EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAPLG00000010263 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Minus strand
Length: 18422 bases
Position: chrKB743276.1:273695-292116
Accession: 101798513
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000010035	EST1	PF10374.9	1.3e-24	1	1
ENSAPLP00000010035	EST1_DNA_bind	PF10373.9	7e-40	1	2
ENSAPLP00000010035	EST1_DNA_bind	PF10373.9	7e-40	2	2
ENSAPLP00000010035	PIN_4	PF13638.6	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000010739	SMG5-201	3247	XM_005021708	ENSAPLP00000010035	1024 (aa)	-	R0L2D9

Gene Model

Click here to download ENSAPLG00000010263's gene model file

Pathways

Pathway ID	Pathway Name	Source
apla03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000010263's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000010263	SMG5	100	78.732	ENSG00000198952	SMG5	98	78.927	Homo_sapiens
ENSAPLG00000010263	SMG5	100	65.887	ENSAPOG00000019690	smg5	98	65.920	Acanthochromis_polyacanthus
ENSAPLG00000010263	SMG5	100	76.316	ENSAMEG00000014458	SMG5	100	76.316	Ailuropoda_melanoleuca
ENSAPLG00000010263	SMG5	100	65.024	ENSACIG00000001353	smg5	98	65.444	Amphilophus_citrinellus
ENSAPLG00000010263	SMG5	99	63.988	ENSAOCG00000019483	smg5	98	63.978	Amphiprion_ocellaris
ENSAPLG00000010263	SMG5	100	65.184	ENSAPEG00000022949	smg5	98	65.667	Amphiprion_percula
ENSAPLG00000010263	SMG5	100	65.481	ENSATEG00000005348	smg5	98	66.379	Anabas_testudineus
ENSAPLG00000010263	SMG5	100	78.634	ENSANAG00000032899	SMG5	99	78.906	Aotus_nancymaae
ENSAPLG00000010263	SMG5	100	64.860	ENSACLG00000009311	smg5	98	65.994	Astatotilapia_calliptera
ENSAPLG00000010263	SMG5	99	42.843	ENSBTAG00000021747	-	97	42.360	Bos_taurus
ENSAPLG00000010263	SMG5	100	78.634	ENSBTAG00000009435	SMG5	98	78.634	Bos_taurus
ENSAPLG00000010263	SMG5	100	78.829	ENSCJAG00000005684	SMG5	98	79.122	Callithrix_jacchus
ENSAPLG00000010263	SMG5	100	77.756	ENSCAFG00000016839	SMG5	98	77.756	Canis_familiaris
ENSAPLG00000010263	SMG5	100	77.756	ENSCAFG00020006061	SMG5	98	77.756	Canis_lupus_dingo
ENSAPLG00000010263	SMG5	99	42.940	ENSCHIG00000006323	-	98	42.650	Capra_hircus
ENSAPLG00000010263	SMG5	100	78.244	ENSCHIG00000007709	SMG5	98	78.537	Capra_hircus
ENSAPLG00000010263	SMG5	100	78.537	ENSTSYG00000004099	SMG5	98	78.829	Carlito_syrichta
ENSAPLG00000010263	SMG5	97	59.218	ENSCAPG00000003631	SMG5	100	59.478	Cavia_aperea
ENSAPLG00000010263	SMG5	100	77.702	ENSCPOG00000015696	SMG5	98	78.696	Cavia_porcellus
ENSAPLG00000010263	SMG5	100	78.537	ENSCCAG00000027409	SMG5	99	78.809	Cebus_capucinus
ENSAPLG00000010263	SMG5	100	78.634	ENSCATG00000030539	SMG5	98	78.927	Cercocebus_atys
ENSAPLG00000010263	SMG5	100	78.384	ENSCLAG00000003983	SMG5	98	78.773	Chinchilla_lanigera
ENSAPLG00000010263	SMG5	100	78.634	ENSCSAG00000002120	SMG5	98	78.927	Chlorocebus_sabaeus
