EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAPLG00000009175 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Minus strand
Length: 13511 bases
Position: chrKB744974.1:60851-74361
Accession: 101804967
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000008896	UPF1_Zn_bind	PF09416.10	3.3e-75	1	1
ENSAPLP00000008896	ResIII	PF04851.15	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000009581	UPF1-201	3228	XM_005029837	ENSAPLP00000008896	1054 (aa)	XP_005029894	U3INS3

Gene Model

Click here to download ENSAPLG00000009175's gene model file

Pathways

Pathway ID	Pathway Name	Source
apla03013	RNA transport	KEGG
apla03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000009175's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000009175	UPF1	99	98.192	ENSG00000005007	UPF1	93	98.192	Homo_sapiens
ENSAPLG00000009175	UPF1	100	94.034	ENSAPOG00000010916	-	95	94.129	Acanthochromis_polyacanthus
ENSAPLG00000009175	UPF1	100	92.729	ENSAPOG00000023773	upf1	95	92.918	Acanthochromis_polyacanthus
ENSAPLG00000009175	UPF1	100	98.197	ENSAMEG00000011474	UPF1	94	98.197	Ailuropoda_melanoleuca
ENSAPLG00000009175	UPF1	98	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSAPLG00000009175	UPF1	100	92.884	ENSACIG00000019949	upf1	95	92.918	Amphilophus_citrinellus
ENSAPLG00000009175	UPF1	100	92.220	ENSAOCG00000018519	upf1	95	92.897	Amphiprion_ocellaris
ENSAPLG00000009175	UPF1	100	93.939	ENSAOCG00000006352	-	100	91.522	Amphiprion_ocellaris
ENSAPLG00000009175	UPF1	100	92.220	ENSAPEG00000016344	upf1	95	92.897	Amphiprion_percula
ENSAPLG00000009175	UPF1	100	93.939	ENSAPEG00000006292	-	100	91.522	Amphiprion_percula
ENSAPLG00000009175	UPF1	100	94.129	ENSATEG00000016606	-	95	94.223	Anabas_testudineus
ENSAPLG00000009175	UPF1	100	91.511	ENSATEG00000017867	upf1	95	92.444	Anabas_testudineus
ENSAPLG00000009175	UPF1	99	96.860	ENSANAG00000024107	UPF1	95	96.860	Aotus_nancymaae
ENSAPLG00000009175	UPF1	100	93.839	ENSACLG00000022630	-	95	93.839	Astatotilapia_calliptera
ENSAPLG00000009175	UPF1	100	92.694	ENSACLG00000007181	upf1	95	92.729	Astatotilapia_calliptera
ENSAPLG00000009175	UPF1	100	94.697	ENSAMXG00000042187	upf1	95	95.265	Astyanax_mexicanus
ENSAPLG00000009175	UPF1	100	98.292	ENSBTAG00000020922	UPF1	94	98.292	Bos_taurus
ENSAPLG00000009175	UPF1	85	53.603	WBGene00004880	smg-2	90	50.780	Caenorhabditis_elegans
ENSAPLG00000009175	UPF1	99	98.192	ENSCJAG00000019627	UPF1	93	98.192	Callithrix_jacchus
ENSAPLG00000009175	UPF1	100	98.292	ENSCAFG00000014578	UPF1	93	98.292	Canis_familiaris
