000ENSCATG00000040218LSM597100.000Cercocebus_atys
ENSAPLG00000008171LSM5100100.000ENSCLAG00000000202LSM581100.000Chinchilla_lanigera
ENSAPLG00000008171LSM510083.784ENSCLAG00000005062-7383.784Chinchilla_lanigera
ENSAPLG00000008171LSM581100.000ENSCHOG00000005335LSM579100.000Choloepus_hoffmanni
ENSAPLG00000008171LSM5100100.000ENSCPBG00000013685LSM581100.000Chrysemys_picta_bellii
ENSAPLG00000008171LSM510090.541ENSCING00000020625-8390.541Ciona_intestinalis
ENSAPLG00000008171LSM510090.541ENSCSAVG00000001439-8490.541Ciona_savignyi
ENSAPLG00000008171LSM5100100.000ENSCANG00000039909LSM597100.000Colobus_angolensis_palliatus
ENSAPLG00000008171LSM5100100.000ENSCGRG00001015461Lsm581100.000Cricetulus_griseus_chok1gshd
ENSAPLG00000008171LSM599100.000ENSCGRG00000007677Lsm597100.000Cricetulus_griseus_crigri
ENSAPLG00000008171LSM55893.023ENSCSEG00000015286lsm57393.023Cynoglossus_semilaevis
ENSAPLG00000008171LSM510097.297ENSCVAG00000004262lsm58397.297Cyprinodon_variegatus
ENSAPLG00000008171LSM510097.297ENSDARG00000071573lsm59796.667Danio_rerio
ENSAPLG00000008171LSM5100100.000ENSDNOG00000034958LSM581100.000Dasypus_novemcinctus
ENSAPLG00000008171LSM59787.500ENSDNOG00000049495-7987.500Dasypus_novemcinctus
ENSAPLG00000008171LSM5100100.000ENSDORG00000009422Lsm581100.000Dipodomys_ordii
ENSAPLG00000008171LSM59788.889FBgn0035675CG66107988.889Drosophila_melanogaster
ENSAPLG00000008171LSM510079.730ENSETEG00000010651-8079.730Echinops_telfairi
ENSAPLG00000008171LSM5100100.000ENSETEG00000018068LSM581100.000Echinops_telfairi
ENSAPLG00000008171LSM59763.889ENSETEG00000000777-7864.384Echinops_telfairi
ENSAPLG00000008171LSM510078.378ENSETEG00000001469-7878.378Echinops_telfairi
ENSAPLG00000008171LSM59780.556ENSETEG00000016074-9580.556Echinops_telfairi
ENSAPLG00000008171LSM510094.595ENSEBUG00000008540lsm58194.595Eptatretus_burgeri
ENSAPLG00000008171LSM5100100.000ENSEASG00005003500LSM581100.000Equus_asinus_asinus
ENSAPLG00000008171LSM510082.432ENSECAG00000018445LSM57982.432Equus_caballus
ENSAPLG00000008171LSM57694.643ENSEEUG00000004102LSM59394.643Erinaceus_europaeus
ENSAPLG00000008171LSM510097.297ENSELUG00000007792lsm58197.297Esox_lucius
ENSAPLG00000008171LSM5100100.000ENSFCAG00000000230LSM581100.000Felis_catus
ENSAPLG00000008171LSM5100100.000ENSFALG00000001892LSM589100.000Ficedula_albicollis
ENSAPLG00000008171LSM5100100.000ENSFDAG00000008767LSM581100.000Fukomys_damarensis
ENSAPLG00000008171LSM510068.919ENSFDAG00000008685-8668.919Fukomys_damarensis
ENSAPLG00000008171LSM510085.135ENSFHEG00000004011lsm58085.135Fundulus_heteroclitus
ENSAPLG00000008171LSM510097.297ENSGMOG00000018235lsm58297.297Gadus_morhua
ENSAPLG00000008171LSM5100100.000ENSGALG00000041625LSM581100.000Gallus_gallus
ENSAPLG00000008171LSM58196.667ENSGAFG00000016824lsm59796.667Gambusia_affinis
ENSAPLG00000008171LSM510097.297ENSGACG00000005528lsm58197.297Gasterosteus_aculeatus
ENSAPLG00000008171LSM5100100.000ENSGAGG00000015593LSM581100.000Gopherus_agassizii
ENSAPLG00000008171LSM5100100.000ENSGGOG00000043469LSM581100.000Gorilla_gorilla