ENSAPLG00000010263	SMG5	54	85.199	ENSCHOG00000008741	-	57	85.199	Choloepus_hoffmanni
ENSAPLG00000010263	SMG5	96	91.066	ENSCPBG00000025848	SMG5	100	91.066	Chrysemys_picta_bellii
ENSAPLG00000010263	SMG5	100	74.927	ENSCANG00000029208	SMG5	98	75.220	Colobus_angolensis_palliatus
ENSAPLG00000010263	SMG5	100	77.410	ENSCGRG00001006336	Smg5	98	77.994	Cricetulus_griseus_chok1gshd
ENSAPLG00000010263	SMG5	100	77.410	ENSCGRG00000005111	Smg5	100	77.973	Cricetulus_griseus_crigri
ENSAPLG00000010263	SMG5	100	64.831	ENSCSEG00000014220	smg5	98	65.411	Cynoglossus_semilaevis
ENSAPLG00000010263	SMG5	100	59.538	ENSCVAG00000000529	smg5	97	60.096	Cyprinodon_variegatus
ENSAPLG00000010263	SMG5	100	62.364	ENSDARG00000041481	smg5	98	63.967	Danio_rerio
ENSAPLG00000010263	SMG5	95	35.461	ENSDNOG00000039862	-	100	35.258	Dasypus_novemcinctus
ENSAPLG00000010263	SMG5	100	74.634	ENSDNOG00000000051	SMG5	98	75.122	Dasypus_novemcinctus
ENSAPLG00000010263	SMG5	100	77.897	ENSDORG00000010382	Smg5	98	78.092	Dipodomys_ordii
ENSAPLG00000010263	SMG5	82	88.350	ENSETEG00000010336	SMG5	88	88.350	Echinops_telfairi
ENSAPLG00000010263	SMG5	100	78.732	ENSEASG00005019122	SMG5	98	78.927	Equus_asinus_asinus
ENSAPLG00000010263	SMG5	100	78.634	ENSECAG00000001389	SMG5	98	78.829	Equus_caballus
ENSAPLG00000010263	SMG5	71	95.101	ENSEEUG00000012690	SMG5	75	95.101	Erinaceus_europaeus
ENSAPLG00000010263	SMG5	100	66.537	ENSELUG00000012585	smg5	98	66.828	Esox_lucius
ENSAPLG00000010263	SMG5	100	77.561	ENSFCAG00000011783	SMG5	98	77.561	Felis_catus
ENSAPLG00000010263	SMG5	57	95.392	ENSFALG00000001166	-	100	95.392	Ficedula_albicollis
ENSAPLG00000010263	SMG5	99	77.290	ENSFDAG00000017388	SMG5	100	77.388	Fukomys_damarensis
ENSAPLG00000010263	SMG5	97	61.294	ENSFHEG00000013939	smg5	98	61.493	Fundulus_heteroclitus
ENSAPLG00000010263	SMG5	100	61.973	ENSGMOG00000007310	smg5	98	63.139	Gadus_morhua
ENSAPLG00000010263	SMG5	100	90.625	ENSGALG00000029918	-	98	90.625	Gallus_gallus
ENSAPLG00000010263	SMG5	100	56.636	ENSGAFG00000021691	smg5	98	57.919	Gambusia_affinis
ENSAPLG00000010263	SMG5	100	62.004	ENSGACG00000013142	smg5	98	63.110	Gasterosteus_aculeatus
ENSAPLG00000010263	SMG5	100	91.042	ENSGAGG00000016131	SMG5	98	91.042	Gopherus_agassizii
ENSAPLG00000010263	SMG5	100	78.537	ENSGGOG00000010932	SMG5	98	78.829	Gorilla_gorilla
ENSAPLG00000010263	SMG5	100	65.255	ENSHBUG00000008654	smg5	98	65.714	Haplochromis_burtoni
ENSAPLG00000010263	SMG5	100	76.728	ENSHGLG00000019152	SMG5	98	76.923	Heterocephalus_glaber_female
ENSAPLG00000010263	SMG5	90	77.047	ENSHGLG00100015948	SMG5	97	77.263	Heterocephalus_glaber_male
ENSAPLG00000010263	SMG5	85	74.627	ENSHCOG00000010229	smg5	92	74.378	Hippocampus_comes
ENSAPLG00000010263	SMG5	100	62.915	ENSIPUG00000006624	Smg5	98	64.088	Ictalurus_punctatus
ENSAPLG00000010263	SMG5	100	78.341	ENSSTOG00000001780	SMG5	98	78.537	Ictidomys_tridecemlineatus
