EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPLG00000009729 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Minus strand
Length: 11741 bases
Position: chrKB742637.1:261236-272976
Accession: 101802732
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000009468	PABP	PF00658.18	2.5e-32	1	1
ENSAPLP00000009468	RRM_5	PF13893.6	1e-09	1	2
ENSAPLP00000009468	RRM_5	PF13893.6	1e-09	2	2
ENSAPLP00000009468	RRM_1	PF00076.22	6.5e-92	1	4
ENSAPLP00000009468	RRM_1	PF00076.22	6.5e-92	2	4
ENSAPLP00000009468	RRM_1	PF00076.22	6.5e-92	3	4
ENSAPLP00000009468	RRM_1	PF00076.22	6.5e-92	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000010160	-	1881	XM_005013012	ENSAPLP00000009468	626 (aa)	XP_005013069	U3IQE5

Gene Model

Click here to download ENSAPLG00000009729's gene model file

Pathways

Pathway ID	Pathway Name	Source
apla03013	RNA transport	KEGG
apla03015	mRNA surveillance pathway	KEGG
apla03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000009729's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPLG00000009729	-	57	45.833	ENSAPLG00000001216	SF3B4	99	45.833
ENSAPLG00000009729	-	58	36.145	ENSAPLG00000010429	ELAVL2	83	36.145
ENSAPLG00000009729	-	53	38.636	ENSAPLG00000008482	CELF1	63	38.636
ENSAPLG00000009729	-	58	34.459	ENSAPLG00000003139	ELAVL1	95	34.459
ENSAPLG00000009729	-	58	38.372	ENSAPLG00000010064	CELF2	54	37.500
ENSAPLG00000009729	-	58	34.940	ENSAPLG00000002634	ELAVL4	87	34.940
ENSAPLG00000009729	-	99	78.521	ENSAPLG00000001129	PABPC1	98	78.169
ENSAPLG00000009729	-	98	70.144	ENSAPLG00000008415	PABPC1L	99	70.016

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000009729	-	100	91.429	ENSG00000090621	PABPC4	99	98.198	Homo_sapiens
ENSAPLG00000009729	-	99	85.215	ENSAPOG00000001161	pabpc4	99	85.197	Acanthochromis_polyacanthus
ENSAPLG00000009729	-	100	87.405	ENSAMEG00000011535	-	99	87.405	Ailuropoda_melanoleuca
ENSAPLG00000009729	-	98	53.809	ENSAMEG00000015083	-	98	53.323	Ailuropoda_melanoleuca
ENSAPLG00000009729	-	100	85.512	ENSACIG00000023343	pabpc4	99	86.142	Amphilophus_citrinellus
ENSAPLG00000009729	-	99	85.374	ENSAOCG00000021529	pabpc4	99	85.354	Amphiprion_ocellaris
ENSAPLG00000009729	-	99	85.374	ENSAPEG00000019196	pabpc4	99	85.354	Amphiprion_percula
ENSAPLG00000009729	-	99	85.238	ENSATEG00000007402	pabpc4	99	85.377	Anabas_testudineus
ENSAPLG00000009729	-	100	95.528	ENSACAG00000002544	PABPC4	100	95.528	Anolis_carolinensis
ENSAPLG00000009729	-	100	91.429	ENSANAG00000025079	PABPC4	99	91.429	Aotus_nancymaae
ENSAPLG00000009729	-	100	85.039	ENSACLG00000019558	pabpc4	99	85.669	Astatotilapia_calliptera