ENSAPLG00000008171LSM510097.297ENSHBUG00000013773lsm58497.297Haplochromis_burtoni
ENSAPLG00000008171LSM5100100.000ENSHGLG00000011765LSM581100.000Heterocephalus_glaber_female
ENSAPLG00000008171LSM599100.000ENSHGLG00100015610LSM582100.000Heterocephalus_glaber_male
ENSAPLG00000008171LSM55890.698ENSHCOG00000008288lsm57390.698Hippocampus_comes
ENSAPLG00000008171LSM510097.297ENSIPUG00000021095LSM58197.297Ictalurus_punctatus
ENSAPLG00000008171LSM510085.135ENSSTOG00000033886-8385.135Ictidomys_tridecemlineatus
ENSAPLG00000008171LSM5100100.000ENSSTOG00000012662LSM581100.000Ictidomys_tridecemlineatus
ENSAPLG00000008171LSM58693.750ENSJJAG00000004475-8193.750Jaculus_jaculus
ENSAPLG00000008171LSM58181.667ENSJJAG00000016144-7281.667Jaculus_jaculus
ENSAPLG00000008171LSM5100100.000ENSJJAG00000012145-81100.000Jaculus_jaculus
ENSAPLG00000008171LSM510095.946ENSKMAG00000021861lsm58195.946Kryptolebias_marmoratus
ENSAPLG00000008171LSM59197.015ENSLBEG00000009235LSM55397.015Labrus_bergylta
ENSAPLG00000008171LSM55580.488ENSLBEG00000017379lsm56780.488Labrus_bergylta
ENSAPLG00000008171LSM510097.297ENSLACG00000022448LSM58197.297Latimeria_chalumnae
ENSAPLG00000008171LSM510097.297ENSLOCG00000012903lsm58197.297Lepisosteus_oculatus
ENSAPLG00000008171LSM5100100.000ENSLAFG00000029579LSM581100.000Loxodonta_africana
ENSAPLG00000008171LSM59972.603ENSLAFG00000027938-7772.603Loxodonta_africana
ENSAPLG00000008171LSM5100100.000ENSMFAG00000038508LSM581100.000Macaca_fascicularis
ENSAPLG00000008171LSM510097.297ENSMFAG00000030152-8197.297Macaca_fascicularis
ENSAPLG00000008171LSM55089.189ENSMMUG00000045129-5889.189Macaca_mulatta
ENSAPLG00000008171LSM510087.838ENSMMUG00000039822-8087.838Macaca_mulatta
ENSAPLG00000008171LSM510097.297ENSMMUG00000030131-8197.297Macaca_mulatta
ENSAPLG00000008171LSM510097.297ENSMNEG00000037935-8197.297Macaca_nemestrina
ENSAPLG00000008171LSM5100100.000ENSMNEG00000015331LSM597100.000Macaca_nemestrina
ENSAPLG00000008171LSM5100100.000ENSMLEG00000024945LSM581100.000Mandrillus_leucophaeus
ENSAPLG00000008171LSM510086.486ENSMLEG00000034037-8186.486Mandrillus_leucophaeus
ENSAPLG00000008171LSM510093.243ENSMAMG00000012869lsm58193.243Mastacembelus_armatus
ENSAPLG00000008171LSM510097.297ENSMZEG00005019554lsm58497.297Maylandia_zebra
ENSAPLG00000008171LSM5100100.000ENSMGAG00000012117LSM581100.000Meleagris_gallopavo
ENSAPLG00000008171LSM5100100.000ENSMAUG00000008132-81100.000Mesocricetus_auratus
ENSAPLG00000008171LSM5100100.000ENSMAUG00000012222Lsm581100.000Mesocricetus_auratus
ENSAPLG00000008171LSM5100100.000ENSMICG00000005353LSM581100.000Microcebus_murinus
ENSAPLG00000008171LSM58588.889ENSMICG00000033928-8288.889Microcebus_murinus
ENSAPLG00000008171LSM5100100.000ENSMOCG00000012018Lsm581100.000Microtus_ochrogaster
ENSAPLG00000008171LSM510097.297ENSMMOG00000004026lsm58597.297Mola_mola
ENSAPLG00000008171LSM581100.000ENSMODG00000013274-97100.000Monodelphis_domestica
ENSAPLG00000008171LSM58193.333ENSMALG00000010343lsm59793.333Monopterus_albus
ENSAPLG00000008171LSM5100100.000MGP_CAROLIEiJ_G0028421Lsm581100.000Mus_caroli
