EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPLG00000008415 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Minus strand
Length: 8548 bases
Position: chrKB742845.1:267997-276544
Accession: 101790139
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000008101	PABP	PF00658.18	3.4e-29	1	1
ENSAPLP00000008101	RRM_1	PF00076.22	1.3e-87	1	4
ENSAPLP00000008101	RRM_1	PF00076.22	1.3e-87	2	4
ENSAPLP00000008101	RRM_1	PF00076.22	1.3e-87	3	4
ENSAPLP00000008101	RRM_1	PF00076.22	1.3e-87	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000008772	PABPC1L-201	1860	XM_005016409	ENSAPLP00000008101	620 (aa)	-	U3ILH9

Gene Model

Click here to download ENSAPLG00000008415's gene model file

Pathways

Pathway ID	Pathway Name	Source
apla03013	RNA transport	KEGG
apla03015	mRNA surveillance pathway	KEGG
apla03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000008415's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPLG00000008415	PABPC1L	50	36.047	ENSAPLG00000008482	CELF1	63	36.047
ENSAPLG00000008415	PABPC1L	52	34.884	ENSAPLG00000010064	CELF2	64	34.884
ENSAPLG00000008415	PABPC1L	56	40.000	ENSAPLG00000001216	SF3B4	99	40.000
ENSAPLG00000008415	PABPC1L	50	40.845	ENSAPLG00000010149	HNRNPM	52	40.845
ENSAPLG00000008415	PABPC1L	99	70.016	ENSAPLG00000009729	-	98	70.144
ENSAPLG00000008415	PABPC1L	61	34.940	ENSAPLG00000010429	ELAVL2	100	34.940
ENSAPLG00000008415	PABPC1L	58	30.380	ENSAPLG00000009953	TIA1	75	30.380
ENSAPLG00000008415	PABPC1L	58	30.114	ENSAPLG00000009088	TIAL1	78	30.114
ENSAPLG00000008415	PABPC1L	99	70.870	ENSAPLG00000001129	PABPC1	98	70.870

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000008415	PABPC1L	98	74.677	ENSG00000101104	PABPC1L	95	80.635	Homo_sapiens
ENSAPLG00000008415	PABPC1L	99	68.539	ENSAPOG00000010842	pabpc1l	98	68.387	Acanthochromis_polyacanthus
ENSAPLG00000008415	PABPC1L	99	68.692	ENSAMEG00000004099	PABPC1L	99	68.711	Ailuropoda_melanoleuca
ENSAPLG00000008415	PABPC1L	99	78.049	ENSACIG00000021004	-	99	76.596	Amphilophus_citrinellus
ENSAPLG00000008415	PABPC1L	99	68.289	ENSAOCG00000006167	-	98	69.144	Amphiprion_ocellaris
ENSAPLG00000008415	PABPC1L	99	75.779	ENSAPEG00000010558	-	95	82.353	Amphiprion_percula
ENSAPLG00000008415	PABPC1L	99	70.813	ENSATEG00000007428	pabpc1l	98	71.014	Anabas_testudineus
ENSAPLG00000008415	PABPC1L	99	82.428	ENSACAG00000011841	PABPC1L	97	82.581	Anolis_carolinensis
ENSAPLG00000008415	PABPC1L	98	73.387	ENSANAG00000026826	PABPC1L	98	73.301	Aotus_nancymaae
ENSAPLG00000008415	PABPC1L	99	71.791	ENSACLG00000024791	pabpc1l	98	71.840	Astatotilapia_calliptera