ENSAPLG00000009175	UPF1	100	98.008	ENSCAFG00020012347	UPF1	93	98.008	Canis_lupus_dingo
ENSAPLG00000009175	UPF1	100	98.008	ENSCHIG00000011018	UPF1	94	98.291	Capra_hircus
ENSAPLG00000009175	UPF1	99	98.002	ENSTSYG00000008877	UPF1	98	98.002	Carlito_syrichta
ENSAPLG00000009175	UPF1	99	97.621	ENSCAPG00000005758	UPF1	95	97.621	Cavia_aperea
ENSAPLG00000009175	UPF1	99	97.710	ENSCPOG00000025463	UPF1	94	97.710	Cavia_porcellus
ENSAPLG00000009175	UPF1	99	98.192	ENSCCAG00000032175	UPF1	94	98.192	Cebus_capucinus
ENSAPLG00000009175	UPF1	99	98.097	ENSCATG00000040306	UPF1	98	98.097	Cercocebus_atys
ENSAPLG00000009175	UPF1	99	98.192	ENSCLAG00000004037	UPF1	99	98.192	Chinchilla_lanigera
ENSAPLG00000009175	UPF1	99	97.907	ENSCSAG00000005276	UPF1	93	97.907	Chlorocebus_sabaeus
ENSAPLG00000009175	UPF1	100	98.297	ENSCPBG00000012513	UPF1	94	98.297	Chrysemys_picta_bellii
ENSAPLG00000009175	UPF1	73	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSAPLG00000009175	UPF1	99	73.321	ENSCSAVG00000006533	-	94	73.605	Ciona_savignyi
ENSAPLG00000009175	UPF1	99	98.192	ENSCANG00000029819	UPF1	97	98.192	Colobus_angolensis_palliatus
ENSAPLG00000009175	UPF1	99	97.336	ENSCGRG00001021067	Upf1	93	97.336	Cricetulus_griseus_chok1gshd
ENSAPLG00000009175	UPF1	99	97.621	ENSCGRG00000013480	Upf1	98	97.621	Cricetulus_griseus_crigri
ENSAPLG00000009175	UPF1	100	87.311	ENSCSEG00000017239	upf1	95	87.595	Cynoglossus_semilaevis
ENSAPLG00000009175	UPF1	100	94.123	ENSCSEG00000016159	-	95	94.123	Cynoglossus_semilaevis
ENSAPLG00000009175	UPF1	100	93.655	ENSCVAG00000010561	upf1	95	93.655	Cyprinodon_variegatus
ENSAPLG00000009175	UPF1	100	94.602	ENSDARG00000016302	upf1	95	95.170	Danio_rerio
ENSAPLG00000009175	UPF1	99	95.152	ENSDORG00000009984	Upf1	95	95.152	Dipodomys_ordii
ENSAPLG00000009175	UPF1	83	74.263	FBgn0030354	Upf1	78	70.855	Drosophila_melanogaster
ENSAPLG00000009175	UPF1	52	88.608	ENSEBUG00000010069	upf1	89	88.608	Eptatretus_burgeri
ENSAPLG00000009175	UPF1	100	97.913	ENSEASG00005006549	UPF1	93	97.913	Equus_asinus_asinus
ENSAPLG00000009175	UPF1	100	97.913	ENSECAG00000010639	UPF1	93	97.913	Equus_caballus
ENSAPLG00000009175	UPF1	100	93.409	ENSELUG00000012916	-	95	93.415	Esox_lucius
ENSAPLG00000009175	UPF1	100	91.800	ENSELUG00000020917	upf1	95	92.083	Esox_lucius
ENSAPLG00000009175	UPF1	100	98.387	ENSFCAG00000009757	UPF1	93	98.387	Felis_catus
ENSAPLG00000009175	UPF1	100	98.299	ENSFALG00000009312	UPF1	96	98.299	Ficedula_albicollis
ENSAPLG00000009175	UPF1	99	98.097	ENSFDAG00000014816	UPF1	99	98.097	Fukomys_damarensis