ENSAPLG00000009729	-	100	81.073	ENSAMXG00000018779	pabpc4	99	81.703	Astyanax_mexicanus
ENSAPLG00000009729	-	100	87.888	ENSBTAG00000017125	PABPC4	99	88.043	Bos_taurus
ENSAPLG00000009729	-	57	84.663	ENSBTAG00000048536	-	93	84.663	Bos_taurus
ENSAPLG00000009729	-	100	91.270	ENSCJAG00000002512	-	99	91.270	Callithrix_jacchus
ENSAPLG00000009729	-	64	82.787	ENSCJAG00000045953	-	92	82.716	Callithrix_jacchus
ENSAPLG00000009729	-	100	91.587	ENSCAFG00000003081	PABPC4	99	91.587	Canis_familiaris
ENSAPLG00000009729	-	96	92.040	ENSCAFG00020004161	PABPC4	99	87.557	Canis_lupus_dingo
ENSAPLG00000009729	-	100	71.115	ENSCHIG00000023385	-	99	71.115	Capra_hircus
ENSAPLG00000009729	-	100	87.557	ENSCHIG00000019398	-	99	87.557	Capra_hircus
ENSAPLG00000009729	-	100	91.429	ENSTSYG00000006532	PABPC4	99	91.429	Carlito_syrichta
ENSAPLG00000009729	-	100	91.774	ENSCAPG00000015984	PABPC4	99	91.774	Cavia_aperea
ENSAPLG00000009729	-	100	91.429	ENSCPOG00000009552	PABPC4	99	91.429	Cavia_porcellus
ENSAPLG00000009729	-	100	91.270	ENSCCAG00000037306	PABPC4	99	91.270	Cebus_capucinus
ENSAPLG00000009729	-	100	91.429	ENSCATG00000042164	PABPC4	99	91.429	Cercocebus_atys
ENSAPLG00000009729	-	100	91.111	ENSCLAG00000011899	PABPC4	99	91.111	Chinchilla_lanigera
ENSAPLG00000009729	-	100	87.405	ENSCSAG00000001135	PABPC4	99	87.405	Chlorocebus_sabaeus
ENSAPLG00000009729	-	87	91.557	ENSCHOG00000005327	PABPC4	81	91.557	Choloepus_hoffmanni
ENSAPLG00000009729	-	100	97.937	ENSCPBG00000001038	PABPC4	100	97.937	Chrysemys_picta_bellii
ENSAPLG00000009729	-	100	91.935	ENSCANG00000034177	PABPC4	99	91.935	Colobus_angolensis_palliatus
ENSAPLG00000009729	-	99	88.585	ENSCGRG00001018166	Pabpc4	100	87.244	Cricetulus_griseus_chok1gshd
ENSAPLG00000009729	-	99	89.216	ENSCGRG00000009777	Pabpc4	100	87.840	Cricetulus_griseus_crigri
ENSAPLG00000009729	-	99	84.543	ENSCSEG00000000130	pabpc4	99	85.174	Cynoglossus_semilaevis
ENSAPLG00000009729	-	100	86.240	ENSCVAG00000019246	pabpc4	99	86.880	Cyprinodon_variegatus
ENSAPLG00000009729	-	99	87.639	ENSDARG00000059259	pabpc4	100	88.158	Danio_rerio
ENSAPLG00000009729	-	100	91.771	ENSDNOG00000018444	-	99	91.771	Dasypus_novemcinctus
ENSAPLG00000009729	-	100	88.491	ENSDORG00000011581	Pabpc4	99	88.491	Dipodomys_ordii
ENSAPLG00000009729	-	100	89.062	ENSETEG00000018453	-	84	89.062	Echinops_telfairi
ENSAPLG00000009729	-	87	60.073	ENSETEG00000009172	-	99	60.073	Echinops_telfairi
ENSAPLG00000009729	-	98	78.317	ENSEBUG00000000992	pabpc4	98	77.634	Eptatretus_burgeri
ENSAPLG00000009729	-	97	78.654	ENSEBUG00000013782	pabpc4	99	78.135	Eptatretus_burgeri
ENSAPLG00000009729	-	100	87.557	ENSEASG00005014119	PABPC4	99	87.557	Equus_asinus_asinus