ENSAPLG00000008415	PABPC1L	99	72.943	ENSAMXG00000013552	pabpc1l	98	73.003	Astyanax_mexicanus
ENSAPLG00000008415	PABPC1L	65	75.510	ENSBTAG00000016849	PABPC1L	74	75.510	Bos_taurus
ENSAPLG00000008415	PABPC1L	58	88.024	ENSBTAG00000055300	-	96	89.937	Bos_taurus
ENSAPLG00000008415	PABPC1L	98	74.032	ENSCJAG00000017628	PABPC1L	98	73.948	Callithrix_jacchus
ENSAPLG00000008415	PABPC1L	58	78.613	ENSCJAG00000038506	-	95	79.394	Callithrix_jacchus
ENSAPLG00000008415	PABPC1L	99	68.413	ENSCAFG00000009573	PABPC1L	99	68.585	Canis_familiaris
ENSAPLG00000008415	PABPC1L	99	74.230	ENSCAFG00020013828	PABPC1L	97	74.468	Canis_lupus_dingo
ENSAPLG00000008415	PABPC1L	97	72.862	ENSCHIG00000025759	PABPC1L	90	72.924	Capra_hircus
ENSAPLG00000008415	PABPC1L	98	72.581	ENSTSYG00000006645	PABPC1L	98	72.492	Carlito_syrichta
ENSAPLG00000008415	PABPC1L	98	68.941	ENSCAPG00000014519	PABPC1L	99	68.941	Cavia_aperea
ENSAPLG00000008415	PABPC1L	98	71.820	ENSCPOG00000013633	PABPC1L	98	71.729	Cavia_porcellus
ENSAPLG00000008415	PABPC1L	98	73.871	ENSCCAG00000023338	PABPC1L	97	73.786	Cebus_capucinus
ENSAPLG00000008415	PABPC1L	98	74.355	ENSCATG00000034065	PABPC1L	97	74.272	Cercocebus_atys
ENSAPLG00000008415	PABPC1L	98	71.498	ENSCLAG00000005298	PABPC1L	98	71.567	Chinchilla_lanigera
ENSAPLG00000008415	PABPC1L	98	74.355	ENSCSAG00000014242	PABPC1L	97	74.272	Chlorocebus_sabaeus
ENSAPLG00000008415	PABPC1L	70	94.318	ENSCPBG00000017755	-	98	94.700	Chrysemys_picta_bellii
ENSAPLG00000008415	PABPC1L	60	79.861	ENSCPBG00000007810	-	87	79.861	Chrysemys_picta_bellii
ENSAPLG00000008415	PABPC1L	97	51.919	ENSCING00000002796	-	97	50.100	Ciona_intestinalis
ENSAPLG00000008415	PABPC1L	99	55.418	ENSCSAVG00000003102	-	100	80.537	Ciona_savignyi
ENSAPLG00000008415	PABPC1L	84	78.824	ENSCSAVG00000004246	-	90	78.824	Ciona_savignyi
ENSAPLG00000008415	PABPC1L	98	70.418	ENSCANG00000037530	PABPC1L	97	70.323	Colobus_angolensis_palliatus
ENSAPLG00000008415	PABPC1L	99	66.193	ENSCGRG00001021938	Pabpc1l	98	66.453	Cricetulus_griseus_chok1gshd
ENSAPLG00000008415	PABPC1L	99	66.193	ENSCGRG00000007946	Pabpc1l	98	66.453	Cricetulus_griseus_crigri
ENSAPLG00000008415	PABPC1L	99	65.640	ENSCSEG00000021295	pabpc1l	98	65.528	Cynoglossus_semilaevis
ENSAPLG00000008415	PABPC1L	99	71.360	ENSCVAG00000015943	-	98	71.405	Cyprinodon_variegatus
ENSAPLG00000008415	PABPC1L	99	72.640	ENSDARG00000002597	pabpc1l	86	89.256	Danio_rerio
ENSAPLG00000008415	PABPC1L	98	77.199	ENSDNOG00000048450	PABPC1L	98	77.124	Dasypus_novemcinctus