ENSAPLG00000009175	UPF1	91	94.011	ENSFHEG00000016276	-	96	94.192	Fundulus_heteroclitus
ENSAPLG00000009175	UPF1	100	90.038	ENSFHEG00000006428	upf1	94	90.038	Fundulus_heteroclitus
ENSAPLG00000009175	UPF1	100	94.034	ENSGMOG00000007541	upf1	95	94.602	Gadus_morhua
ENSAPLG00000009175	UPF1	100	98.956	ENSGALG00000003220	UPF1	93	98.956	Gallus_gallus
ENSAPLG00000009175	UPF1	100	93.460	ENSGAFG00000004831	upf1	95	93.460	Gambusia_affinis
ENSAPLG00000009175	UPF1	67	94.043	ENSGAFG00000015443	-	85	94.043	Gambusia_affinis
ENSAPLG00000009175	UPF1	100	98.672	ENSGAGG00000022217	UPF1	94	98.672	Gopherus_agassizii
ENSAPLG00000009175	UPF1	99	97.907	ENSGGOG00000002608	UPF1	99	97.907	Gorilla_gorilla
ENSAPLG00000009175	UPF1	86	87.356	ENSHBUG00000014694	upf1	90	87.356	Haplochromis_burtoni
ENSAPLG00000009175	UPF1	86	100.000	ENSHBUG00000008939	upf1	90	100.000	Haplochromis_burtoni
ENSAPLG00000009175	UPF1	99	97.907	ENSHGLG00000010900	UPF1	93	97.907	Heterocephalus_glaber_female
ENSAPLG00000009175	UPF1	99	96.194	ENSHGLG00100005904	UPF1	96	96.194	Heterocephalus_glaber_male
ENSAPLG00000009175	UPF1	100	92.891	ENSHCOG00000008918	upf1	100	93.014	Hippocampus_comes
ENSAPLG00000009175	UPF1	100	94.886	ENSIPUG00000005108	UPF1	95	95.360	Ictalurus_punctatus
ENSAPLG00000009175	UPF1	99	98.192	ENSSTOG00000009196	UPF1	94	98.192	Ictidomys_tridecemlineatus
ENSAPLG00000009175	UPF1	99	97.241	ENSJJAG00000023151	Upf1	94	97.241	Jaculus_jaculus
ENSAPLG00000009175	UPF1	100	93.939	ENSKMAG00000004962	upf1	95	93.939	Kryptolebias_marmoratus
ENSAPLG00000009175	UPF1	100	90.935	ENSLBEG00000014862	upf1	95	92.243	Labrus_bergylta
ENSAPLG00000009175	UPF1	100	93.845	ENSLBEG00000027848	-	95	93.939	Labrus_bergylta
ENSAPLG00000009175	UPF1	66	97.848	ENSLACG00000008482	UPF1	100	97.848	Latimeria_chalumnae
ENSAPLG00000009175	UPF1	100	96.777	ENSLOCG00000002072	upf1	95	96.777	Lepisosteus_oculatus
ENSAPLG00000009175	UPF1	100	97.723	ENSLAFG00000014963	UPF1	93	97.723	Loxodonta_africana
ENSAPLG00000009175	UPF1	99	98.192	ENSMFAG00000037748	UPF1	94	98.192	Macaca_fascicularis
ENSAPLG00000009175	UPF1	99	98.192	ENSMMUG00000023286	UPF1	94	98.192	Macaca_mulatta
ENSAPLG00000009175	UPF1	99	98.192	ENSMNEG00000000046	UPF1	94	98.192	Macaca_nemestrina
ENSAPLG00000009175	UPF1	99	98.192	ENSMLEG00000028404	UPF1	99	98.192	Mandrillus_leucophaeus
ENSAPLG00000009175	UPF1	100	93.277	ENSMAMG00000006231	-	95	93.845	Mastacembelus_armatus
ENSAPLG00000009175	UPF1	100	91.138	ENSMAMG00000006229	upf1	95	92.257	Mastacembelus_armatus