ENSAPLG00000009729	-	100	87.557	ENSECAG00000009396	PABPC4	99	87.557	Equus_caballus
ENSAPLG00000009729	-	98	85.626	ENSEEUG00000002962	PABPC4	99	85.281	Erinaceus_europaeus
ENSAPLG00000009729	-	99	86.054	ENSELUG00000003195	pabpc4	99	86.478	Esox_lucius
ENSAPLG00000009729	-	100	91.587	ENSFCAG00000015254	-	99	91.587	Felis_catus
ENSAPLG00000009729	-	100	96.667	ENSFALG00000000543	PABPC4	100	96.667	Ficedula_albicollis
ENSAPLG00000009729	-	100	86.039	ENSFDAG00000020016	-	99	87.102	Fukomys_damarensis
ENSAPLG00000009729	-	90	58.422	ENSFDAG00000010581	-	100	55.536	Fukomys_damarensis
ENSAPLG00000009729	-	100	85.197	ENSFHEG00000007548	pabpc4	99	85.827	Fundulus_heteroclitus
ENSAPLG00000009729	-	100	84.640	ENSGMOG00000019025	pabpc4	98	85.280	Gadus_morhua
ENSAPLG00000009729	-	100	97.302	ENSGALG00000003800	PABPC4	100	97.302	Gallus_gallus
ENSAPLG00000009729	-	100	93.632	ENSGAFG00000018195	pabpc4	98	96.648	Gambusia_affinis
ENSAPLG00000009729	-	99	84.480	ENSGACG00000007179	pabpc4	98	85.120	Gasterosteus_aculeatus
ENSAPLG00000009729	-	100	97.619	ENSGAGG00000001888	PABPC4	100	97.619	Gopherus_agassizii
ENSAPLG00000009729	-	100	91.429	ENSGGOG00000004002	PABPC4	99	91.429	Gorilla_gorilla
ENSAPLG00000009729	-	100	84.882	ENSHBUG00000020206	pabpc4	99	85.512	Haplochromis_burtoni
ENSAPLG00000009729	-	100	91.270	ENSHGLG00000011162	PABPC4	99	91.270	Heterocephalus_glaber_female
ENSAPLG00000009729	-	100	91.270	ENSHGLG00100001580	PABPC4	99	91.270	Heterocephalus_glaber_male
ENSAPLG00000009729	-	99	84.992	ENSHCOG00000012694	pabpc4	99	85.624	Hippocampus_comes
ENSAPLG00000009729	-	98	85.233	ENSIPUG00000016620	pabpc4	99	85.354	Ictalurus_punctatus
ENSAPLG00000009729	-	100	89.365	ENSSTOG00000010416	PABPC4	99	88.491	Ictidomys_tridecemlineatus
ENSAPLG00000009729	-	100	86.470	ENSJJAG00000007781	Pabpc4	99	86.470	Jaculus_jaculus
ENSAPLG00000009729	-	100	84.748	ENSKMAG00000013597	pabpc4	99	84.929	Kryptolebias_marmoratus
ENSAPLG00000009729	-	100	84.301	ENSLBEG00000013654	pabpc4	99	83.856	Labrus_bergylta
ENSAPLG00000009729	-	100	92.271	ENSLACG00000011907	PABPC4	100	92.271	Latimeria_chalumnae
ENSAPLG00000009729	-	100	89.028	ENSLOCG00000001877	pabpc4	100	89.812	Lepisosteus_oculatus
ENSAPLG00000009729	-	100	89.524	ENSLAFG00000000151	PABPC4	99	89.524	Loxodonta_africana
ENSAPLG00000009729	-	100	91.429	ENSMFAG00000041481	PABPC4	99	91.429	Macaca_fascicularis
ENSAPLG00000009729	-	100	87.405	ENSMMUG00000007497	PABPC4	99	87.405	Macaca_mulatta
ENSAPLG00000009729	-	100	91.270	ENSMNEG00000043054	PABPC4	99	91.270	Macaca_nemestrina
ENSAPLG00000009729	-	100	91.429	ENSMLEG00000040716	PABPC4	99	91.429	Mandrillus_leucophaeus