ENSAPLG00000010263	SMG5	100	77.485	ENSJJAG00000022763	Smg5	98	77.485	Jaculus_jaculus
ENSAPLG00000010263	SMG5	100	64.464	ENSLBEG00000002145	smg5	98	64.176	Labrus_bergylta
ENSAPLG00000010263	SMG5	99	68.952	ENSLACG00000010521	SMG5	97	68.952	Latimeria_chalumnae
ENSAPLG00000010263	SMG5	100	59.361	ENSLOCG00000008380	smg5	97	62.159	Lepisosteus_oculatus
ENSAPLG00000010263	SMG5	99	78.125	ENSLAFG00000006241	SMG5	98	78.516	Loxodonta_africana
ENSAPLG00000010263	SMG5	100	78.634	ENSMFAG00000045357	SMG5	98	78.927	Macaca_fascicularis
ENSAPLG00000010263	SMG5	100	78.634	ENSMMUG00000000090	SMG5	98	78.927	Macaca_mulatta
ENSAPLG00000010263	SMG5	100	78.537	ENSMNEG00000044425	SMG5	98	78.829	Macaca_nemestrina
ENSAPLG00000010263	SMG5	100	72.692	ENSMLEG00000041192	SMG5	98	72.983	Mandrillus_leucophaeus
ENSAPLG00000010263	SMG5	100	62.657	ENSMAMG00000010683	smg5	100	63.492	Mastacembelus_armatus
ENSAPLG00000010263	SMG5	65	58.112	ENSMZEG00005016543	smg5	100	58.504	Maylandia_zebra
ENSAPLG00000010263	SMG5	100	62.824	ENSMZEG00005015815	smg5	98	63.410	Maylandia_zebra
ENSAPLG00000010263	SMG5	100	76.631	ENSMAUG00000010381	Smg5	98	77.313	Mesocricetus_auratus
ENSAPLG00000010263	SMG5	100	79.024	ENSMICG00000002257	SMG5	98	79.317	Microcebus_murinus
ENSAPLG00000010263	SMG5	100	76.871	ENSMOCG00000016590	Smg5	98	76.585	Microtus_ochrogaster
ENSAPLG00000010263	SMG5	100	60.325	ENSMMOG00000017199	smg5	98	61.197	Mola_mola
ENSAPLG00000010263	SMG5	81	38.386	ENSMODG00000004735	-	94	38.386	Monodelphis_domestica
ENSAPLG00000010263	SMG5	83	37.530	ENSMODG00000010675	-	93	37.530	Monodelphis_domestica
ENSAPLG00000010263	SMG5	87	80.915	ENSMODG00000016901	SMG5	95	81.348	Monodelphis_domestica
ENSAPLG00000010263	SMG5	99	33.906	ENSMODG00000004511	-	99	34.069	Monodelphis_domestica
ENSAPLG00000010263	SMG5	89	35.992	ENSMODG00000004532	-	96	36.098	Monodelphis_domestica
ENSAPLG00000010263	SMG5	100	61.986	ENSMALG00000010375	smg5	98	62.791	Monopterus_albus
ENSAPLG00000010263	SMG5	100	77.507	MGP_CAROLIEiJ_G0025163	Smg5	100	96.648	Mus_caroli
ENSAPLG00000010263	SMG5	100	77.605	ENSMUSG00000001415	Smg5	99	96.648	Mus_musculus
ENSAPLG00000010263	SMG5	100	77.313	MGP_PahariEiJ_G0026606	Smg5	100	96.648	Mus_pahari
ENSAPLG00000010263	SMG5	100	77.605	MGP_SPRETEiJ_G0026104	Smg5	100	96.648	Mus_spretus
ENSAPLG00000010263	SMG5	96	75.788	ENSMPUG00000004546	SMG5	100	75.687	Mustela_putorius_furo
ENSAPLG00000010263	SMG5	100	77.410	ENSMLUG00000008518	SMG5	98	78.307	Myotis_lucifugus
ENSAPLG00000010263	SMG5	100	78.168	ENSNGAG00000020706	Smg5	98	78.558	Nannospalax_galili
ENSAPLG00000010263	SMG5	86	56.328	ENSNGAG00000012101	-	97	43.220	Nannospalax_galili
ENSAPLG00000010263	SMG5	97	62.052	ENSNBRG00000004332	smg5	96	62.351	Neolamprologus_brichardi
ENSAPLG00000010263	SMG5	100	78.634	ENSNLEG00000012439	SMG5	98	78.927	Nomascus_leucogenys