ENSAPLG00000009175	UPF1	100	91.146	ENSMZEG00005003489	upf1	95	92.502	Maylandia_zebra
ENSAPLG00000009175	UPF1	100	93.839	ENSMZEG00005016386	-	95	93.839	Maylandia_zebra
ENSAPLG00000009175	UPF1	99	98.859	ENSMGAG00000004745	UPF1	100	98.859	Meleagris_gallopavo
ENSAPLG00000009175	UPF1	99	97.621	ENSMAUG00000011398	Upf1	95	97.621	Mesocricetus_auratus
ENSAPLG00000009175	UPF1	99	97.812	ENSMICG00000001659	UPF1	93	97.812	Microcebus_murinus
ENSAPLG00000009175	UPF1	99	97.621	ENSMOCG00000005699	Upf1	94	97.621	Microtus_ochrogaster
ENSAPLG00000009175	UPF1	100	91.667	ENSMMOG00000007537	-	99	91.761	Mola_mola
ENSAPLG00000009175	UPF1	100	92.030	ENSMMOG00000007881	upf1	95	92.512	Mola_mola
ENSAPLG00000009175	UPF1	100	98.956	ENSMODG00000003689	UPF1	95	98.670	Monodelphis_domestica
ENSAPLG00000009175	UPF1	100	92.315	ENSMALG00000000144	upf1	95	92.694	Monopterus_albus
ENSAPLG00000009175	UPF1	100	92.547	ENSMALG00000018100	-	95	92.642	Monopterus_albus
ENSAPLG00000009175	UPF1	99	97.526	MGP_CAROLIEiJ_G0031142	Upf1	94	97.526	Mus_caroli
ENSAPLG00000009175	UPF1	99	97.526	ENSMUSG00000058301	Upf1	94	97.526	Mus_musculus
ENSAPLG00000009175	UPF1	99	97.526	MGP_PahariEiJ_G0021607	Upf1	94	97.526	Mus_pahari
ENSAPLG00000009175	UPF1	99	97.526	MGP_SPRETEiJ_G0032260	Upf1	94	97.526	Mus_spretus
ENSAPLG00000009175	UPF1	100	98.008	ENSMPUG00000015516	UPF1	93	98.008	Mustela_putorius_furo
ENSAPLG00000009175	UPF1	100	97.818	ENSMLUG00000012122	UPF1	93	97.818	Myotis_lucifugus
ENSAPLG00000009175	UPF1	99	97.526	ENSNGAG00000024107	Upf1	93	97.526	Nannospalax_galili
ENSAPLG00000009175	UPF1	100	91.252	ENSNBRG00000022069	-	100	92.981	Neolamprologus_brichardi
ENSAPLG00000009175	UPF1	100	90.892	ENSNBRG00000000670	upf1	95	90.935	Neolamprologus_brichardi
ENSAPLG00000009175	UPF1	99	92.388	ENSNLEG00000006062	UPF1	99	92.388	Nomascus_leucogenys
ENSAPLG00000009175	UPF1	82	95.490	ENSMEUG00000014146	-	76	95.490	Notamacropus_eugenii
ENSAPLG00000009175	UPF1	99	90.105	ENSOPRG00000014018	UPF1	99	90.105	Ochotona_princeps
ENSAPLG00000009175	UPF1	99	98.097	ENSODEG00000012426	UPF1	95	98.097	Octodon_degus
ENSAPLG00000009175	UPF1	100	93.934	ENSONIG00000012729	-	95	93.934	Oreochromis_niloticus
ENSAPLG00000009175	UPF1	100	91.426	ENSONIG00000010452	upf1	95	92.784	Oreochromis_niloticus
ENSAPLG00000009175	UPF1	100	97.917	ENSOANG00000004568	UPF1	94	97.917	Ornithorhynchus_anatinus
ENSAPLG00000009175	UPF1	100	93.655	ENSORLG00000008453	upf1	95	93.655	Oryzias_latipes
ENSAPLG00000009175	UPF1	100	93.655	ENSORLG00020014758	upf1	95	93.655	Oryzias_latipes_hni