ENSAPLG00000009729	-	99	85.215	ENSMAMG00000010025	pabpc4	99	85.512	Mastacembelus_armatus
ENSAPLG00000009729	-	100	84.882	ENSMZEG00005006141	pabpc4	99	85.512	Maylandia_zebra
ENSAPLG00000009729	-	100	94.208	ENSMGAG00000005408	PABPC4	100	94.208	Meleagris_gallopavo
ENSAPLG00000009729	-	76	94.792	ENSMAUG00000019763	-	84	89.908	Mesocricetus_auratus
ENSAPLG00000009729	-	71	84.135	ENSMAUG00000001295	-	97	84.135	Mesocricetus_auratus
ENSAPLG00000009729	-	58	82.635	ENSMAUG00000004089	-	92	80.702	Mesocricetus_auratus
ENSAPLG00000009729	-	96	78.114	ENSMICG00000036729	-	99	78.470	Microcebus_murinus
ENSAPLG00000009729	-	89	88.612	ENSMICG00000016633	-	100	88.750	Microcebus_murinus
ENSAPLG00000009729	-	99	91.200	ENSMOCG00000006763	Pabpc4	99	90.635	Microtus_ochrogaster
ENSAPLG00000009729	-	100	82.464	ENSMMOG00000002363	pabpc4	99	81.424	Mola_mola
ENSAPLG00000009729	-	100	89.482	ENSMODG00000017657	-	100	89.482	Monodelphis_domestica
ENSAPLG00000009729	-	59	74.797	ENSMODG00000018051	-	95	74.797	Monodelphis_domestica
ENSAPLG00000009729	-	99	84.945	ENSMALG00000011017	pabpc4	99	84.929	Monopterus_albus
ENSAPLG00000009729	-	100	78.075	MGP_CAROLIEiJ_G0024864	-	99	78.075	Mus_caroli
ENSAPLG00000009729	-	100	85.824	MGP_CAROLIEiJ_G0026435	-	100	97.872	Mus_caroli
ENSAPLG00000009729	-	100	90.635	ENSMUSG00000011257	Pabpc4	100	94.048	Mus_musculus
ENSAPLG00000009729	-	100	86.133	MGP_PahariEiJ_G0028765	Pabpc4	100	98.582	Mus_pahari
ENSAPLG00000009729	-	100	71.282	MGP_SPRETEiJ_G0027415	Pabpc4	100	97.872	Mus_spretus
ENSAPLG00000009729	-	100	87.557	ENSMPUG00000014414	-	99	87.557	Mustela_putorius_furo
ENSAPLG00000009729	-	95	50.417	ENSMPUG00000006836	-	99	50.417	Mustela_putorius_furo
ENSAPLG00000009729	-	100	89.683	ENSMLUG00000012068	PABPC4	99	89.683	Myotis_lucifugus
ENSAPLG00000009729	-	100	89.365	ENSNGAG00000018292	Pabpc4	99	89.365	Nannospalax_galili
ENSAPLG00000009729	-	61	96.618	ENSNBRG00000009708	pabpc4	98	96.618	Neolamprologus_brichardi
ENSAPLG00000009729	-	65	91.667	ENSNBRG00000010047	-	72	91.667	Neolamprologus_brichardi
ENSAPLG00000009729	-	100	91.429	ENSNLEG00000011928	PABPC4	99	91.429	Nomascus_leucogenys
ENSAPLG00000009729	-	85	92.063	ENSOPRG00000011984	PABPC4	87	92.063	Ochotona_princeps
ENSAPLG00000009729	-	99	80.973	ENSODEG00000017434	-	99	81.607	Octodon_degus
ENSAPLG00000009729	-	53	84.286	ENSODEG00000013457	-	100	84.286	Octodon_degus
ENSAPLG00000009729	-	100	90.952	ENSODEG00000006592	-	99	90.952	Octodon_degus
ENSAPLG00000009729	-	100	84.882	ENSONIG00000008176	pabpc4	99	85.512	Oreochromis_niloticus