ENSAPLG00000008415	PABPC1L	98	71.845	ENSDORG00000001067	Pabpc1l	98	71.753	Dipodomys_ordii
ENSAPLG00000008415	PABPC1L	94	81.743	ENSETEG00000009969	PABPC1L	70	81.857	Echinops_telfairi
ENSAPLG00000008415	PABPC1L	58	86.826	ENSEASG00005023408	-	100	89.308	Equus_asinus_asinus
ENSAPLG00000008415	PABPC1L	64	83.230	ENSEASG00005023407	-	65	83.230	Equus_asinus_asinus
ENSAPLG00000008415	PABPC1L	69	77.632	ENSECAG00000040139	-	81	77.632	Equus_caballus
ENSAPLG00000008415	PABPC1L	99	71.337	ENSEEUG00000005978	PABPC1L	98	71.452	Erinaceus_europaeus
ENSAPLG00000008415	PABPC1L	99	79.310	ENSELUG00000001811	pabpc1l	98	80.094	Esox_lucius
ENSAPLG00000008415	PABPC1L	99	74.152	ENSFCAG00000011692	PABPC1L	98	74.225	Felis_catus
ENSAPLG00000008415	PABPC1L	80	91.716	ENSFALG00000005372	PABPC1L	96	82.982	Ficedula_albicollis
ENSAPLG00000008415	PABPC1L	98	70.521	ENSFDAG00000008291	PABPC1L	98	70.261	Fukomys_damarensis
ENSAPLG00000008415	PABPC1L	99	71.268	ENSFHEG00000003398	pabpc1l	98	71.313	Fundulus_heteroclitus
ENSAPLG00000008415	PABPC1L	99	72.303	ENSGMOG00000004437	pabpc1l	97	72.285	Gadus_morhua
ENSAPLG00000008415	PABPC1L	99	94.976	ENSGALG00000004123	PABPC1L	98	94.976	Gallus_gallus
ENSAPLG00000008415	PABPC1L	99	68.134	ENSGAFG00000021057	pabpc1l	99	68.147	Gambusia_affinis
ENSAPLG00000008415	PABPC1L	99	69.537	ENSGACG00000002792	pabpc1l	99	69.565	Gasterosteus_aculeatus
ENSAPLG00000008415	PABPC1L	99	88.889	ENSGAGG00000000589	PABPC1L	97	89.195	Gopherus_agassizii
ENSAPLG00000008415	PABPC1L	98	74.516	ENSGGOG00000004584	PABPC1L	97	74.434	Gorilla_gorilla
ENSAPLG00000008415	PABPC1L	99	71.791	ENSHBUG00000006134	pabpc1l	98	71.840	Haplochromis_burtoni
ENSAPLG00000008415	PABPC1L	98	71.729	ENSHGLG00000008434	PABPC1L	98	71.637	Heterocephalus_glaber_female
ENSAPLG00000008415	PABPC1L	57	84.746	ENSHGLG00100019506	-	95	85.799	Heterocephalus_glaber_male
ENSAPLG00000008415	PABPC1L	98	71.729	ENSHGLG00100012151	PABPC1L	98	71.637	Heterocephalus_glaber_male
ENSAPLG00000008415	PABPC1L	99	69.752	ENSHCOG00000009270	pabpc1l	99	69.294	Hippocampus_comes
ENSAPLG00000008415	PABPC1L	58	62.644	ENSIPUG00000006780	-	85	62.644	Ictalurus_punctatus
ENSAPLG00000008415	PABPC1L	58	62.069	ENSIPUG00000006760	-	88	62.069	Ictalurus_punctatus
ENSAPLG00000008415	PABPC1L	99	75.159	ENSIPUG00000012602	pabpc1l	98	75.241	Ictalurus_punctatus
ENSAPLG00000008415	PABPC1L	98	72.419	ENSSTOG00000003739	PABPC1L	98	72.330	Ictidomys_tridecemlineatus
ENSAPLG00000008415	PABPC1L	98	58.407	ENSJJAG00000022406	Pabpc1l	99	57.258	Jaculus_jaculus
ENSAPLG00000008415	PABPC1L	99	70.880	ENSKMAG00000016847	pabpc1l	99	70.921	Kryptolebias_marmoratus