ENSAPLG00000010263	SMG5	100	79.240	ENSMEUG00000012834	SMG5	98	79.630	Notamacropus_eugenii
ENSAPLG00000010263	SMG5	100	77.268	ENSOPRG00000009152	SMG5	98	77.366	Ochotona_princeps
ENSAPLG00000010263	SMG5	100	78.516	ENSODEG00000012237	SMG5	98	78.711	Octodon_degus
ENSAPLG00000010263	SMG5	100	61.580	ENSONIG00000008632	smg5	98	63.515	Oreochromis_niloticus
ENSAPLG00000010263	SMG5	91	39.032	ENSOCUG00000023338	-	97	38.925	Oryctolagus_cuniculus
ENSAPLG00000010263	SMG5	100	77.951	ENSOCUG00000012886	SMG5	100	78.341	Oryctolagus_cuniculus
ENSAPLG00000010263	SMG5	100	61.434	ENSORLG00000016239	smg5	98	64.583	Oryzias_latipes
ENSAPLG00000010263	SMG5	100	64.085	ENSORLG00020013127	smg5	98	65.924	Oryzias_latipes_hni
ENSAPLG00000010263	SMG5	100	64.479	ENSORLG00015019014	smg5	98	66.023	Oryzias_latipes_hsok
ENSAPLG00000010263	SMG5	82	60.823	ENSOMEG00000021330	smg5	90	61.889	Oryzias_melastigma
ENSAPLG00000010263	SMG5	100	77.561	ENSOGAG00000004966	SMG5	98	77.951	Otolemur_garnettii
ENSAPLG00000010263	SMG5	100	78.146	ENSOARG00000005778	SMG5	98	78.439	Ovis_aries
ENSAPLG00000010263	SMG5	99	42.788	ENSOARG00000011963	-	97	42.981	Ovis_aries
ENSAPLG00000010263	SMG5	100	78.537	ENSPPAG00000011996	SMG5	98	78.829	Pan_paniscus
ENSAPLG00000010263	SMG5	100	77.366	ENSPPRG00000011901	SMG5	100	77.366	Panthera_pardus
ENSAPLG00000010263	SMG5	99	72.566	ENSPTIG00000007892	SMG5	98	72.566	Panthera_tigris_altaica
ENSAPLG00000010263	SMG5	92	94.828	ENSPTRG00000049282	-	98	78.829	Pan_troglodytes
ENSAPLG00000010263	SMG5	100	78.537	ENSPTRG00000023925	SMG5	98	78.829	Pan_troglodytes
ENSAPLG00000010263	SMG5	100	78.634	ENSPANG00000011201	SMG5	98	78.927	Papio_anubis
ENSAPLG00000010263	SMG5	100	65.377	ENSPKIG00000009402	smg5	98	65.604	Paramormyrops_kingsleyae
ENSAPLG00000010263	SMG5	100	91.237	ENSPSIG00000015198	SMG5	100	89.417	Pelodiscus_sinensis
ENSAPLG00000010263	SMG5	100	61.009	ENSPMGG00000010465	smg5	98	61.496	Periophthalmus_magnuspinnatus
ENSAPLG00000010263	SMG5	100	77.561	ENSPEMG00000001819	Smg5	98	77.832	Peromyscus_maniculatus_bairdii
ENSAPLG00000010263	SMG5	100	48.855	ENSPMAG00000000410	smg5	98	50.190	Petromyzon_marinus
ENSAPLG00000010263	SMG5	100	80.214	ENSPCIG00000018938	SMG5	98	80.526	Phascolarctos_cinereus
ENSAPLG00000010263	SMG5	100	60.772	ENSPFOG00000010191	smg5	98	62.646	Poecilia_formosa
ENSAPLG00000010263	SMG5	100	61.101	ENSPLAG00000009332	smg5	98	62.432	Poecilia_latipinna
ENSAPLG00000010263	SMG5	100	64.672	ENSPMEG00000014105	smg5	98	65.318	Poecilia_mexicana
ENSAPLG00000010263	SMG5	100	61.086	ENSPREG00000017713	smg5	98	62.816	Poecilia_reticulata
ENSAPLG00000010263	SMG5	100	78.829	ENSPPYG00000000723	SMG5	98	79.122	Pongo_abelii
ENSAPLG00000010263	SMG5	72	97.207	ENSPCAG00000008412	SMG5	75	97.207	Procavia_capensis
ENSAPLG00000010263	SMG5	100	79.317	ENSPCOG00000004741	SMG5	98	79.610	Propithecus_coquereli