ENSAPLG00000009729	-	100	96.935	ENSOANG00000010001	PABPC4	99	96.935	Ornithorhynchus_anatinus
ENSAPLG00000009729	-	96	87.342	ENSOCUG00000000562	PABPC4	88	87.342	Oryctolagus_cuniculus
ENSAPLG00000009729	-	99	91.975	ENSORLG00000017479	pabpc4	99	91.975	Oryzias_latipes
ENSAPLG00000009729	-	99	91.975	ENSORLG00020018644	pabpc4	99	91.975	Oryzias_latipes_hni
ENSAPLG00000009729	-	99	91.975	ENSORLG00015015042	pabpc4	99	91.975	Oryzias_latipes_hsok
ENSAPLG00000009729	-	99	85.191	ENSOMEG00000014410	pabpc4	99	85.220	Oryzias_melastigma
ENSAPLG00000009729	-	100	87.461	ENSOGAG00000004067	PABPC4	99	87.616	Otolemur_garnettii
ENSAPLG00000009729	-	100	87.557	ENSOARG00000020060	PABPC4	99	87.557	Ovis_aries
ENSAPLG00000009729	-	100	91.429	ENSPPAG00000043625	PABPC4	99	91.429	Pan_paniscus
ENSAPLG00000009729	-	100	91.587	ENSPPRG00000024727	PABPC4	99	91.587	Panthera_pardus
ENSAPLG00000009729	-	100	91.587	ENSPTIG00000005829	PABPC4	99	91.587	Panthera_tigris_altaica
ENSAPLG00000009729	-	100	91.429	ENSPTRG00000000573	PABPC4	99	91.429	Pan_troglodytes
ENSAPLG00000009729	-	100	91.587	ENSPANG00000009484	PABPC4	99	91.587	Papio_anubis
ENSAPLG00000009729	-	99	87.382	ENSPKIG00000025356	pabpc4	99	88.013	Paramormyrops_kingsleyae
ENSAPLG00000009729	-	100	98.095	ENSPSIG00000016892	PABPC4	100	98.095	Pelodiscus_sinensis
ENSAPLG00000009729	-	100	82.965	ENSPMGG00000009073	pabpc4	99	82.205	Periophthalmus_magnuspinnatus
ENSAPLG00000009729	-	100	90.000	ENSPEMG00000023569	-	99	90.000	Peromyscus_maniculatus_bairdii
ENSAPLG00000009729	-	100	85.150	ENSPEMG00000024193	-	99	85.150	Peromyscus_maniculatus_bairdii
ENSAPLG00000009729	-	97	73.006	ENSPMAG00000007885	pabpc4	99	72.200	Petromyzon_marinus
ENSAPLG00000009729	-	89	75.309	ENSPMAG00000002836	pabpc4	99	75.838	Petromyzon_marinus
ENSAPLG00000009729	-	100	97.852	ENSPCIG00000020674	PABPC4	100	97.852	Phascolarctos_cinereus
ENSAPLG00000009729	-	100	84.252	ENSPFOG00000002682	pabpc4	99	85.512	Poecilia_formosa
ENSAPLG00000009729	-	100	84.409	ENSPLAG00000010112	pabpc4	99	85.669	Poecilia_latipinna
ENSAPLG00000009729	-	99	84.897	ENSPMEG00000019739	pabpc4	99	85.512	Poecilia_mexicana
ENSAPLG00000009729	-	100	85.197	ENSPREG00000001589	pabpc4	99	85.827	Poecilia_reticulata
ENSAPLG00000009729	-	100	87.405	ENSPPYG00000001506	PABPC4	99	87.405	Pongo_abelii
ENSAPLG00000009729	-	100	82.853	ENSPCAG00000003341	PABPC4	99	82.853	Procavia_capensis
ENSAPLG00000009729	-	100	73.239	ENSPCOG00000025882	-	94	86.000	Propithecus_coquereli
ENSAPLG00000009729	-	100	90.650	ENSPCOG00000023725	-	99	90.808	Propithecus_coquereli
ENSAPLG00000009729	-	100	87.374	ENSPVAG00000002187	PABPC4	99	87.374	Pteropus_vampyrus