ENSAPLG00000008171LSM5100100.000ENSMUSG00000091625Lsm581100.000Mus_musculus
ENSAPLG00000008171LSM5100100.000MGP_PahariEiJ_G0022171Lsm581100.000Mus_pahari
ENSAPLG00000008171LSM5100100.000MGP_SPRETEiJ_G0029423Lsm581100.000Mus_spretus
ENSAPLG00000008171LSM5100100.000ENSMLUG00000017028LSM581100.000Myotis_lucifugus
ENSAPLG00000008171LSM510075.676ENSNGAG00000022569-7775.676Nannospalax_galili
ENSAPLG00000008171LSM5100100.000ENSNGAG00000024142Lsm581100.000Nannospalax_galili
ENSAPLG00000008171LSM510086.842ENSNGAG00000017707-8086.842Nannospalax_galili
ENSAPLG00000008171LSM57496.364ENSNBRG00000011386lsm57396.364Neolamprologus_brichardi
ENSAPLG00000008171LSM5100100.000ENSNLEG00000015268LSM581100.000Nomascus_leucogenys
ENSAPLG00000008171LSM599100.000ENSOPRG00000002443LSM597100.000Ochotona_princeps
ENSAPLG00000008171LSM5100100.000ENSODEG00000008258-81100.000Octodon_degus
ENSAPLG00000008171LSM5100100.000ENSODEG00000019072-81100.000Octodon_degus
ENSAPLG00000008171LSM59759.722ENSOANG00000014540-9659.722Ornithorhynchus_anatinus
ENSAPLG00000008171LSM5100100.000ENSOCUG00000029043LSM581100.000Oryctolagus_cuniculus
ENSAPLG00000008171LSM510097.297ENSORLG00020003019lsm57797.297Oryzias_latipes_hni
ENSAPLG00000008171LSM510097.297ENSORLG00015003338lsm58197.297Oryzias_latipes_hsok
ENSAPLG00000008171LSM510097.297ENSOMEG00000001078lsm58197.297Oryzias_melastigma
ENSAPLG00000008171LSM5100100.000ENSOGAG00000013892LSM581100.000Otolemur_garnettii
ENSAPLG00000008171LSM5100100.000ENSOARG00000006944LSM581100.000Ovis_aries
ENSAPLG00000008171LSM5100100.000ENSPPAG00000003697-81100.000Pan_paniscus
ENSAPLG00000008171LSM5100100.000ENSPPRG00000002550LSM581100.000Panthera_pardus
ENSAPLG00000008171LSM5100100.000ENSPTIG00000015604LSM581100.000Panthera_tigris_altaica
ENSAPLG00000008171LSM5100100.000ENSPTRG00000019057LSM581100.000Pan_troglodytes
ENSAPLG00000008171LSM510079.730ENSPTRG00000049488-8082.432Pan_troglodytes
ENSAPLG00000008171LSM510097.297ENSPANG00000033477-8197.297Papio_anubis
ENSAPLG00000008171LSM5100100.000ENSPANG00000032179-81100.000Papio_anubis
ENSAPLG00000008171LSM510087.838ENSPANG00000032538-8087.838Papio_anubis
ENSAPLG00000008171LSM510097.297ENSPKIG00000011910lsm58197.297Paramormyrops_kingsleyae
ENSAPLG00000008171LSM5100100.000ENSPSIG00000014796LSM5100100.000Pelodiscus_sinensis
ENSAPLG00000008171LSM58196.667ENSPMGG00000011699lsm59796.667Periophthalmus_magnuspinnatus
ENSAPLG00000008171LSM510072.973ENSPEMG00000022375-7972.973Peromyscus_maniculatus_bairdii
ENSAPLG00000008171LSM510097.297ENSPFOG00000001433lsm58197.297Poecilia_formosa
ENSAPLG00000008171LSM510097.297ENSPLAG00000009665lsm58197.297Poecilia_latipinna
ENSAPLG00000008171LSM510097.297ENSPMEG00000022265lsm58197.297Poecilia_mexicana
ENSAPLG00000008171LSM58196.667ENSPREG00000022452lsm59796.667Poecilia_reticulata
ENSAPLG00000008171LSM510095.946ENSPPYG00000017661LSM58195.946Pongo_abelii
ENSAPLG00000008171LSM589100.000ENSPCAG00000013740LSM581100.000Procavia_capensis
ENSAPLG00000008171LSM5100100.000ENSPVAG00000009786LSM581100.000Pteropus_vampyrus