ENSAPLG00000008415	PABPC1L	99	70.223	ENSLBEG00000010084	pabpc1l	98	70.128	Labrus_bergylta
ENSAPLG00000008415	PABPC1L	99	74.922	ENSLACG00000005762	PABPC1L	97	77.903	Latimeria_chalumnae
ENSAPLG00000008415	PABPC1L	99	75.917	ENSLOCG00000007519	pabpc1l	97	76.006	Lepisosteus_oculatus
ENSAPLG00000008415	PABPC1L	99	71.835	ENSLAFG00000003553	PABPC1L	99	71.885	Loxodonta_africana
ENSAPLG00000008415	PABPC1L	98	74.677	ENSMFAG00000040365	PABPC1L	97	74.595	Macaca_fascicularis
ENSAPLG00000008415	PABPC1L	98	72.816	ENSMNEG00000032298	PABPC1L	97	72.727	Macaca_nemestrina
ENSAPLG00000008415	PABPC1L	98	74.355	ENSMLEG00000043139	PABPC1L	97	74.272	Mandrillus_leucophaeus
ENSAPLG00000008415	PABPC1L	96	71.240	ENSMAMG00000011854	pabpc1l	96	71.215	Mastacembelus_armatus
ENSAPLG00000008415	PABPC1L	99	71.791	ENSMZEG00005023713	pabpc1l	98	71.840	Maylandia_zebra
ENSAPLG00000008415	PABPC1L	99	89.694	ENSMGAG00000003674	PABPC1L	97	89.919	Meleagris_gallopavo
ENSAPLG00000008415	PABPC1L	99	64.537	ENSMOCG00000013186	Pabpc1l	98	64.943	Microtus_ochrogaster
ENSAPLG00000008415	PABPC1L	99	70.787	ENSMMOG00000020574	-	85	89.256	Mola_mola
ENSAPLG00000008415	PABPC1L	97	76.847	ENSMODG00000016198	PABPC1L	98	76.949	Monodelphis_domestica
ENSAPLG00000008415	PABPC1L	97	70.261	ENSMALG00000021622	pabpc1l	99	70.462	Monopterus_albus
ENSAPLG00000008415	PABPC1L	99	66.613	MGP_CAROLIEiJ_G0024627	Pabpc1l	98	66.613	Mus_caroli
ENSAPLG00000008415	PABPC1L	99	66.613	ENSMUSG00000054582	Pabpc1l	98	66.613	Mus_musculus
ENSAPLG00000008415	PABPC1L	99	67.097	MGP_PahariEiJ_G0026071	Pabpc1l	98	67.097	Mus_pahari
ENSAPLG00000008415	PABPC1L	99	66.613	MGP_SPRETEiJ_G0025549	Pabpc1l	98	66.613	Mus_spretus
ENSAPLG00000008415	PABPC1L	99	73.684	ENSMPUG00000017646	PABPC1L	98	73.752	Mustela_putorius_furo
ENSAPLG00000008415	PABPC1L	98	68.949	ENSMLUG00000006324	PABPC1L	96	69.132	Myotis_lucifugus
ENSAPLG00000008415	PABPC1L	98	67.042	ENSNGAG00000010458	Pabpc1l	99	67.042	Nannospalax_galili
ENSAPLG00000008415	PABPC1L	99	78.177	ENSNBRG00000016633	pabpc1l	99	78.177	Neolamprologus_brichardi
ENSAPLG00000008415	PABPC1L	89	71.685	ENSMEUG00000007905	-	88	71.739	Notamacropus_eugenii
ENSAPLG00000008415	PABPC1L	99	73.096	ENSOPRG00000011846	PABPC1L	97	73.083	Ochotona_princeps
ENSAPLG00000008415	PABPC1L	98	65.472	ENSODEG00000015482	PABPC1L	97	65.359	Octodon_degus
ENSAPLG00000008415	PABPC1L	57	77.987	ENSODEG00000002920	-	91	78.808	Octodon_degus
ENSAPLG00000008415	PABPC1L	99	71.791	ENSONIG00000017314	pabpc1l	98	71.840	Oreochromis_niloticus