ENSAPLG00000009729	-	100	85.039	ENSPNYG00000006134	pabpc4	99	85.669	Pundamilia_nyererei
ENSAPLG00000009729	-	100	85.759	ENSPNAG00000024355	pabpc4	100	86.385	Pygocentrus_nattereri
ENSAPLG00000009729	-	100	87.869	ENSRNOG00000015642	Pabpc4	99	87.869	Rattus_norvegicus
ENSAPLG00000009729	-	100	85.692	ENSRNOG00000028592	AABR07035074.1	99	85.692	Rattus_norvegicus
ENSAPLG00000009729	-	100	91.429	ENSRBIG00000039761	PABPC4	99	91.429	Rhinopithecus_bieti
ENSAPLG00000009729	-	100	91.429	ENSRROG00000033355	PABPC4	99	91.429	Rhinopithecus_roxellana
ENSAPLG00000009729	-	100	91.429	ENSSBOG00000026193	PABPC4	99	91.429	Saimiri_boliviensis_boliviensis
ENSAPLG00000009729	-	100	93.333	ENSSHAG00000018139	PABPC4	100	93.333	Sarcophilus_harrisii
ENSAPLG00000009729	-	99	89.145	ENSSFOG00015023514	pabpc4	99	89.145	Scleropages_formosus
ENSAPLG00000009729	-	99	84.652	ENSSMAG00000009007	pabpc4	99	85.285	Scophthalmus_maximus
ENSAPLG00000009729	-	99	85.374	ENSSDUG00000012683	pabpc4	99	85.354	Seriola_dumerili
ENSAPLG00000009729	-	99	85.374	ENSSLDG00000013025	pabpc4	99	85.354	Seriola_lalandi_dorsalis
ENSAPLG00000009729	-	100	81.972	ENSSARG00000000310	PABPC4	98	81.972	Sorex_araneus
ENSAPLG00000009729	-	100	95.873	ENSSPUG00000003204	PABPC4	100	95.873	Sphenodon_punctatus
ENSAPLG00000009729	-	99	85.374	ENSSPAG00000009252	pabpc4	99	85.354	Stegastes_partitus
ENSAPLG00000009729	-	100	91.587	ENSSSCG00000003660	-	99	91.587	Sus_scrofa
ENSAPLG00000009729	-	89	46.903	ENSSSCG00000036170	-	96	45.502	Sus_scrofa
ENSAPLG00000009729	-	100	92.284	ENSTGUG00000001266	PABPC4	100	92.284	Taeniopygia_guttata
ENSAPLG00000009729	-	99	85.285	ENSTRUG00000005907	pabpc4	99	85.918	Takifugu_rubripes
ENSAPLG00000009729	-	99	81.388	ENSTNIG00000016902	pabpc4	99	81.388	Tetraodon_nigroviridis
ENSAPLG00000009729	-	99	77.609	ENSTBEG00000009035	PABPC4	99	77.609	Tupaia_belangeri
ENSAPLG00000009729	-	99	67.736	ENSTTRG00000014340	PABPC4	99	76.263	Tursiops_truncatus
ENSAPLG00000009729	-	100	91.587	ENSUAMG00000000303	PABPC4	99	91.587	Ursus_americanus
ENSAPLG00000009729	-	100	91.592	ENSUMAG00000019585	PABPC4	99	91.592	Ursus_maritimus
ENSAPLG00000009729	-	79	71.681	ENSVPAG00000010041	PABPC4	73	71.681	Vicugna_pacos
ENSAPLG00000009729	-	100	91.587	ENSVVUG00000005215	PABPC4	99	91.587	Vulpes_vulpes
ENSAPLG00000009729	-	61	95.238	ENSXETG00000027221	-	100	95.238	Xenopus_tropicalis
ENSAPLG00000009729	-	100	86.508	ENSXETG00000010946	pabpc4	100	86.508	Xenopus_tropicalis
ENSAPLG00000009729	-	100	92.208	ENSXCOG00000013190	pabpc4	96	93.396	Xiphophorus_couchianus
ENSAPLG00000009729	-	100	85.039	ENSXMAG00000019007	pabpc4	99	85.669	Xiphophorus_maculatus