ENSAPLG00000008171LSM510097.297ENSPNYG00000022236lsm58497.297Pundamilia_nyererei
ENSAPLG00000008171LSM510097.297ENSPNAG00000001887lsm58197.297Pygocentrus_nattereri
ENSAPLG00000008171LSM510097.333ENSRNOG00000027305AABR07065089.18297.333Rattus_norvegicus
ENSAPLG00000008171LSM5100100.000ENSRNOG00000042126Lsm581100.000Rattus_norvegicus
ENSAPLG00000008171LSM5100100.000ENSRBIG00000030714-81100.000Rhinopithecus_bieti
ENSAPLG00000008171LSM510098.649ENSRBIG00000024431-8198.649Rhinopithecus_bieti
ENSAPLG00000008171LSM5100100.000ENSRBIG00000030340-81100.000Rhinopithecus_bieti
ENSAPLG00000008171LSM5100100.000ENSRBIG00000027803-97100.000Rhinopithecus_bieti
ENSAPLG00000008171LSM5100100.000ENSRROG00000023884-81100.000Rhinopithecus_roxellana
ENSAPLG00000008171LSM5100100.000ENSRROG00000042782-97100.000Rhinopithecus_roxellana
ENSAPLG00000008171LSM5100100.000ENSRROG00000004655-81100.000Rhinopithecus_roxellana
ENSAPLG00000008171LSM59750.649YER146W-8350.649Saccharomyces_cerevisiae
ENSAPLG00000008171LSM58588.889ENSSBOG00000034794-7888.889Saimiri_boliviensis_boliviensis
ENSAPLG00000008171LSM5100100.000ENSSBOG00000012312LSM581100.000Saimiri_boliviensis_boliviensis
ENSAPLG00000008171LSM599100.000ENSSBOG00000019124-80100.000Saimiri_boliviensis_boliviensis
ENSAPLG00000008171LSM510097.297ENSSFOG00015010099lsm58197.297Scleropages_formosus
ENSAPLG00000008171LSM55893.023ENSSMAG00000007895lsm57393.023Scophthalmus_maximus
ENSAPLG00000008171LSM58196.667ENSSDUG00000010762lsm59796.667Seriola_dumerili
ENSAPLG00000008171LSM510097.297ENSSLDG00000025242lsm58197.297Seriola_lalandi_dorsalis
ENSAPLG00000008171LSM59779.167ENSSLDG00000008014-8679.167Seriola_lalandi_dorsalis
ENSAPLG00000008171LSM510066.216ENSSARG00000003330LSM58166.216Sorex_araneus
ENSAPLG00000008171LSM510098.649ENSSPUG00000002690LSM59798.333Sphenodon_punctatus
ENSAPLG00000008171LSM55893.023ENSSPAG00000005435lsm57393.023Stegastes_partitus
ENSAPLG00000008171LSM56990.196ENSSSCG00000029661-7588.889Sus_scrofa
ENSAPLG00000008171LSM5100100.000ENSSSCG00000026064-81100.000Sus_scrofa
ENSAPLG00000008171LSM5100100.000ENSTGUG00000017539LSM581100.000Taeniopygia_guttata
ENSAPLG00000008171LSM59187.500ENSTRUG00000017749lsm55687.500Takifugu_rubripes
ENSAPLG00000008171LSM510095.946ENSTNIG00000008695lsm58495.946Tetraodon_nigroviridis
ENSAPLG00000008171LSM5100100.000ENSTBEG00000004876LSM581100.000Tupaia_belangeri
ENSAPLG00000008171LSM5100100.000ENSTTRG00000004237LSM581100.000Tursiops_truncatus
ENSAPLG00000008171LSM5100100.000ENSUMAG00000002625LSM553100.000Ursus_maritimus
ENSAPLG00000008171LSM5100100.000ENSVPAG00000009985LSM581100.000Vicugna_pacos
ENSAPLG00000008171LSM5100100.000ENSVVUG00000021311LSM581100.000Vulpes_vulpes
ENSAPLG00000008171LSM59198.507ENSXETG00000026465lsm58298.507Xenopus_tropicalis
ENSAPLG00000008171LSM58196.667ENSXCOG00000015348lsm59796.667Xiphophorus_couchianus
ENSAPLG00000008171LSM510097.297ENSXMAG00000029988lsm58197.297Xiphophorus_maculatus

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