ENSAPLG00000008415	PABPC1L	89	67.800	ENSOANG00000015793	-	98	67.684	Ornithorhynchus_anatinus
ENSAPLG00000008415	PABPC1L	98	69.829	ENSOCUG00000003005	PABPC1L	99	69.735	Oryctolagus_cuniculus
ENSAPLG00000008415	PABPC1L	99	70.048	ENSORLG00000010322	pabpc1l	99	76.102	Oryzias_latipes
ENSAPLG00000008415	PABPC1L	99	70.531	ENSORLG00020021193	pabpc1l	99	76.102	Oryzias_latipes_hni
ENSAPLG00000008415	PABPC1L	99	69.887	ENSORLG00015017018	pabpc1l	99	76.102	Oryzias_latipes_hsok
ENSAPLG00000008415	PABPC1L	99	66.971	ENSOMEG00000010789	pabpc1l	98	66.974	Oryzias_melastigma
ENSAPLG00000008415	PABPC1L	99	73.194	ENSOGAG00000032999	PABPC1L	98	73.108	Otolemur_garnettii
ENSAPLG00000008415	PABPC1L	99	73.548	ENSOARG00000004578	PABPC1L	97	73.616	Ovis_aries
ENSAPLG00000008415	PABPC1L	98	74.839	ENSPPAG00000039677	PABPC1L	97	74.757	Pan_paniscus
ENSAPLG00000008415	PABPC1L	61	70.588	ENSPPRG00000019327	-	95	71.111	Panthera_pardus
ENSAPLG00000008415	PABPC1L	99	74.146	ENSPTIG00000006524	PABPC1L	99	74.225	Panthera_tigris_altaica
ENSAPLG00000008415	PABPC1L	61	79.876	ENSPTRG00000013531	PABPC1L	95	80.952	Pan_troglodytes
ENSAPLG00000008415	PABPC1L	98	74.355	ENSPANG00000018788	PABPC1L	97	74.272	Papio_anubis
ENSAPLG00000008415	PABPC1L	52	81.538	ENSPKIG00000016810	-	88	83.607	Paramormyrops_kingsleyae
ENSAPLG00000008415	PABPC1L	99	74.718	ENSPKIG00000007322	pabpc1l	98	74.637	Paramormyrops_kingsleyae
ENSAPLG00000008415	PABPC1L	66	92.308	ENSPSIG00000013289	PABPC1L	97	93.137	Pelodiscus_sinensis
ENSAPLG00000008415	PABPC1L	70	69.802	ENSPMGG00000023121	-	93	69.802	Periophthalmus_magnuspinnatus
ENSAPLG00000008415	PABPC1L	61	86.047	ENSPMGG00000023117	pabpc1l	93	83.010	Periophthalmus_magnuspinnatus
ENSAPLG00000008415	PABPC1L	99	64.960	ENSPEMG00000020671	Pabpc1l	98	65.595	Peromyscus_maniculatus_bairdii
ENSAPLG00000008415	PABPC1L	99	72.089	ENSPFOG00000013241	pabpc1l	98	72.142	Poecilia_formosa
ENSAPLG00000008415	PABPC1L	99	71.930	ENSPLAG00000017490	-	98	71.981	Poecilia_latipinna
ENSAPLG00000008415	PABPC1L	51	88.976	ENSPLAG00000023686	-	87	90.083	Poecilia_latipinna
ENSAPLG00000008415	PABPC1L	99	71.611	ENSPMEG00000007677	pabpc1l	98	71.659	Poecilia_mexicana
ENSAPLG00000008415	PABPC1L	51	88.976	ENSPMEG00000009185	-	84	90.083	Poecilia_mexicana
ENSAPLG00000008415	PABPC1L	66	81.068	ENSPREG00000015886	pabpc1l	98	81.683	Poecilia_reticulata
ENSAPLG00000008415	PABPC1L	98	74.355	ENSPPYG00000011042	PABPC1L	97	74.272	Pongo_abelii
ENSAPLG00000008415	PABPC1L	60	81.967	ENSPCAG00000011787	-	73	83.636	Procavia_capensis