ENSAPLG00000009175	UPF1	100	93.655	ENSORLG00015010165	upf1	100	89.788	Oryzias_latipes_hsok
ENSAPLG00000009175	UPF1	100	93.655	ENSOMEG00000003665	upf1	95	93.655	Oryzias_melastigma
ENSAPLG00000009175	UPF1	99	98.002	ENSOGAG00000012866	UPF1	93	98.002	Otolemur_garnettii
ENSAPLG00000009175	UPF1	96	97.835	ENSOARG00000010739	UPF1	94	97.835	Ovis_aries
ENSAPLG00000009175	UPF1	99	98.192	ENSPPAG00000043884	UPF1	96	98.192	Pan_paniscus
ENSAPLG00000009175	UPF1	100	98.387	ENSPPRG00000023470	UPF1	93	98.387	Panthera_pardus
ENSAPLG00000009175	UPF1	99	96.011	ENSPTIG00000010159	UPF1	99	96.011	Panthera_tigris_altaica
ENSAPLG00000009175	UPF1	99	98.192	ENSPTRG00000010721	UPF1	94	98.192	Pan_troglodytes
ENSAPLG00000009175	UPF1	99	98.192	ENSPANG00000008847	UPF1	94	98.192	Papio_anubis
ENSAPLG00000009175	UPF1	90	96.455	ENSPKIG00000006069	upf1	91	96.855	Paramormyrops_kingsleyae
ENSAPLG00000009175	UPF1	73	98.954	ENSPSIG00000009491	UPF1	100	98.954	Pelodiscus_sinensis
ENSAPLG00000009175	UPF1	100	90.557	ENSPMGG00000017327	upf1	95	90.669	Periophthalmus_magnuspinnatus
ENSAPLG00000009175	UPF1	99	97.621	ENSPEMG00000001085	Upf1	94	97.621	Peromyscus_maniculatus_bairdii
ENSAPLG00000009175	UPF1	100	89.005	ENSPMAG00000001206	upf1	95	89.005	Petromyzon_marinus
ENSAPLG00000009175	UPF1	100	98.672	ENSPCIG00000006156	UPF1	93	98.672	Phascolarctos_cinereus
ENSAPLG00000009175	UPF1	100	91.174	ENSPLAG00000018155	-	95	91.174	Poecilia_latipinna
ENSAPLG00000009175	UPF1	100	93.555	ENSPLAG00000016232	-	95	93.555	Poecilia_latipinna
ENSAPLG00000009175	UPF1	100	93.649	ENSPMEG00000016319	-	95	93.649	Poecilia_mexicana
ENSAPLG00000009175	UPF1	100	91.580	ENSPMEG00000011443	-	95	91.580	Poecilia_mexicana
ENSAPLG00000009175	UPF1	100	93.365	ENSPREG00000011247	-	95	93.365	Poecilia_reticulata
ENSAPLG00000009175	UPF1	100	91.455	ENSPREG00000009940	upf1	95	91.455	Poecilia_reticulata
ENSAPLG00000009175	UPF1	99	92.864	ENSPPYG00000009752	UPF1	93	92.864	Pongo_abelii
ENSAPLG00000009175	UPF1	70	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSAPLG00000009175	UPF1	99	98.287	ENSPCOG00000023813	UPF1	94	98.287	Propithecus_coquereli
ENSAPLG00000009175	UPF1	67	100.000	ENSPVAG00000003183	UPF1	62	100.000	Pteropus_vampyrus
ENSAPLG00000009175	UPF1	100	91.146	ENSPNYG00000003694	upf1	95	92.502	Pundamilia_nyererei
ENSAPLG00000009175	UPF1	100	93.934	ENSPNYG00000016731	-	95	93.934	Pundamilia_nyererei
ENSAPLG00000009175	UPF1	100	94.697	ENSPNAG00000025614	upf1	95	95.265	Pygocentrus_nattereri
ENSAPLG00000009175	UPF1	99	97.526	ENSRNOG00000020134	Upf1	94	97.526	Rattus_norvegicus