ENSAPLG00000010263	SMG5	100	70.049	ENSPVAG00000016748	SMG5	98	70.049	Pteropus_vampyrus
ENSAPLG00000010263	SMG5	100	61.752	ENSPNYG00000013397	smg5	98	63.172	Pundamilia_nyererei
ENSAPLG00000010263	SMG5	100	62.374	ENSPNAG00000028363	smg5	98	63.937	Pygocentrus_nattereri
ENSAPLG00000010263	SMG5	100	77.215	ENSRNOG00000019590	Smg5	98	77.507	Rattus_norvegicus
ENSAPLG00000010263	SMG5	100	78.341	ENSRBIG00000027428	SMG5	98	78.634	Rhinopithecus_bieti
ENSAPLG00000010263	SMG5	100	78.439	ENSRROG00000030035	SMG5	98	78.732	Rhinopithecus_roxellana
ENSAPLG00000010263	SMG5	100	78.732	ENSSBOG00000033339	SMG5	98	79.024	Saimiri_boliviensis_boliviensis
ENSAPLG00000010263	SMG5	100	79.748	ENSSHAG00000014163	SMG5	100	79.748	Sarcophilus_harrisii
ENSAPLG00000010263	SMG5	56	37.931	ENSSHAG00000000935	-	84	37.931	Sarcophilus_harrisii
ENSAPLG00000010263	SMG5	77	38.000	ENSSHAG00000000561	-	98	37.531	Sarcophilus_harrisii
ENSAPLG00000010263	SMG5	74	45.989	ENSSHAG00000009572	-	96	33.496	Sarcophilus_harrisii
ENSAPLG00000010263	SMG5	100	66.602	ENSSFOG00015024175	smg5	98	66.731	Scleropages_formosus
ENSAPLG00000010263	SMG5	100	62.050	ENSSMAG00000013059	smg5	98	63.450	Scophthalmus_maximus
ENSAPLG00000010263	SMG5	100	61.964	ENSSDUG00000007122	smg5	98	63.482	Seriola_dumerili
ENSAPLG00000010263	SMG5	100	62.186	ENSSLDG00000011418	smg5	98	63.710	Seriola_lalandi_dorsalis
ENSAPLG00000010263	SMG5	90	67.171	ENSSARG00000012484	SMG5	97	67.495	Sorex_araneus
ENSAPLG00000010263	SMG5	96	87.955	ENSSPUG00000002260	SMG5	100	88.360	Sphenodon_punctatus
ENSAPLG00000010263	SMG5	100	65.143	ENSSPAG00000014266	smg5	97	64.880	Stegastes_partitus
ENSAPLG00000010263	SMG5	100	78.732	ENSSSCG00000006490	-	100	78.230	Sus_scrofa
ENSAPLG00000010263	SMG5	97	61.623	ENSSSCG00000039308	-	96	62.525	Sus_scrofa
ENSAPLG00000010263	SMG5	100	92.982	ENSTGUG00000003748	-	98	92.982	Taeniopygia_guttata
ENSAPLG00000010263	SMG5	100	64.189	ENSTRUG00000012580	smg5	98	64.841	Takifugu_rubripes
ENSAPLG00000010263	SMG5	100	65.251	ENSTNIG00000010303	smg5	98	65.251	Tetraodon_nigroviridis
ENSAPLG00000010263	SMG5	57	97.537	ENSTBEG00000002777	SMG5	59	97.537	Tupaia_belangeri
ENSAPLG00000010263	SMG5	97	76.690	ENSTTRG00000001401	SMG5	94	76.892	Tursiops_truncatus
ENSAPLG00000010263	SMG5	100	77.268	ENSUAMG00000013721	SMG5	98	77.268	Ursus_americanus
ENSAPLG00000010263	SMG5	100	73.638	ENSUMAG00000018041	SMG5	98	72.949	Ursus_maritimus
ENSAPLG00000010263	SMG5	99	69.727	ENSVPAG00000009446	SMG5	99	69.922	Vicugna_pacos
ENSAPLG00000010263	SMG5	100	77.854	ENSVVUG00000005887	SMG5	98	77.854	Vulpes_vulpes
ENSAPLG00000010263	SMG5	79	69.400	ENSXETG00000033791	SMG5	99	69.400	Xenopus_tropicalis
ENSAPLG00000010263	SMG5	77	68.649	ENSXCOG00000004379	smg5	93	69.231	Xiphophorus_couchianus
ENSAPLG00000010263	SMG5	100	63.619	ENSXMAG00000013499	smg5	98	64.265	Xiphophorus_maculatus