ENSAPLG00000008415	PABPC1L	99	73.920	ENSPCOG00000020630	PABPC1L	99	73.836	Propithecus_coquereli
ENSAPLG00000008415	PABPC1L	99	72.903	ENSPVAG00000012663	PABPC1L	98	73.127	Pteropus_vampyrus
ENSAPLG00000008415	PABPC1L	99	78.177	ENSPNYG00000004101	pabpc1l	99	78.177	Pundamilia_nyererei
ENSAPLG00000008415	PABPC1L	99	67.195	ENSPNAG00000021248	pabpc1l	98	67.200	Pygocentrus_nattereri
ENSAPLG00000008415	PABPC1L	98	65.590	ENSRNOG00000012750	Pabpc1l	98	65.971	Rattus_norvegicus
ENSAPLG00000008415	PABPC1L	98	75.041	ENSRBIG00000035381	PABPC1L	97	74.959	Rhinopithecus_bieti
ENSAPLG00000008415	PABPC1L	98	74.194	ENSRROG00000044498	PABPC1L	97	74.110	Rhinopithecus_roxellana
ENSAPLG00000008415	PABPC1L	98	74.032	ENSSBOG00000009532	-	98	73.948	Saimiri_boliviensis_boliviensis
ENSAPLG00000008415	PABPC1L	98	71.545	ENSSHAG00000011446	PABPC1L	100	71.545	Sarcophilus_harrisii
ENSAPLG00000008415	PABPC1L	99	74.603	ENSSFOG00015017304	pabpc1l	98	74.679	Scleropages_formosus
ENSAPLG00000008415	PABPC1L	99	69.157	ENSSMAG00000010516	pabpc1l	94	85.827	Scophthalmus_maximus
ENSAPLG00000008415	PABPC1L	99	70.952	ENSSDUG00000014743	pabpc1l	98	70.994	Seriola_dumerili
ENSAPLG00000008415	PABPC1L	98	78.177	ENSSLDG00000006981	pabpc1l	95	86.500	Seriola_lalandi_dorsalis
ENSAPLG00000008415	PABPC1L	99	84.051	ENSSPUG00000004233	PABPC1L	97	84.219	Sphenodon_punctatus
ENSAPLG00000008415	PABPC1L	99	64.090	ENSSPAG00000017137	pabpc1l	98	64.065	Stegastes_partitus
ENSAPLG00000008415	PABPC1L	99	72.800	ENSSSCG00000007382	PABPC1L	98	72.859	Sus_scrofa
ENSAPLG00000008415	PABPC1L	99	86.098	ENSTGUG00000005114	PABPC1L	99	86.284	Taeniopygia_guttata
ENSAPLG00000008415	PABPC1L	97	69.984	ENSTRUG00000011085	pabpc1l	96	70.016	Takifugu_rubripes
ENSAPLG00000008415	PABPC1L	99	68.269	ENSTNIG00000017903	pabpc1l	97	68.285	Tetraodon_nigroviridis
ENSAPLG00000008415	PABPC1L	93	81.315	ENSTBEG00000002851	PABPC1L	77	81.625	Tupaia_belangeri
ENSAPLG00000008415	PABPC1L	94	72.666	ENSTTRG00000007618	PABPC1L	98	73.122	Tursiops_truncatus
ENSAPLG00000008415	PABPC1L	99	72.375	ENSUAMG00000017682	PABPC1L	98	72.431	Ursus_americanus
ENSAPLG00000008415	PABPC1L	65	81.616	ENSUMAG00000025436	PABPC1L	92	81.616	Ursus_maritimus
ENSAPLG00000008415	PABPC1L	97	82.547	ENSVVUG00000018939	PABPC1L	98	80.632	Vulpes_vulpes
ENSAPLG00000008415	PABPC1L	99	75.845	ENSXETG00000022831	pabpc1l	97	75.767	Xenopus_tropicalis
ENSAPLG00000008415	PABPC1L	99	77.251	ENSXCOG00000005459	pabpc1l	95	84.848	Xiphophorus_couchianus
ENSAPLG00000008415	PABPC1L	99	71.770	ENSXMAG00000017135	pabpc1l	98	71.820	Xiphophorus_maculatus