ENSAPLG00000009175	UPF1	99	95.814	ENSRBIG00000013894	UPF1	98	97.727	Rhinopithecus_bieti
ENSAPLG00000009175	UPF1	99	98.192	ENSRROG00000040935	UPF1	98	97.727	Rhinopithecus_roxellana
ENSAPLG00000009175	UPF1	80	55.128	YMR080C	NAM7	87	55.128	Saccharomyces_cerevisiae
ENSAPLG00000009175	UPF1	99	98.190	ENSSBOG00000023632	UPF1	96	98.190	Saimiri_boliviensis_boliviensis
ENSAPLG00000009175	UPF1	99	98.670	ENSSHAG00000010499	UPF1	100	98.670	Sarcophilus_harrisii
ENSAPLG00000009175	UPF1	100	96.777	ENSSFOG00015021095	upf1	99	96.679	Scleropages_formosus
ENSAPLG00000009175	UPF1	100	93.939	ENSSMAG00000021018	-	95	94.034	Scophthalmus_maximus
ENSAPLG00000009175	UPF1	100	90.467	ENSSMAG00000005055	upf1	95	91.503	Scophthalmus_maximus
ENSAPLG00000009175	UPF1	100	91.418	ENSSDUG00000013320	upf1	95	92.537	Seriola_dumerili
ENSAPLG00000009175	UPF1	100	94.318	ENSSDUG00000009629	-	95	94.413	Seriola_dumerili
ENSAPLG00000009175	UPF1	100	92.279	ENSSLDG00000020868	upf1	95	92.857	Seriola_lalandi_dorsalis
ENSAPLG00000009175	UPF1	100	94.318	ENSSLDG00000006878	-	95	94.413	Seriola_lalandi_dorsalis
ENSAPLG00000009175	UPF1	100	98.577	ENSSPUG00000010538	UPF1	94	98.577	Sphenodon_punctatus
ENSAPLG00000009175	UPF1	100	90.521	ENSSPAG00000000003	upf1	95	90.548	Stegastes_partitus
ENSAPLG00000009175	UPF1	100	93.934	ENSSPAG00000011521	-	95	93.934	Stegastes_partitus
ENSAPLG00000009175	UPF1	100	98.197	ENSSSCG00000039301	UPF1	99	97.911	Sus_scrofa
ENSAPLG00000009175	UPF1	82	92.263	ENSTGUG00000001057	UPF1	89	98.505	Taeniopygia_guttata
ENSAPLG00000009175	UPF1	100	92.891	ENSTRUG00000005131	-	95	92.986	Takifugu_rubripes
ENSAPLG00000009175	UPF1	100	92.315	ENSTRUG00000000150	upf1	95	92.315	Takifugu_rubripes
ENSAPLG00000009175	UPF1	100	93.928	ENSTTRG00000011544	UPF1	93	93.928	Tursiops_truncatus
ENSAPLG00000009175	UPF1	100	98.008	ENSUAMG00000007093	UPF1	93	98.008	Ursus_americanus
ENSAPLG00000009175	UPF1	100	97.913	ENSUMAG00000006652	UPF1	99	98.154	Ursus_maritimus
ENSAPLG00000009175	UPF1	100	98.008	ENSVVUG00000007797	UPF1	93	98.008	Vulpes_vulpes
ENSAPLG00000009175	UPF1	99	84.295	ENSXETG00000013602	upf1	93	84.295	Xenopus_tropicalis
ENSAPLG00000009175	UPF1	96	91.257	ENSXCOG00000015275	-	91	91.257	Xiphophorus_couchianus
ENSAPLG00000009175	UPF1	99	93.762	ENSXCOG00000005764	-	100	93.762	Xiphophorus_couchianus
ENSAPLG00000009175	UPF1	100	91.374	ENSXMAG00000001703	-	95	91.374	Xiphophorus_maculatus
ENSAPLG00000009175	UPF1	100	93.460	ENSXMAG00000002540	-	95	93.460	Xiphophorus_maculatus